Wall clock time and date at job start Tue Mar 31 2020 22:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99924 * 2 1 4 4 N 1.46506 * 109.47214 * 124.99983 * 3 2 1 5 5 S 1.65597 * 120.00079 * 164.72113 * 4 3 2 6 6 O 1.42100 * 106.40448 * 178.54099 * 5 4 3 7 7 O 1.42103 * 106.40365 * 311.46606 * 5 4 3 8 8 C 1.76197 * 107.21750 * 65.00357 * 5 4 3 9 9 C 1.38372 * 119.84909 * 269.73004 * 8 5 4 10 10 C 1.37942 * 120.14990 * 179.72718 * 9 8 5 11 11 C 1.39625 * 119.84854 * 0.55965 * 10 9 8 12 12 C 1.47724 * 120.15358 * 179.68727 * 11 10 9 13 13 O 1.21470 * 120.00612 * 180.02562 * 12 11 10 14 14 O 1.34710 * 119.99824 * 0.02562 * 12 11 10 15 15 C 1.45207 * 117.00284 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47023 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.46731 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00013 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99898 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99647 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99787 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47143 * 90.00248 * 21 19 17 23 23 H 1.48506 * 109.46838 * 209.99631 * 21 19 17 24 24 H 1.48489 * 109.47336 * 329.99703 * 21 19 17 25 25 C 1.39630 * 119.70053 * 359.71381 * 11 10 9 26 26 C 1.37944 * 119.84665 * 359.97438 * 25 11 10 27 27 H 1.07991 * 119.99957 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99693 * 359.97438 * 1 2 3 29 29 H 1.07990 * 120.00018 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47652 * 5.00140 * 3 2 1 31 31 H 1.09000 * 109.47217 * 245.00246 * 3 2 1 32 32 H 0.97005 * 119.99811 * 345.00092 * 4 3 2 33 33 H 1.07999 * 119.92255 * 359.97201 * 9 8 5 34 34 H 1.08002 * 120.07604 * 180.27096 * 10 9 8 35 35 H 1.08991 * 109.46989 * 300.00509 * 15 14 12 36 36 H 1.09003 * 109.46603 * 60.00141 * 15 14 12 37 37 H 1.09000 * 109.47415 * 299.99583 * 16 15 14 38 38 H 1.08996 * 109.46964 * 60.00496 * 16 15 14 39 39 H 0.97010 * 119.99605 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.07530 * 179.97438 * 25 11 10 41 41 H 1.07999 * 119.92391 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 16 4.2107 2.4541 1.1764 6 8 4.9057 2.2438 2.3979 7 8 4.8435 2.4110 -0.0952 8 6 3.4533 4.0401 1.3017 9 6 3.1325 4.7427 0.1537 10 6 2.5343 5.9823 0.2445 11 6 2.2632 6.5329 1.4986 12 6 1.6291 7.8630 1.6038 13 8 1.3949 8.3397 2.6962 14 8 1.3105 8.5473 0.4880 15 6 0.6894 9.8476 0.6669 16 6 0.4034 10.4688 -0.7018 17 6 -0.2406 11.8186 -0.5160 18 1 -0.4268 12.1958 0.4787 19 6 -0.5921 12.5719 -1.6160 20 7 -0.3648 12.1127 -2.8273 21 14 -1.3897 14.2453 -1.3857 22 1 -0.3368 15.2903 -1.3168 23 1 -2.2911 14.5259 -2.5321 24 1 -2.1752 14.2501 -0.1256 25 6 2.5948 5.8209 2.6531 26 6 3.1868 4.5794 2.5477 27 1 -0.5399 -0.9352 0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 2.8994 0.6897 1.8523 33 1 3.3474 4.3179 -0.8157 34 1 2.2805 6.5278 -0.6524 35 1 -0.2448 9.7315 1.2161 36 1 1.3619 10.4974 1.2271 37 1 1.3380 10.5851 -1.2505 38 1 -0.2688 9.8192 -1.2622 39 1 -0.6118 12.6430 -3.6012 40 1 2.3882 6.2413 3.6263 41 1 3.4433 4.0275 3.4398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803382287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:27 Heat of formation + Delta-G solvation = -142.466105 kcal Electronic energy + Delta-G solvation = -25720.371263 eV Core-core repulsion = 21691.910708 eV Total energy + Delta-G solvation = -4028.460554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77005 -39.99062 -38.46514 -37.79953 -37.27532 -37.04688 -35.48939 -33.29421 -33.15819 -32.35619 -32.09379 -27.45135 -26.55230 -25.82402 -24.04672 -23.08846 -22.23053 -21.17460 -20.50088 -19.52453 -19.06476 -18.53050 -18.25615 -17.86519 -17.65573 -17.51885 -16.55813 -16.46430 -15.91993 -15.73090 -15.52238 -15.27836 -14.99277 -14.73740 -14.54521 -14.40063 -14.20431 -14.09690 -13.84194 -13.30498 -13.23059 -13.20346 -13.09758 -12.99546 -12.65709 -12.62660 -12.44802 -12.26193 -11.96276 -11.90561 -11.60367 -11.56412 -11.42680 -10.82774 -10.73820 -10.62774 -10.28116 -10.21460 -8.29055 -6.42113 -1.04248 -0.69356 0.08625 1.09339 1.30369 1.39129 1.41953 1.48912 1.55850 2.03779 2.34542 2.38231 2.67069 3.05783 3.16082 3.38969 3.63905 3.70852 3.87884 4.05676 4.12333 4.17265 4.17874 4.22231 4.40072 4.45180 4.62816 4.67233 4.74047 4.76552 4.80335 4.86856 5.04489 5.12981 5.17253 5.42337 5.43547 5.51053 5.70176 5.73832 5.78384 6.03709 6.07974 6.49744 6.71352 7.27783 8.83479 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017245 B = 0.002072 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.240829 B =13512.819708 C =14190.113637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.175 4.175 3 C 0.130 3.870 4 N -1.100 6.100 5 S 2.722 3.278 6 O -0.976 6.976 7 O -0.975 6.975 8 C -0.651 4.651 9 C -0.032 4.032 10 C -0.086 4.086 11 C -0.081 4.081 12 C 0.496 3.504 13 O -0.529 6.529 14 O -0.354 6.354 15 C 0.090 3.910 16 C 0.031 3.969 17 C -0.551 4.551 18 H 0.065 0.935 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.972 3.028 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.081 4.081 26 C -0.027 4.027 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.431 0.569 33 H 0.172 0.828 34 H 0.153 0.847 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.008 0.992 38 H 0.010 0.990 39 H 0.268 0.732 40 H 0.153 0.847 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.124 -27.395 7.677 28.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.195 4.195 3 C 0.005 3.995 4 N -0.863 5.863 5 S 2.810 3.190 6 O -0.966 6.966 7 O -0.964 6.964 8 C -0.737 4.737 9 C -0.051 4.051 10 C -0.105 4.105 11 C -0.082 4.082 12 C 0.341 3.659 13 O -0.420 6.420 14 O -0.271 6.271 15 C 0.017 3.983 16 C -0.006 4.006 17 C -0.589 4.589 18 H 0.083 0.917 19 C -0.192 4.192 20 N -0.565 5.565 21 Si 0.796 3.204 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.100 4.100 26 C -0.045 4.045 27 H 0.131 0.869 28 H 0.120 0.880 29 H 0.143 0.857 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.268 0.732 33 H 0.189 0.811 34 H 0.171 0.829 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.171 0.829 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.929 -27.184 7.602 28.843 hybrid contribution -1.124 1.543 0.264 1.927 sum 4.805 -25.641 7.866 27.247 Atomic orbital electron populations 1.24181 0.95878 1.03167 0.97364 1.22938 0.96089 0.97845 1.02602 1.20677 0.92207 0.97880 0.88686 1.55231 1.49734 1.48423 1.32945 1.01057 0.72652 0.72671 0.72629 1.93581 1.70959 1.85348 1.46697 1.93583 1.72958 1.86508 1.43391 1.31378 1.17475 1.25081 0.99755 1.21214 0.91978 0.93104 0.98758 1.21806 0.95694 0.95813 0.97152 1.19585 1.01002 0.90994 0.96664 1.21717 0.75606 0.86267 0.82268 1.90795 1.51855 1.70132 1.29201 1.86555 1.71721 1.33465 1.35322 1.23280 0.96109 0.78342 1.00557 1.18985 0.96404 0.94689 0.90502 1.21361 1.41257 1.02638 0.93596 0.91676 1.25944 0.96021 1.02634 0.94614 1.70088 1.47994 1.39745 0.98649 0.85336 0.78429 0.78427 0.78198 1.19623 1.20361 1.18739 1.21553 0.95900 0.94310 0.98219 1.21136 0.92105 0.94145 0.97156 0.86883 0.88018 0.85666 0.90141 0.88885 0.73164 0.81053 0.82916 0.91767 0.91948 0.97389 0.97200 0.92293 0.82920 0.80795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 14.32 67.78 0.97 -0.18 16 2 C -0.18 -1.25 9.66 25.64 0.25 -1.00 16 3 C 0.13 1.10 6.66 85.63 0.57 1.67 16 4 N -1.10 -9.85 5.99 -190.78 -1.14 -10.99 16 5 S 2.72 41.16 5.74 -56.49 -0.32 40.84 16 6 O -0.98 -19.40 17.27 -128.00 -2.21 -21.61 16 7 O -0.97 -20.07 16.73 -128.00 -2.14 -22.21 16 8 C -0.65 -10.81 5.95 22.33 0.13 -10.67 16 9 C -0.03 -0.56 9.50 22.23 0.21 -0.35 16 10 C -0.09 -1.93 9.62 22.53 0.22 -1.72 16 11 C -0.08 -2.15 5.87 -20.10 -0.12 -2.27 16 12 C 0.50 17.23 7.90 70.33 0.56 17.78 16 13 O -0.53 -20.50 16.14 19.93 0.32 -20.17 16 14 O -0.35 -13.87 9.47 -56.20 -0.53 -14.40 16 15 C 0.09 3.96 5.41 71.98 0.39 4.35 16 16 C 0.03 1.65 5.35 29.85 0.16 1.81 16 17 C -0.55 -30.73 9.11 25.60 0.23 -30.50 16 18 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 19 C 0.01 0.40 5.46 84.65 0.46 0.86 16 20 N -0.93 -54.63 13.29 21.45 0.28 -54.35 16 21 Si 0.97 43.06 29.54 68.60 2.03 45.08 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 C -0.08 -1.74 9.60 22.54 0.22 -1.53 16 26 C -0.03 -0.45 9.50 22.23 0.21 -0.24 16 27 H 0.11 0.55 8.06 -2.92 -0.02 0.53 16 28 H 0.10 0.70 7.84 -2.91 -0.02 0.67 16 29 H 0.13 0.67 8.06 -2.92 -0.02 0.65 16 30 H 0.08 0.56 7.79 -2.39 -0.02 0.55 16 31 H 0.09 0.78 7.75 -2.39 -0.02 0.76 16 32 H 0.43 2.25 8.65 -96.74 -0.84 1.41 16 33 H 0.17 2.22 7.60 -2.91 -0.02 2.19 16 34 H 0.15 3.43 7.61 -2.91 -0.02 3.41 16 35 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 40 H 0.15 3.09 7.65 -2.91 -0.02 3.07 16 41 H 0.17 2.02 7.60 -2.91 -0.02 2.00 16 Total: -1.00 -74.35 376.60 0.96 -73.39 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.22 Total: 6.41 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 4.46 Total: -21.98 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: -0.86 Total: -65.34 kcal Atomic # 8 Polarization: -73.84 SS G_CDS: -4.56 Total: -78.40 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 41.16 SS G_CDS: -0.32 Total: 40.84 kcal Total: -74.35 0.96 -73.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803382287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.073 kcal (2) G-P(sol) polarization free energy of solvation -74.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds