Wall clock time and date at job start Tue Mar 31 2020 22:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45198 * 109.47014 * 2 1 4 4 C 1.34230 * 116.99633 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00446 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99612 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.47589 * 60.00311 * 6 4 3 8 8 C 1.53004 * 109.47288 * 300.00087 * 6 4 3 9 9 O 1.42903 * 109.46925 * 305.00465 * 8 6 4 10 10 N 1.46505 * 109.47220 * 180.02562 * 6 4 3 11 11 C 1.34774 * 120.00150 * 204.99919 * 10 6 4 12 12 O 1.21611 * 119.99964 * 359.97438 * 11 10 6 13 13 C 1.47433 * 119.99869 * 179.97438 * 11 10 6 14 14 C 1.39681 * 120.21363 * 0.02930 * 13 11 10 15 15 C 1.37805 * 119.93452 * 179.97438 * 14 13 11 16 16 C 1.38654 * 120.38625 * 0.02562 * 15 14 13 17 17 C 1.37919 * 120.43362 * 0.02562 * 16 15 14 18 18 C 1.39103 * 120.05168 * 359.97438 * 17 16 15 19 19 S 1.76206 * 120.18762 * 180.02562 * 18 17 16 20 20 C 1.76190 * 99.99940 * 6.84043 * 19 18 17 21 21 H 1.07998 * 120.00270 * 5.65109 * 20 19 18 22 22 C 1.38809 * 120.00047 * 185.65490 * 20 19 18 23 23 N 1.31555 * 120.00018 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00216 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47032 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47010 * 119.99800 * 24 22 20 27 27 H 1.48504 * 109.47072 * 239.99841 * 24 22 20 28 28 H 1.08995 * 109.46721 * 299.99635 * 1 2 3 29 29 H 1.08998 * 109.47308 * 59.99188 * 1 2 3 30 30 H 1.08995 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46522 * 240.00786 * 2 1 3 32 32 H 1.08998 * 109.47308 * 120.00812 * 2 1 3 33 33 H 1.08994 * 109.46995 * 65.00134 * 8 6 4 34 34 H 1.08997 * 109.47082 * 185.00102 * 8 6 4 35 35 H 0.96703 * 113.99773 * 180.02562 * 9 8 6 36 36 H 0.97000 * 119.99614 * 25.00132 * 10 6 4 37 37 H 1.07997 * 120.03131 * 359.97438 * 14 13 11 38 38 H 1.08008 * 119.80557 * 180.02562 * 15 14 13 39 39 H 1.08001 * 119.78248 * 180.28485 * 16 15 14 40 40 H 1.07998 * 119.97190 * 179.97438 * 17 16 15 41 41 H 0.96996 * 120.00225 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5845 3.4693 0.8911 8 6 3.4496 3.6847 -1.2480 9 8 3.7889 2.9282 -2.4120 10 7 5.3838 2.8608 0.0010 11 6 6.1121 3.8816 0.4947 12 8 5.5548 4.8667 0.9399 13 6 7.5844 3.8042 0.4951 14 6 8.2290 2.6752 -0.0156 15 6 9.6055 2.6092 -0.0129 16 6 10.3570 3.6579 0.4950 17 6 9.7366 4.7796 1.0041 18 6 8.3482 4.8654 1.0103 19 16 7.5519 6.2970 1.6592 20 6 8.9546 7.3243 1.9448 21 1 9.9345 7.0012 1.6258 22 6 8.8002 8.5488 2.5800 23 7 7.6065 8.9426 2.9683 24 14 10.2874 9.6377 2.8835 25 1 11.5049 8.9709 2.3560 26 1 10.0970 10.9391 2.1940 27 1 10.4426 9.8684 4.3423 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.3689 3.8197 -1.2047 34 1 3.9359 4.6592 -1.2935 35 1 3.5199 3.3432 -3.2430 36 1 5.8282 2.0752 -0.3544 37 1 7.6493 1.8549 -0.4123 38 1 10.1018 1.7354 -0.4088 39 1 11.4353 3.5978 0.4880 40 1 10.3292 5.5919 1.3982 41 1 7.4987 9.7981 3.4125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782763104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:35 Heat of formation + Delta-G solvation = -139.347866 kcal Electronic energy + Delta-G solvation = -26677.525494 eV Core-core repulsion = 22649.200157 eV Total energy + Delta-G solvation = -4028.325337 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.89381 -39.49032 -37.74807 -36.92571 -36.71666 -34.24977 -32.76394 -32.12303 -31.08191 -30.27307 -29.09753 -25.83407 -24.88870 -23.74009 -22.73073 -21.94314 -20.95126 -20.09101 -18.68264 -17.79382 -17.46207 -17.36757 -16.72853 -16.51066 -15.83528 -15.44157 -15.14136 -14.87511 -14.66677 -14.28599 -14.03197 -13.87506 -13.71740 -13.56008 -13.11096 -13.02329 -12.93191 -12.69030 -12.21020 -12.10383 -11.88280 -11.75846 -11.58931 -11.22443 -11.21348 -10.92332 -10.78608 -10.68225 -10.32870 -10.17961 -9.84182 -9.70235 -9.52361 -8.99288 -8.73415 -8.33877 -8.10699 -6.54549 -6.47610 -4.17808 1.50473 2.02941 2.03725 2.25573 3.09858 3.11478 3.19841 3.36538 3.42892 3.45608 4.02760 4.05340 4.36642 4.47563 4.63785 4.69125 4.89218 4.94002 4.97682 5.11423 5.17096 5.21099 5.32209 5.39846 5.46869 5.51510 5.56043 5.62462 5.66238 5.95482 6.13109 6.19080 6.38884 6.52196 6.61036 6.86266 7.02875 7.13881 7.41993 7.44482 7.53452 7.59484 7.81230 8.15804 8.65452 8.99160 10.55814 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016504 B = 0.002913 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.144802 B = 9608.929256 C =10679.755279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.354 6.354 4 C 0.473 3.527 5 O -0.500 6.500 6 C 0.163 3.837 7 H 0.140 0.860 8 C 0.068 3.932 9 O -0.571 6.571 10 N -0.718 5.718 11 C 0.560 3.440 12 O -0.510 6.510 13 C -0.177 4.177 14 C -0.057 4.057 15 C -0.185 4.185 16 C -0.075 4.075 17 C -0.154 4.154 18 C -0.054 4.054 19 S 0.182 5.818 20 C -0.594 4.594 21 H 0.092 0.908 22 C 0.083 3.917 23 N -0.858 5.858 24 Si 0.919 3.081 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.277 1.277 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.383 0.617 36 H 0.408 0.592 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.140 0.860 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 -14.448 -8.153 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.270 6.270 4 C 0.315 3.685 5 O -0.387 6.387 6 C 0.056 3.944 7 H 0.157 0.843 8 C -0.011 4.011 9 O -0.377 6.377 10 N -0.376 5.376 11 C 0.350 3.650 12 O -0.387 6.387 13 C -0.192 4.192 14 C -0.077 4.077 15 C -0.210 4.210 16 C -0.097 4.097 17 C -0.179 4.179 18 C -0.174 4.174 19 S 0.447 5.553 20 C -0.741 4.741 21 H 0.109 0.891 22 C -0.128 4.128 23 N -0.491 5.491 24 Si 0.745 3.255 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.230 0.770 36 H 0.246 0.754 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.157 0.843 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.491 -13.691 -6.900 19.160 hybrid contribution 2.286 0.111 -0.605 2.367 sum -9.205 -13.580 -7.505 18.041 Atomic orbital electron populations 1.21807 0.92503 1.02975 1.03642 1.23047 0.95374 0.79996 1.02719 1.86468 1.23926 1.32617 1.83999 1.23447 0.80925 0.92203 0.71926 1.90645 1.60345 1.42687 1.45027 1.20380 0.83174 0.90032 1.00819 0.84298 1.22581 0.99437 0.94811 0.84262 1.86463 1.84574 1.50214 1.16405 1.45606 1.03557 1.22600 1.65808 1.18329 0.87369 0.82083 0.77231 1.90788 1.71938 1.30326 1.45665 1.18955 0.90830 0.97507 1.11907 1.20962 0.94815 0.95532 0.96422 1.20655 0.93556 0.99770 1.07016 1.21106 0.98991 0.93398 0.96176 1.21432 0.93751 0.99353 1.03371 1.23063 0.96770 0.99987 0.97584 1.84675 1.07519 0.99835 1.63294 1.24086 0.98075 1.06603 1.45308 0.89067 1.25098 0.97113 0.97066 0.93494 1.69979 1.21979 1.21327 1.35797 0.86098 0.81400 0.79688 0.78345 1.19147 1.20238 1.20241 0.91349 0.91416 0.90222 0.91103 0.91153 0.91511 0.90738 0.76954 0.75404 0.86939 0.86964 0.86947 0.84300 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.53 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.35 -4.00 10.15 -39.26 -0.40 -4.40 16 4 C 0.47 6.31 6.84 36.01 0.25 6.56 16 5 O -0.50 -7.71 15.59 -18.75 -0.29 -8.00 16 6 C 0.16 2.21 2.89 -69.08 -0.20 2.01 16 7 H 0.14 1.85 7.58 -51.93 -0.39 1.46 16 8 C 0.07 0.78 6.78 37.16 0.25 1.03 16 9 O -0.57 -6.34 13.09 -35.23 -0.46 -6.80 16 10 N -0.72 -11.25 4.85 -56.00 -0.27 -11.52 16 11 C 0.56 10.83 7.71 -12.52 -0.10 10.73 16 12 O -0.51 -11.31 13.44 5.27 0.07 -11.24 16 13 C -0.18 -3.55 5.89 -104.75 -0.62 -4.17 16 14 C -0.06 -0.96 9.53 -39.20 -0.37 -1.34 16 15 C -0.19 -2.97 10.02 -39.59 -0.40 -3.37 16 16 C -0.07 -1.29 10.03 -39.54 -0.40 -1.69 16 17 C -0.15 -3.22 9.22 -39.38 -0.36 -3.59 16 18 C -0.05 -1.23 6.14 -38.40 -0.24 -1.47 16 19 S 0.18 4.81 18.56 -107.50 -2.00 2.82 16 20 C -0.59 -16.21 9.00 30.94 0.28 -15.93 16 21 H 0.09 2.37 4.98 -52.49 -0.26 2.11 16 22 C 0.08 2.26 5.49 -17.46 -0.10 2.16 16 23 N -0.86 -24.41 13.22 55.49 0.73 -23.67 16 24 Si 0.92 20.52 29.55 -169.99 -5.02 15.49 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.38 2.50 9.12 45.56 0.42 2.92 16 36 H 0.41 6.09 5.82 -40.82 -0.24 5.86 16 37 H 0.11 1.58 6.40 -52.49 -0.34 1.25 16 38 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.14 3.02 5.04 -52.49 -0.26 2.75 16 41 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -33.46 366.12 -7.52 -40.98 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.02 Total: 9.63 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.39 Total: -8.81 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.46 Total: -35.20 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -1.08 Total: -30.44 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -2.00 Total: 2.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.46 -7.52 -40.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782763104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.366 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds