Wall clock time and date at job start Tue Mar 31 2020 22:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99924 * 2 1 4 4 N 1.46506 * 109.47214 * 124.99983 * 3 2 1 5 5 S 1.65597 * 120.00079 * 164.72113 * 4 3 2 6 6 O 1.42100 * 106.40448 * 178.54099 * 5 4 3 7 7 O 1.42103 * 106.40365 * 311.46606 * 5 4 3 8 8 C 1.76197 * 107.21750 * 65.00357 * 5 4 3 9 9 C 1.38372 * 119.84909 * 269.73004 * 8 5 4 10 10 C 1.37942 * 120.14990 * 179.72718 * 9 8 5 11 11 C 1.39625 * 119.84854 * 0.55965 * 10 9 8 12 12 C 1.47724 * 120.15358 * 179.68727 * 11 10 9 13 13 O 1.21470 * 120.00612 * 180.02562 * 12 11 10 14 14 O 1.34710 * 119.99824 * 0.02562 * 12 11 10 15 15 C 1.45207 * 117.00284 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47023 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.46731 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00013 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99898 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99647 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99787 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47143 * 90.00248 * 21 19 17 23 23 H 1.48506 * 109.46838 * 209.99631 * 21 19 17 24 24 H 1.48489 * 109.47336 * 329.99703 * 21 19 17 25 25 C 1.39630 * 119.70053 * 359.71381 * 11 10 9 26 26 C 1.37944 * 119.84665 * 359.97438 * 25 11 10 27 27 H 1.07991 * 119.99957 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99693 * 359.97438 * 1 2 3 29 29 H 1.07990 * 120.00018 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47652 * 5.00140 * 3 2 1 31 31 H 1.09000 * 109.47217 * 245.00246 * 3 2 1 32 32 H 0.97005 * 119.99811 * 345.00092 * 4 3 2 33 33 H 1.07999 * 119.92255 * 359.97201 * 9 8 5 34 34 H 1.08002 * 120.07604 * 180.27096 * 10 9 8 35 35 H 1.08991 * 109.46989 * 300.00509 * 15 14 12 36 36 H 1.09003 * 109.46603 * 60.00141 * 15 14 12 37 37 H 1.09000 * 109.47415 * 299.99583 * 16 15 14 38 38 H 1.08996 * 109.46964 * 60.00496 * 16 15 14 39 39 H 0.97010 * 119.99605 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.07530 * 179.97438 * 25 11 10 41 41 H 1.07999 * 119.92391 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 16 4.2107 2.4541 1.1764 6 8 4.9057 2.2438 2.3979 7 8 4.8435 2.4110 -0.0952 8 6 3.4533 4.0401 1.3017 9 6 3.1325 4.7427 0.1537 10 6 2.5343 5.9823 0.2445 11 6 2.2632 6.5329 1.4986 12 6 1.6291 7.8630 1.6038 13 8 1.3949 8.3397 2.6962 14 8 1.3105 8.5473 0.4880 15 6 0.6894 9.8476 0.6669 16 6 0.4034 10.4688 -0.7018 17 6 -0.2406 11.8186 -0.5160 18 1 -0.4268 12.1958 0.4787 19 6 -0.5921 12.5719 -1.6160 20 7 -0.3648 12.1127 -2.8273 21 14 -1.3897 14.2453 -1.3857 22 1 -0.3368 15.2903 -1.3168 23 1 -2.2911 14.5259 -2.5321 24 1 -2.1752 14.2501 -0.1256 25 6 2.5948 5.8209 2.6531 26 6 3.1868 4.5794 2.5477 27 1 -0.5399 -0.9352 0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 2.8994 0.6897 1.8523 33 1 3.3474 4.3179 -0.8157 34 1 2.2805 6.5278 -0.6524 35 1 -0.2448 9.7315 1.2161 36 1 1.3619 10.4974 1.2271 37 1 1.3380 10.5851 -1.2505 38 1 -0.2688 9.8192 -1.2622 39 1 -0.6118 12.6430 -3.6012 40 1 2.3882 6.2413 3.6263 41 1 3.4433 4.0275 3.4398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803382287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:29 Heat of formation + Delta-G solvation = -119.356095 kcal Electronic energy + Delta-G solvation = -25719.369137 eV Core-core repulsion = 21691.910708 eV Total energy + Delta-G solvation = -4027.458429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.46991 -38.93679 -37.68547 -36.83127 -36.27779 -36.23769 -33.44759 -32.87147 -32.08333 -31.47965 -30.25954 -26.13412 -25.78657 -24.41339 -23.15925 -21.41421 -20.84406 -20.70170 -19.84752 -18.57941 -17.98020 -17.64430 -16.96221 -16.71759 -16.21251 -16.11332 -15.64104 -15.13285 -15.07139 -14.85559 -14.58794 -14.17074 -13.91931 -13.81743 -13.76378 -13.40679 -12.97988 -12.78048 -12.49342 -12.46108 -12.41986 -12.40806 -11.64376 -11.56376 -11.37007 -11.35056 -11.13633 -10.84459 -10.79792 -10.48273 -10.37291 -9.88887 -9.81390 -9.73163 -9.71356 -9.44736 -9.37907 -8.50517 -6.16569 -4.21291 -0.18467 0.10878 0.92205 1.64950 2.26609 2.70240 2.87268 3.23714 3.24701 3.31071 3.34925 3.44046 3.89272 4.24245 4.32854 4.37854 4.48940 4.54026 4.75188 4.84232 4.90598 5.02105 5.03763 5.20317 5.23470 5.26066 5.45770 5.51000 5.65507 5.68098 5.93365 5.97242 5.97525 6.05075 6.11451 6.35515 6.45724 6.52013 6.74619 7.45930 7.53036 7.77534 7.97091 8.16049 8.84007 9.43554 10.94889 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017245 B = 0.002072 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.240829 B =13512.819708 C =14190.113637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.170 4.170 3 C 0.140 3.860 4 N -1.114 6.114 5 S 2.697 3.303 6 O -0.955 6.955 7 O -0.951 6.951 8 C -0.658 4.658 9 C -0.035 4.035 10 C -0.082 4.082 11 C -0.058 4.058 12 C 0.494 3.506 13 O -0.504 6.504 14 O -0.349 6.349 15 C 0.075 3.925 16 C 0.025 3.975 17 C -0.528 4.528 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.081 4.081 26 C -0.031 4.031 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.420 0.580 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.264 0.736 40 H 0.148 0.852 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.239 -26.219 6.968 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.190 4.190 3 C 0.015 3.985 4 N -0.874 5.874 5 S 2.786 3.214 6 O -0.945 6.945 7 O -0.941 6.941 8 C -0.745 4.745 9 C -0.054 4.054 10 C -0.101 4.101 11 C -0.059 4.059 12 C 0.338 3.662 13 O -0.394 6.394 14 O -0.265 6.265 15 C 0.003 3.997 16 C -0.012 4.012 17 C -0.566 4.566 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.728 3.272 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.100 4.100 26 C -0.050 4.050 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.135 0.865 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.255 0.745 33 H 0.167 0.833 34 H 0.173 0.827 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.166 0.834 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.037 -25.993 6.874 27.556 hybrid contribution -1.189 1.350 0.494 1.866 sum 4.848 -24.642 7.368 26.173 Atomic orbital electron populations 1.24041 0.95810 1.02657 0.97917 1.22907 0.96013 0.97902 1.02173 1.20489 0.92101 0.97013 0.88939 1.55521 1.50290 1.49253 1.32343 1.01856 0.72745 0.73006 0.73755 1.93610 1.69874 1.85122 1.45885 1.93610 1.71910 1.86228 1.42333 1.31128 1.18749 1.24750 0.99839 1.20976 0.92927 0.94010 0.97482 1.21764 0.95426 0.95041 0.97879 1.19709 0.98818 0.92416 0.95004 1.21082 0.76381 0.85430 0.83321 1.90819 1.50601 1.69291 1.28679 1.86577 1.71479 1.34388 1.34015 1.23763 0.95727 0.77088 1.03137 1.19185 0.98126 0.95053 0.88859 1.20957 1.40921 1.01612 0.93126 0.92214 1.24983 0.95618 0.98486 0.95036 1.69970 1.47055 1.38007 0.97734 0.86456 0.79291 0.83601 0.77875 1.20435 1.21008 1.19712 1.21435 0.96024 0.93840 0.98711 1.20845 0.93217 0.94913 0.96062 0.87824 0.87965 0.86479 0.90906 0.89035 0.74464 0.83283 0.82748 0.92001 0.91996 0.95254 0.95261 0.92636 0.83408 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 14.32 29.01 0.42 -0.30 16 2 C -0.17 -0.78 9.66 -36.03 -0.35 -1.13 16 3 C 0.14 0.74 6.66 -5.19 -0.03 0.70 16 4 N -1.11 -6.26 5.99 -11.65 -0.07 -6.33 16 5 S 2.70 23.18 5.74 -107.50 -0.62 22.57 16 6 O -0.95 -10.49 17.27 -57.17 -0.99 -11.48 16 7 O -0.95 -10.66 16.73 -57.17 -0.96 -11.61 16 8 C -0.66 -6.14 5.95 -39.49 -0.24 -6.37 16 9 C -0.03 -0.34 9.50 -39.64 -0.38 -0.71 16 10 C -0.08 -0.95 9.62 -39.17 -0.38 -1.33 16 11 C -0.06 -0.78 5.87 -104.98 -0.62 -1.39 16 12 C 0.49 8.47 7.90 34.61 0.27 8.74 16 13 O -0.50 -9.66 16.14 -19.24 -0.31 -9.97 16 14 O -0.35 -6.65 9.47 -40.52 -0.38 -7.03 16 15 C 0.08 1.61 5.41 37.16 0.20 1.81 16 16 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 17 C -0.53 -14.54 9.11 -34.44 -0.31 -14.85 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 21 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C -0.08 -0.92 9.60 -39.17 -0.38 -1.30 16 26 C -0.03 -0.30 9.50 -39.64 -0.38 -0.67 16 27 H 0.10 0.35 8.06 -52.49 -0.42 -0.07 16 28 H 0.10 0.43 7.84 -52.48 -0.41 0.02 16 29 H 0.12 0.44 8.06 -52.49 -0.42 0.02 16 30 H 0.07 0.33 7.79 -51.93 -0.40 -0.07 16 31 H 0.09 0.47 7.75 -51.93 -0.40 0.07 16 32 H 0.42 1.61 8.65 -34.47 -0.30 1.31 16 33 H 0.15 1.12 7.60 -52.49 -0.40 0.72 16 34 H 0.15 1.72 7.61 -52.49 -0.40 1.32 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.15 1.56 7.65 -52.49 -0.40 1.16 16 41 H 0.15 1.07 7.60 -52.49 -0.40 0.67 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -34.80 376.60 -9.54 -44.33 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.19 Total: -2.35 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -2.41 Total: -14.72 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.67 Total: -31.47 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -2.64 Total: -40.09 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 23.18 SS G_CDS: -0.62 Total: 22.57 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.80 -9.54 -44.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803382287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.024 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds