Wall clock time and date at job start Tue Mar 31 2020 23:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86805 * 120.00442 * 2 1 4 4 H 1.48491 * 109.47138 * 270.00316 * 3 2 1 5 5 H 1.48502 * 109.46614 * 30.00427 * 3 2 1 6 6 H 1.48498 * 109.47195 * 149.99915 * 3 2 1 7 7 C 1.38659 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99677 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99978 * 359.97438 * 7 2 1 10 10 C 1.35755 * 116.99946 * 174.98675 * 9 7 2 11 11 C 1.38875 * 120.06904 * 5.15799 * 10 9 7 12 12 C 1.38099 * 119.93195 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06711 * 0.02700 * 12 11 10 14 14 C 1.50698 * 119.93023 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46950 * 89.99848 * 14 13 12 16 16 O 1.21280 * 120.00069 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99926 * 179.97438 * 15 14 13 18 18 C 1.39430 * 119.99797 * 185.55433 * 17 15 14 19 19 C 1.36497 * 120.69127 * 24.85225 * 18 17 15 20 20 C 1.39701 * 121.76303 * 180.02562 * 19 18 17 21 21 C 1.35562 * 122.70826 * 359.72083 * 20 19 18 22 22 C 1.40692 * 120.08068 * 0.02630 * 21 20 19 23 23 N 1.31057 * 138.75396 * 179.97438 * 22 21 20 24 24 O 1.21493 * 109.06960 * 180.02562 * 23 22 21 25 25 N 1.21513 * 116.27272 * 0.02562 * 24 23 22 26 26 C 1.30657 * 109.09329 * 359.97438 * 25 24 23 27 27 C 1.38298 * 120.14090 * 0.24909 * 13 12 11 28 28 C 1.38107 * 120.06552 * 359.45040 * 27 13 12 29 29 H 0.97010 * 120.00010 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.03377 * 0.02562 * 11 10 9 31 31 H 1.08002 * 119.96903 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.47255 * 330.00078 * 14 13 12 33 33 H 1.08998 * 109.47315 * 210.00220 * 14 13 12 34 34 H 0.97002 * 119.99778 * 5.55300 * 17 15 14 35 35 H 1.08006 * 119.11480 * 359.80386 * 19 18 17 36 36 H 1.08004 * 118.64685 * 179.74829 * 20 19 18 37 37 H 1.08000 * 119.95681 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.96749 * 179.70557 * 27 13 12 39 39 H 1.08001 * 120.03346 * 180.27106 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5472 1.4401 0.7000 7 6 2.0087 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0698 -3.5047 -0.1068 11 6 3.4570 -3.4388 -0.1013 12 6 4.2022 -4.5964 -0.2101 13 6 3.5684 -5.8203 -0.3249 14 6 4.3846 -7.0815 -0.4440 15 6 4.6575 -7.6349 0.9309 16 8 4.2307 -7.0620 1.9109 17 7 5.3749 -8.7673 1.0714 18 6 5.5296 -9.3427 2.3320 19 6 4.6123 -9.1182 3.3176 20 6 4.7454 -9.6828 4.5885 21 6 5.7811 -10.4893 4.9269 22 6 6.7797 -10.7888 3.9822 23 7 7.8869 -11.4857 3.9060 24 8 8.3523 -11.3707 2.7896 25 7 7.7288 -10.6707 2.0165 26 6 6.6691 -10.2041 2.6218 27 6 2.1872 -5.8886 -0.3364 28 6 1.4364 -4.7352 -0.2217 29 1 -0.4850 0.8401 0.0004 30 1 3.9525 -2.4833 -0.0121 31 1 5.2811 -4.5459 -0.2063 32 1 5.3293 -6.8575 -0.9395 33 1 3.8331 -7.8174 -1.0291 34 1 5.7835 -9.1819 0.2955 35 1 3.7627 -8.4843 3.1103 36 1 3.9918 -9.4683 5.3318 37 1 5.8397 -10.9024 5.9231 38 1 1.6952 -6.8454 -0.4310 39 1 0.3577 -4.7896 -0.2264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773397559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:07 Heat of formation + Delta-G solvation = 90.168185 kcal Electronic energy + Delta-G solvation = -27011.272824 eV Core-core repulsion = 22889.748849 eV Total energy + Delta-G solvation = -4121.523975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -47.72553 -41.73867 -40.68327 -39.29223 -38.19230 -36.40379 -35.40195 -34.42531 -34.22788 -33.03356 -31.77034 -30.86192 -28.25422 -27.15376 -26.51219 -25.92847 -23.63105 -23.37413 -21.91661 -21.66951 -20.10808 -20.01506 -19.84452 -19.38592 -18.83075 -18.10506 -17.70570 -16.83176 -16.55939 -16.36524 -16.06761 -15.91043 -15.56166 -15.36334 -15.13372 -14.95037 -14.40718 -14.22622 -14.12219 -13.99860 -13.61565 -13.55168 -13.09181 -12.97695 -12.97074 -12.79101 -12.70766 -12.46509 -12.30663 -12.27063 -12.12003 -11.63671 -11.17406 -11.05449 -10.80971 -10.72343 -9.75084 -9.00431 -8.90991 -8.47326 -6.15212 -1.04750 0.05982 0.63083 0.63758 0.70024 1.34344 1.43015 1.49883 1.51730 1.69138 1.90732 2.17511 2.33482 2.35647 2.73465 2.85202 3.16769 3.43056 3.52949 3.65163 3.81626 3.98785 4.03047 4.05756 4.19836 4.27245 4.41293 4.46288 4.60615 4.65216 4.71990 4.81498 4.99408 5.08966 5.15079 5.15228 5.28018 5.31238 5.57031 5.58567 5.73033 5.77026 6.03378 6.17036 6.28043 6.96647 6.97496 7.32390 7.78850 8.75924 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022920 B = 0.001986 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.324779 B =14094.944160 C =14193.591142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.246 4.246 12 C -0.058 4.058 13 C -0.149 4.149 14 C -0.073 4.073 15 C 0.516 3.484 16 O -0.536 6.536 17 N -0.655 5.655 18 C 0.194 3.806 19 C -0.131 4.131 20 C -0.040 4.040 21 C -0.107 4.107 22 C 0.037 3.963 23 N -0.360 5.360 24 O 0.368 5.632 25 N -0.343 5.343 26 C -0.009 4.009 27 C -0.052 4.052 28 C -0.206 4.206 29 H 0.273 0.727 30 H 0.115 0.885 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.430 0.570 35 H 0.157 0.843 36 H 0.175 0.825 37 H 0.171 0.829 38 H 0.152 0.848 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.802 -23.716 3.542 27.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.489 4.489 8 H 0.117 0.883 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.265 4.265 12 C -0.076 4.076 13 C -0.150 4.150 14 C -0.112 4.112 15 C 0.306 3.694 16 O -0.411 6.411 17 N -0.299 5.299 18 C 0.095 3.905 19 C -0.156 4.156 20 C -0.063 4.063 21 C -0.129 4.129 22 C -0.117 4.117 23 N -0.085 5.085 24 O 0.134 5.866 25 N -0.064 5.064 26 C -0.164 4.164 27 C -0.070 4.070 28 C -0.225 4.225 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.159 0.841 34 H 0.269 0.731 35 H 0.174 0.826 36 H 0.193 0.807 37 H 0.188 0.812 38 H 0.169 0.831 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.082 -23.621 3.820 27.764 hybrid contribution -0.446 1.336 -0.046 1.409 sum 13.636 -22.285 3.774 26.397 Atomic orbital electron populations 1.70182 1.07976 1.28768 1.48911 1.26587 0.96880 1.02720 0.95930 0.84592 0.77740 0.74607 0.79301 1.18640 1.19554 1.17876 1.21798 0.92443 0.81507 1.53169 0.88281 1.83937 1.35970 1.12620 1.81447 1.19983 0.91629 0.88034 0.94033 1.21215 0.93162 1.00046 1.12082 1.20930 0.99646 0.91254 0.95793 1.19150 0.93335 0.93923 1.08592 1.20542 1.03219 0.95349 0.92128 1.21534 0.76370 0.78390 0.93102 1.90735 1.49962 1.58765 1.41603 1.43451 1.52771 1.25698 1.08030 1.17307 0.90159 0.94576 0.88492 1.21401 0.99158 1.01808 0.93246 1.21102 0.97252 0.92032 0.95897 1.20132 0.91772 1.01610 0.99344 1.23137 0.95307 0.97237 0.95972 1.75243 1.10987 1.20815 1.01437 1.85371 1.41533 1.46653 1.13024 1.75019 1.06095 1.07950 1.17352 1.23856 0.95979 1.03598 0.93006 1.20895 0.93312 0.96912 0.95869 1.20458 0.99967 0.90669 1.11441 0.91841 0.86735 0.84547 0.84931 0.84062 0.73101 0.82580 0.80719 0.81191 0.83070 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.90 13.67 21.61 0.30 -56.61 16 2 C -0.02 -1.37 5.49 84.84 0.47 -0.90 16 3 Si 1.02 43.27 29.55 68.60 2.03 45.30 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 7 C -0.41 -24.38 9.49 67.92 0.64 -23.74 16 8 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 9 O -0.23 -14.22 9.76 -22.74 -0.22 -14.44 16 10 C 0.11 5.70 6.65 22.58 0.15 5.85 16 11 C -0.25 -10.80 9.17 22.39 0.21 -10.60 16 12 C -0.06 -1.95 9.69 22.25 0.22 -1.74 16 13 C -0.15 -4.19 4.38 -19.84 -0.09 -4.28 16 14 C -0.07 -1.16 5.83 29.10 0.17 -0.99 16 15 C 0.52 10.23 7.62 87.66 0.67 10.89 16 16 O -0.54 -15.58 13.23 -3.03 -0.04 -15.62 16 17 N -0.65 -10.01 5.38 -300.04 -1.61 -11.62 16 18 C 0.19 3.60 6.60 39.47 0.26 3.87 16 19 C -0.13 -2.37 8.67 22.22 0.19 -2.18 16 20 C -0.04 -0.52 9.84 22.00 0.22 -0.30 16 21 C -0.11 -1.43 10.03 22.25 0.22 -1.21 16 22 C 0.04 0.67 7.77 42.59 0.33 1.01 16 23 N -0.36 -7.04 12.29 -57.38 -0.71 -7.74 16 24 O 0.37 6.94 11.67 139.26 1.63 8.56 16 25 N -0.34 -6.60 12.27 -55.26 -0.68 -7.28 16 26 C -0.01 -0.17 7.91 44.00 0.35 0.18 16 27 C -0.05 -1.63 9.69 22.25 0.22 -1.42 16 28 C -0.21 -8.70 9.99 22.39 0.22 -8.47 16 29 H 0.27 15.41 8.31 -92.70 -0.77 14.63 16 30 H 0.11 5.18 5.64 -2.91 -0.02 5.17 16 31 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 32 H 0.13 1.36 8.08 -2.39 -0.02 1.34 16 33 H 0.14 1.25 8.08 -2.39 -0.02 1.23 16 34 H 0.43 3.98 8.81 -92.71 -0.82 3.16 16 35 H 0.16 3.32 5.71 -2.91 -0.02 3.30 16 36 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 37 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -80.02 348.08 5.46 -74.56 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.33 Total: 18.91 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 4.44 Total: -34.02 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -2.70 Total: -83.25 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 1.36 Total: -21.50 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -80.02 5.46 -74.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773397559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.724 kcal (2) G-P(sol) polarization free energy of solvation -80.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds