Wall clock time and date at job start Tue Mar 31 2020 22:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45198 * 109.47014 * 2 1 4 4 C 1.34230 * 116.99633 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00446 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99612 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.47589 * 60.00311 * 6 4 3 8 8 C 1.53004 * 109.47288 * 300.00087 * 6 4 3 9 9 O 1.42903 * 109.46925 * 305.00465 * 8 6 4 10 10 N 1.46505 * 109.47220 * 180.02562 * 6 4 3 11 11 C 1.34774 * 120.00150 * 204.99919 * 10 6 4 12 12 O 1.21611 * 119.99964 * 359.97438 * 11 10 6 13 13 C 1.47433 * 119.99869 * 179.97438 * 11 10 6 14 14 C 1.39681 * 120.21363 * 0.02930 * 13 11 10 15 15 C 1.37805 * 119.93452 * 179.97438 * 14 13 11 16 16 C 1.38654 * 120.38625 * 0.02562 * 15 14 13 17 17 C 1.37919 * 120.43362 * 0.02562 * 16 15 14 18 18 C 1.39103 * 120.05168 * 359.97438 * 17 16 15 19 19 S 1.76206 * 120.18762 * 180.02562 * 18 17 16 20 20 C 1.76190 * 99.99940 * 6.84043 * 19 18 17 21 21 H 1.07998 * 120.00270 * 5.65109 * 20 19 18 22 22 C 1.38809 * 120.00047 * 185.65490 * 20 19 18 23 23 N 1.31555 * 120.00018 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00216 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47032 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47010 * 119.99800 * 24 22 20 27 27 H 1.48504 * 109.47072 * 239.99841 * 24 22 20 28 28 H 1.08995 * 109.46721 * 299.99635 * 1 2 3 29 29 H 1.08998 * 109.47308 * 59.99188 * 1 2 3 30 30 H 1.08995 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46522 * 240.00786 * 2 1 3 32 32 H 1.08998 * 109.47308 * 120.00812 * 2 1 3 33 33 H 1.08994 * 109.46995 * 65.00134 * 8 6 4 34 34 H 1.08997 * 109.47082 * 185.00102 * 8 6 4 35 35 H 0.96703 * 113.99773 * 180.02562 * 9 8 6 36 36 H 0.97000 * 119.99614 * 25.00132 * 10 6 4 37 37 H 1.07997 * 120.03131 * 359.97438 * 14 13 11 38 38 H 1.08008 * 119.80557 * 180.02562 * 15 14 13 39 39 H 1.08001 * 119.78248 * 180.28485 * 16 15 14 40 40 H 1.07998 * 119.97190 * 179.97438 * 17 16 15 41 41 H 0.96996 * 120.00225 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5845 3.4693 0.8911 8 6 3.4496 3.6847 -1.2480 9 8 3.7889 2.9282 -2.4120 10 7 5.3838 2.8608 0.0010 11 6 6.1121 3.8816 0.4947 12 8 5.5548 4.8667 0.9399 13 6 7.5844 3.8042 0.4951 14 6 8.2290 2.6752 -0.0156 15 6 9.6055 2.6092 -0.0129 16 6 10.3570 3.6579 0.4950 17 6 9.7366 4.7796 1.0041 18 6 8.3482 4.8654 1.0103 19 16 7.5519 6.2970 1.6592 20 6 8.9546 7.3243 1.9448 21 1 9.9345 7.0012 1.6258 22 6 8.8002 8.5488 2.5800 23 7 7.6065 8.9426 2.9683 24 14 10.2874 9.6377 2.8835 25 1 11.5049 8.9709 2.3560 26 1 10.0970 10.9391 2.1940 27 1 10.4426 9.8684 4.3423 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.3689 3.8197 -1.2047 34 1 3.9359 4.6592 -1.2935 35 1 3.5199 3.3432 -3.2430 36 1 5.8282 2.0752 -0.3544 37 1 7.6493 1.8549 -0.4123 38 1 10.1018 1.7354 -0.4088 39 1 11.4353 3.5978 0.4880 40 1 10.3292 5.5919 1.3982 41 1 7.4987 9.7981 3.4125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782763104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:34 Heat of formation + Delta-G solvation = -163.794280 kcal Electronic energy + Delta-G solvation = -26678.585570 eV Core-core repulsion = 22649.200157 eV Total energy + Delta-G solvation = -4029.385413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.99105 -40.89484 -39.13195 -38.06440 -37.68889 -35.53930 -34.75182 -32.96125 -32.33908 -31.81006 -30.31622 -27.82828 -25.86016 -24.97997 -23.72728 -23.38831 -22.13636 -21.43383 -20.22086 -19.22865 -18.66528 -18.39279 -17.82110 -17.62201 -17.35786 -17.03922 -16.62273 -16.14983 -15.89234 -15.56690 -15.34476 -15.24368 -15.09538 -14.69588 -14.50109 -14.38372 -13.89401 -13.63292 -13.46910 -13.31997 -13.04145 -12.99592 -12.88041 -12.86298 -12.55153 -12.49790 -12.04625 -11.74144 -11.55837 -11.54687 -11.43364 -11.34276 -11.03077 -10.43962 -10.33619 -9.95432 -9.81856 -8.46061 -8.44374 -6.22672 -0.01143 0.52121 0.97659 1.23713 1.28315 1.36553 1.46708 1.64715 1.92851 2.14069 2.25156 2.87523 3.01154 3.15667 3.24971 3.41918 3.83577 3.86552 3.98922 4.01930 4.07200 4.25178 4.28203 4.34230 4.40367 4.55901 4.60470 4.62259 4.81186 4.84118 4.93890 5.08094 5.10853 5.21823 5.35516 5.37235 5.46191 5.54849 5.66280 6.08918 6.16527 6.41623 6.53399 6.77768 6.97424 7.18409 8.61258 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016504 B = 0.002913 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.144802 B = 9608.929256 C =10679.755279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.351 6.351 4 C 0.481 3.519 5 O -0.523 6.523 6 C 0.153 3.847 7 H 0.136 0.864 8 C 0.077 3.923 9 O -0.582 6.582 10 N -0.702 5.702 11 C 0.558 3.442 12 O -0.543 6.543 13 C -0.182 4.182 14 C -0.056 4.056 15 C -0.158 4.158 16 C -0.066 4.066 17 C -0.174 4.174 18 C -0.068 4.068 19 S 0.075 5.925 20 C -0.602 4.602 21 H 0.095 0.905 22 C 0.026 3.974 23 N -0.903 5.903 24 Si 0.992 3.008 25 H -0.258 1.258 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.403 0.597 36 H 0.414 0.586 37 H 0.148 0.852 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.123 0.877 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 -17.494 -9.903 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.267 6.267 4 C 0.324 3.676 5 O -0.412 6.412 6 C 0.046 3.954 7 H 0.154 0.846 8 C -0.002 4.002 9 O -0.392 6.392 10 N -0.359 5.359 11 C 0.348 3.652 12 O -0.422 6.422 13 C -0.195 4.195 14 C -0.075 4.075 15 C -0.181 4.181 16 C -0.087 4.087 17 C -0.199 4.199 18 C -0.187 4.187 19 S 0.334 5.666 20 C -0.749 4.749 21 H 0.112 0.888 22 C -0.180 4.180 23 N -0.538 5.538 24 Si 0.813 3.187 25 H -0.181 1.181 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.254 0.746 36 H 0.253 0.747 37 H 0.165 0.835 38 H 0.180 0.820 39 H 0.169 0.831 40 H 0.140 0.860 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.500 -16.841 -8.721 21.678 hybrid contribution 1.938 0.632 -0.255 2.054 sum -8.562 -16.209 -8.976 20.411 Atomic orbital electron populations 1.21834 0.90141 1.04505 1.03826 1.23376 0.97194 0.78608 1.02788 1.86467 1.22519 1.34357 1.83368 1.23232 0.81531 0.91477 0.71353 1.90628 1.60992 1.43208 1.46379 1.20595 0.81795 0.90913 1.02059 0.84636 1.22429 1.00755 0.93344 0.83664 1.86406 1.84941 1.50557 1.17266 1.45409 1.04614 1.21547 1.64317 1.18373 0.87531 0.82298 0.77034 1.90789 1.72443 1.31861 1.47152 1.19323 0.91465 0.97734 1.11023 1.21391 0.95869 0.94977 0.95302 1.21291 0.93060 1.00281 1.03496 1.21547 1.01171 0.91866 0.94075 1.21470 0.92982 1.00706 1.04723 1.22972 0.97716 0.99140 0.98832 1.84794 1.09717 1.03780 1.68284 1.24278 0.97951 1.07156 1.45466 0.88782 1.26112 1.00161 0.98470 0.93260 1.70119 1.24251 1.21982 1.37457 0.85007 0.77658 0.77600 0.78385 1.18149 1.19590 1.19572 0.91333 0.91046 0.87994 0.90955 0.91237 0.88717 0.92538 0.74603 0.74732 0.83457 0.81951 0.83067 0.85976 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 71.98 0.74 -0.68 16 2 C 0.05 0.86 6.19 71.98 0.45 1.30 16 3 O -0.35 -7.43 10.15 -51.42 -0.52 -7.95 16 4 C 0.48 12.28 6.84 71.24 0.49 12.76 16 5 O -0.52 -15.37 15.59 21.97 0.34 -15.03 16 6 C 0.15 4.08 2.89 44.25 0.13 4.21 16 7 H 0.14 3.72 7.58 -2.39 -0.02 3.70 16 8 C 0.08 1.71 6.78 71.98 0.49 2.20 16 9 O -0.58 -11.91 13.09 -148.98 -1.95 -13.86 16 10 N -0.70 -21.56 4.85 -449.35 -2.18 -23.74 16 11 C 0.56 21.98 7.71 86.67 0.67 22.65 16 12 O -0.54 -25.52 13.44 -4.06 -0.05 -25.57 16 13 C -0.18 -7.25 5.89 -19.95 -0.12 -7.36 16 14 C -0.06 -1.67 9.53 22.52 0.21 -1.46 16 15 C -0.16 -4.23 10.02 22.27 0.22 -4.00 16 16 C -0.07 -2.03 10.03 22.29 0.22 -1.80 16 17 C -0.17 -7.24 9.22 22.40 0.21 -7.03 16 18 C -0.07 -3.21 6.14 23.04 0.14 -3.07 16 19 S 0.08 4.26 18.56 -56.49 -1.05 3.21 16 20 C -0.60 -34.70 9.00 67.96 0.61 -34.09 16 21 H 0.09 5.13 4.98 -2.91 -0.01 5.12 16 22 C 0.03 1.46 5.49 84.87 0.47 1.93 16 23 N -0.90 -54.42 13.22 21.65 0.29 -54.13 16 24 Si 0.99 43.50 29.55 68.60 2.03 45.52 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 1.14 8.13 -2.39 -0.02 1.13 16 32 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.40 4.47 9.12 -74.06 -0.68 3.79 16 36 H 0.41 11.56 5.82 -92.71 -0.54 11.02 16 37 H 0.15 3.44 6.40 -2.91 -0.02 3.42 16 38 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 40 H 0.12 5.46 5.04 -2.91 -0.01 5.44 16 41 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -78.68 366.12 1.72 -76.97 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.11 Total: 29.04 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 4.93 Total: -14.46 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -1.89 Total: -77.87 kcal Atomic # 8 Polarization: -60.23 SS G_CDS: -2.18 Total: -62.41 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.05 Total: 3.21 kcal Total: -78.68 1.72 -76.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782763104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.829 kcal (2) G-P(sol) polarization free energy of solvation -78.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds