Wall clock time and date at job start Tue Mar 31 2020 22:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 O 1.21226 * 120.00285 * 359.97438 * 3 2 1 5 5 C 1.47392 * 120.00170 * 180.02562 * 3 2 1 6 6 C 1.39805 * 120.02627 * 359.71870 * 5 3 2 7 7 C 1.37777 * 119.97249 * 179.81441 * 6 5 3 8 8 C 1.39566 * 120.02547 * 0.44739 * 7 6 5 9 9 C 1.48070 * 119.97110 * 179.76821 * 8 7 6 10 10 O 1.21524 * 119.99910 * 180.02562 * 9 8 7 11 11 N 1.34781 * 119.99847 * 0.02562 * 9 8 7 12 12 S 1.65594 * 119.99777 * 180.02562 * 11 9 8 13 13 O 1.42098 * 104.27623 * 181.07245 * 12 11 9 14 14 O 1.42103 * 104.27698 * 308.92818 * 12 11 9 15 15 C 1.81394 * 104.45336 * 64.99893 * 12 11 9 16 16 C 1.53002 * 109.47372 * 179.97438 * 15 12 11 17 17 C 1.50697 * 109.47260 * 180.02562 * 16 15 12 18 18 H 1.08003 * 120.00040 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00186 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99897 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47060 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46892 * 120.00265 * 21 19 17 24 24 H 1.48503 * 109.47333 * 240.00061 * 21 19 17 25 25 C 1.39566 * 120.05691 * 359.78539 * 8 7 6 26 26 C 1.37768 * 120.02914 * 0.02562 * 25 8 7 27 27 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 28 28 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 120.00219 * 2 1 3 31 31 H 1.09000 * 109.47050 * 240.00048 * 2 1 3 32 32 H 1.08009 * 120.01271 * 0.02562 * 6 5 3 33 33 H 1.08001 * 119.98698 * 180.18938 * 7 6 5 34 34 H 0.97000 * 119.99752 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.47121 * 300.00000 * 15 12 11 36 36 H 1.08999 * 109.47212 * 60.00157 * 15 12 11 37 37 H 1.09002 * 109.47056 * 300.00112 * 16 15 12 38 38 H 1.08999 * 109.46765 * 59.99956 * 16 15 12 39 39 H 0.97001 * 120.00410 * 179.97438 * 20 19 17 40 40 H 1.08007 * 119.98460 * 179.97438 * 25 8 7 41 41 H 1.08003 * 120.01596 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2446 2.3422 -0.0005 5 6 3.4814 1.6903 -0.0006 6 6 4.3905 0.6281 0.0048 7 6 5.7448 0.8812 0.0004 8 6 6.2093 2.1973 0.0000 9 6 7.6650 2.4680 0.0005 10 8 8.0700 3.6137 0.0006 11 7 8.5409 1.4435 0.0008 12 16 10.1689 1.7462 0.0019 13 8 10.7651 0.4566 -0.0238 14 8 10.3560 2.6613 -1.0691 15 6 10.4773 2.5584 1.5943 16 6 11.9655 2.8920 1.7170 17 6 12.2217 3.5662 3.0401 18 1 11.4048 3.7398 3.7249 19 6 13.4991 3.9614 3.3765 20 7 14.4938 3.7505 2.5425 21 14 13.8166 4.7978 5.0164 22 1 12.5405 4.9173 5.7664 23 1 14.7804 3.9895 5.8058 24 1 14.3816 6.1508 4.7809 25 6 5.3028 3.2585 -0.0005 26 6 3.9481 3.0081 0.0000 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 4.0312 -0.3905 0.0090 33 1 6.4472 0.0609 0.0015 34 1 8.2175 0.5290 0.0010 35 1 9.8927 3.4765 1.6531 36 1 10.1871 1.8903 2.4051 37 1 12.5497 1.9737 1.6583 38 1 12.2561 3.5600 0.9061 39 1 15.3924 4.0289 2.7789 40 1 5.6635 4.2766 -0.0004 41 1 3.2468 3.8295 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783428985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:38 Heat of formation + Delta-G solvation = -158.522277 kcal Electronic energy + Delta-G solvation = -25970.296979 eV Core-core repulsion = 21941.140177 eV Total energy + Delta-G solvation = -4029.156802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78758 -40.84456 -39.03427 -38.28543 -37.25841 -36.00358 -35.81968 -34.01710 -33.18789 -32.47796 -32.02999 -27.68351 -27.25695 -25.01893 -23.68030 -23.51327 -22.77378 -20.83527 -20.62740 -19.80475 -19.17006 -18.38418 -17.96368 -17.38594 -16.89073 -16.74723 -16.53276 -16.46217 -16.40291 -16.27175 -15.45640 -15.24945 -15.20207 -14.65412 -14.50558 -14.30884 -13.86001 -13.83593 -13.75353 -13.52474 -13.38880 -13.27886 -13.10257 -12.97832 -12.84869 -12.64123 -12.35986 -12.26346 -12.16423 -12.06952 -11.97878 -11.78359 -11.61335 -11.09152 -10.76954 -10.66862 -10.23859 -10.13932 -8.28088 -6.41721 -1.05927 -0.88588 0.25052 0.82503 1.31766 1.39706 1.40825 1.53961 1.61146 2.35919 2.52369 2.69818 2.82952 2.96880 3.05491 3.16814 3.63381 3.71942 3.82086 3.98007 4.03061 4.04408 4.16746 4.19512 4.33170 4.38024 4.57390 4.68780 4.80516 4.89381 5.04465 5.06316 5.10300 5.10505 5.22448 5.23638 5.24199 5.37279 5.58393 5.66059 5.67422 6.03324 6.28238 6.48201 6.71005 7.28101 8.84357 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019170 B = 0.002244 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.236477 B =12472.858598 C =13168.398485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.166 4.166 3 C 0.394 3.606 4 O -0.488 6.488 5 C -0.147 4.147 6 C -0.062 4.062 7 C -0.084 4.084 8 C -0.123 4.123 9 C 0.577 3.423 10 O -0.523 6.523 11 N -1.032 6.032 12 S 2.603 3.397 13 O -0.963 6.963 14 O -0.976 6.976 15 C -0.579 4.579 16 C 0.022 3.978 17 C -0.539 4.539 18 H 0.073 0.927 19 C -0.003 4.003 20 N -0.931 5.931 21 Si 0.975 3.025 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.280 1.280 25 C -0.079 4.079 26 C -0.082 4.082 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.190 0.810 33 H 0.173 0.827 34 H 0.449 0.551 35 H 0.133 0.867 36 H 0.154 0.846 37 H 0.018 0.982 38 H 0.005 0.995 39 H 0.268 0.732 40 H 0.135 0.865 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.065 -13.560 -3.918 31.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.203 4.203 3 C 0.274 3.726 4 O -0.365 6.365 5 C -0.149 4.149 6 C -0.080 4.080 7 C -0.103 4.103 8 C -0.128 4.128 9 C 0.367 3.633 10 O -0.397 6.397 11 N -0.799 5.799 12 S 2.702 3.298 13 O -0.954 6.954 14 O -0.966 6.966 15 C -0.712 4.712 16 C -0.017 4.017 17 C -0.578 4.578 18 H 0.091 0.909 19 C -0.202 4.202 20 N -0.571 5.571 21 Si 0.798 3.202 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.205 1.205 25 C -0.098 4.098 26 C -0.100 4.100 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.207 0.793 33 H 0.190 0.810 34 H 0.291 0.709 35 H 0.151 0.849 36 H 0.172 0.828 37 H 0.036 0.964 38 H 0.024 0.976 39 H 0.077 0.923 40 H 0.152 0.848 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -27.450 -12.485 -4.695 30.520 hybrid contribution 0.503 0.831 1.015 1.405 sum -26.947 -11.654 -3.680 29.589 Atomic orbital electron populations 1.21636 0.94451 1.02844 1.01697 1.22120 0.97688 0.92963 1.07486 1.23237 0.87093 0.92795 0.69516 1.90536 1.59044 1.49426 1.37532 1.21036 0.96057 0.94451 1.03319 1.21839 0.91138 1.00602 0.94406 1.21746 0.97584 0.94822 0.96114 1.19946 0.89969 0.96504 1.06367 1.18800 0.88211 0.83534 0.72802 1.90982 1.80341 1.21768 1.46637 1.54783 1.26882 1.17945 1.80272 1.05330 0.72495 0.74172 0.77791 1.93573 1.74230 1.39641 1.87917 1.93557 1.83659 1.66638 1.52774 1.30246 1.07274 1.14077 1.19629 1.18843 0.87353 0.96980 0.98558 1.21497 0.94498 1.39304 1.02510 0.90859 1.26104 0.95925 0.96496 1.01671 1.70094 1.00915 1.47944 1.38136 0.85253 0.78727 0.77866 0.78323 1.18172 1.19943 1.20526 1.21316 0.92612 0.99666 0.96169 1.21453 0.94781 0.97529 0.96279 0.93620 0.93622 0.89788 0.85127 0.85138 0.79316 0.80983 0.70899 0.84881 0.82823 0.96362 0.97642 0.92309 0.84756 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.20 71.98 0.66 -0.41 16 2 C -0.17 -0.60 5.03 29.85 0.15 -0.45 16 3 C 0.39 4.76 7.12 28.10 0.20 4.96 16 4 O -0.49 -10.05 15.96 -2.86 -0.05 -10.10 16 5 C -0.15 -1.74 5.87 -20.11 -0.12 -1.86 16 6 C -0.06 -0.36 9.46 22.54 0.21 -0.14 16 7 C -0.08 -0.75 9.52 22.48 0.21 -0.54 16 8 C -0.12 -2.20 5.88 -20.03 -0.12 -2.32 16 9 C 0.58 14.66 7.52 86.85 0.65 15.31 16 10 O -0.52 -18.18 14.43 12.59 0.18 -17.99 16 11 N -1.03 -23.10 5.55 -175.45 -0.97 -24.07 16 12 S 2.60 90.52 5.11 -56.49 -0.29 90.23 16 13 O -0.96 -35.55 18.08 -127.65 -2.31 -37.86 16 14 O -0.98 -42.66 17.04 -120.72 -2.06 -44.72 16 15 C -0.58 -22.49 5.82 71.98 0.42 -22.07 16 16 C 0.02 1.14 4.98 29.85 0.15 1.29 16 17 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 18 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 19 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 20 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 21 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 C -0.08 -1.50 9.58 22.48 0.22 -1.29 16 26 C -0.08 -1.35 9.58 22.54 0.22 -1.14 16 27 H 0.04 0.47 8.10 -2.39 -0.02 0.45 16 28 H 0.04 0.47 8.10 -2.39 -0.02 0.45 16 29 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.13 -0.19 8.08 -2.39 -0.02 -0.21 16 31 H 0.13 -0.20 8.09 -2.39 -0.02 -0.22 16 32 H 0.19 -0.67 7.03 -2.91 -0.02 -0.69 16 33 H 0.17 0.28 6.38 -2.91 -0.02 0.27 16 34 H 0.45 5.34 6.81 -96.75 -0.66 4.68 16 35 H 0.13 5.14 7.19 -2.39 -0.02 5.13 16 36 H 0.15 4.86 8.14 -2.39 -0.02 4.84 16 37 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 38 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.13 2.83 7.64 -2.91 -0.02 2.80 16 41 H 0.14 2.31 7.64 -2.91 -0.02 2.29 16 Total: -1.00 -87.81 368.12 0.78 -87.02 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.41 Total: 6.52 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 3.55 Total: -38.40 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -0.69 Total: -80.47 kcal Atomic # 8 Polarization: -106.44 SS G_CDS: -4.23 Total: -110.67 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 90.52 SS G_CDS: -0.29 Total: 90.23 kcal Total: -87.81 0.78 -87.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783428985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.497 kcal (2) G-P(sol) polarization free energy of solvation -87.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds