Wall clock time and date at job start Tue Mar 31 2020 23:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42102 * 110.54248 * 2 1 4 4 O 1.42105 * 110.53991 * 223.25543 * 2 1 3 5 5 N 1.65599 * 104.44895 * 111.63117 * 2 1 3 6 6 C 1.39012 * 119.99556 * 294.87715 * 5 2 1 7 7 C 1.39246 * 119.92409 * 104.93562 * 6 5 2 8 8 C 1.37102 * 120.07201 * 179.97438 * 7 6 5 9 9 C 1.39862 * 119.93033 * 0.02562 * 8 7 6 10 10 C 1.47380 * 120.07440 * 180.02562 * 9 8 7 11 11 O 1.21521 * 119.99910 * 359.97438 * 10 9 8 12 12 O 1.34762 * 119.99929 * 180.02562 * 10 9 8 13 13 C 1.45198 * 117.00075 * 176.13442 * 12 10 9 14 14 C 1.50702 * 112.90504 * 307.10332 * 13 12 10 15 15 H 1.08007 * 119.99658 * 114.16474 * 14 13 12 16 16 C 1.37874 * 120.00246 * 294.16245 * 14 13 12 17 17 N 1.31519 * 119.99739 * 7.43344 * 16 14 13 18 18 Si 1.86800 * 120.00215 * 187.42993 * 16 14 13 19 19 H 1.48497 * 109.47088 * 59.99945 * 18 16 14 20 20 H 1.48498 * 109.47061 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46921 * 299.99962 * 18 16 14 22 22 C 1.53773 * 113.61535 * 175.85420 * 13 12 10 23 23 C 1.53778 * 87.17555 * 220.06077 * 22 13 12 24 24 C 1.53777 * 87.07957 * 25.38924 * 23 22 13 25 25 C 1.39854 * 119.85018 * 0.27571 * 9 8 7 26 26 C 1.37113 * 119.92147 * 359.42058 * 25 9 8 27 27 H 1.08998 * 109.47064 * 313.64672 * 1 2 3 28 28 H 1.09003 * 109.47326 * 73.64965 * 1 2 3 29 29 H 1.09001 * 109.46827 * 193.64908 * 1 2 3 30 30 H 0.96998 * 120.00263 * 114.88568 * 5 2 1 31 31 H 1.08000 * 119.95926 * 0.02562 * 7 6 5 32 32 H 1.08010 * 120.03390 * 179.97438 * 8 7 6 33 33 H 0.97004 * 119.99806 * 174.97554 * 17 16 14 34 34 H 1.08999 * 113.61754 * 105.46931 * 22 13 12 35 35 H 1.09000 * 113.61307 * 334.64921 * 22 13 12 36 36 H 1.08995 * 113.62148 * 139.93727 * 23 22 13 37 37 H 1.09009 * 113.61379 * 270.75877 * 23 22 13 38 38 H 1.09004 * 113.61519 * 89.11728 * 24 23 22 39 39 H 1.09001 * 113.61536 * 219.93557 * 24 23 22 40 40 H 1.07998 * 120.03771 * 179.73162 * 25 9 8 41 41 H 1.07997 * 119.95983 * 180.28157 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9119 5 7 2.2273 -0.5911 1.4907 6 6 1.9102 0.1295 2.6364 7 6 0.8580 -0.2850 3.4487 8 6 0.5430 0.4232 4.5796 9 6 1.2795 1.5634 4.9168 10 6 0.9440 2.3267 6.1321 11 8 0.0263 1.9658 6.8422 12 8 1.6544 3.4253 6.4553 13 6 1.2146 4.1764 7.6175 14 6 -0.2444 4.5488 7.5574 15 1 -0.9388 4.1282 8.2698 16 6 -0.6928 5.4265 6.5933 17 7 0.1188 5.8249 5.6382 18 14 -2.4531 6.0496 6.6435 19 1 -2.6870 6.7698 7.9210 20 1 -2.6838 6.9738 5.5043 21 1 -3.3881 4.9001 6.5450 22 6 2.1367 5.3539 7.9750 23 6 1.9260 4.9722 9.4497 24 6 1.6353 3.5448 8.9569 25 6 2.3317 1.9805 4.0953 26 6 2.6455 1.2641 2.9691 27 1 -0.3633 0.7093 0.7436 28 1 -0.3634 0.2893 -0.9861 29 1 -0.3633 -0.9987 0.2425 30 1 2.6906 -1.4401 1.5644 31 1 0.2899 -1.1657 3.1880 32 1 -0.2736 0.1014 5.2091 33 1 -0.2156 6.3839 4.9194 34 1 1.7231 6.3277 7.7127 35 1 3.1634 5.2240 7.6328 36 1 2.8295 5.0499 10.0543 37 1 1.0663 5.4607 9.9086 38 1 2.5246 2.9189 8.8828 39 1 0.8178 3.0574 9.4883 40 1 2.8997 2.8629 4.3505 41 1 3.4608 1.5831 2.3367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857957.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:17 Heat of formation + Delta-G solvation = -98.646670 kcal Electronic energy + Delta-G solvation = -27414.014711 eV Core-core repulsion = 23387.454310 eV Total energy + Delta-G solvation = -4026.560401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -39.83718 -38.84211 -37.33476 -37.01115 -36.19948 -34.91745 -34.18779 -32.31121 -31.04053 -29.72567 -29.40133 -26.19998 -24.57423 -24.01360 -22.71073 -22.40100 -20.22467 -19.73668 -18.59569 -18.10990 -17.83776 -17.24798 -16.53235 -16.24670 -15.53732 -15.32639 -14.91952 -14.78520 -14.30163 -14.28354 -13.85254 -13.71514 -13.48115 -13.42573 -13.36311 -12.91251 -12.60651 -12.34961 -12.22512 -12.04181 -11.87503 -11.65816 -11.52914 -11.24855 -11.12098 -11.02046 -10.90172 -10.41947 -10.31306 -10.11376 -9.96549 -9.82118 -9.40276 -8.97304 -8.81698 -8.66102 -8.57018 -8.52640 -6.14036 -4.24302 -0.08054 0.91770 1.48479 2.37989 3.23833 3.27255 3.30723 3.34660 3.51096 3.89712 3.96219 4.27059 4.34231 4.47558 4.71355 4.91606 4.97473 5.08349 5.16012 5.41826 5.47250 5.50121 5.62218 5.74303 5.84316 5.94789 6.04423 6.13409 6.29383 6.37627 6.45946 6.50722 6.62535 6.65034 6.70164 6.87704 7.01653 7.09031 7.29351 7.53878 7.74764 7.86794 8.33203 8.79192 9.16484 9.44267 10.90213 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.003163 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.066606 B = 8851.365916 C = 9521.827464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.670 4.670 2 S 2.609 3.391 3 O -0.944 6.944 4 O -0.960 6.960 5 N -1.063 6.063 6 C 0.128 3.872 7 C -0.133 4.133 8 C -0.062 4.062 9 C -0.092 4.092 10 C 0.504 3.496 11 O -0.499 6.499 12 O -0.344 6.344 13 C 0.240 3.760 14 C -0.511 4.511 15 H 0.068 0.932 16 C 0.075 3.925 17 N -0.862 5.862 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.106 4.106 23 C -0.131 4.131 24 C -0.160 4.160 25 C -0.055 4.055 26 C -0.114 4.114 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.423 0.577 31 H 0.131 0.869 32 H 0.141 0.859 33 H 0.264 0.736 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.147 0.853 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.249 -11.764 -7.933 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.821 4.821 2 S 2.702 3.298 3 O -0.933 6.933 4 O -0.950 6.950 5 N -0.817 5.817 6 C 0.033 3.967 7 C -0.154 4.154 8 C -0.081 4.081 9 C -0.094 4.094 10 C 0.347 3.653 11 O -0.389 6.389 12 O -0.260 6.260 13 C 0.206 3.794 14 C -0.548 4.548 15 H 0.086 0.914 16 C -0.131 4.131 17 N -0.499 5.499 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.144 4.144 23 C -0.169 4.169 24 C -0.198 4.198 25 C -0.074 4.074 26 C -0.135 4.135 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.261 0.739 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.165 0.835 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.556 -11.242 -8.550 14.565 hybrid contribution -1.591 -0.182 0.242 1.619 sum 1.965 -11.424 -8.308 14.262 Atomic orbital electron populations 1.30487 1.27760 1.11951 1.11853 1.05067 0.77807 0.74435 0.72446 1.93656 1.76898 1.37748 1.85042 1.93619 1.78257 1.61903 1.61266 1.53014 1.73233 1.34506 1.20971 1.17396 0.96232 0.94044 0.88980 1.21138 0.97683 1.01008 0.95540 1.21072 0.98359 0.92931 0.95741 1.19920 0.97679 0.96181 0.95623 1.20440 0.80662 0.80227 0.83985 1.90734 1.28464 1.68248 1.51413 1.86508 1.54157 1.35120 1.50183 1.21252 0.94106 0.86744 0.77266 1.20903 0.91690 1.25255 1.16966 0.91376 1.25056 0.97699 0.95116 0.95191 1.70012 1.34813 1.34388 1.10642 0.86639 0.84770 0.78866 0.77768 1.19841 1.21141 1.20047 1.22885 0.98035 1.00110 0.93396 1.22514 1.00201 0.97465 0.96680 1.23570 0.99912 0.96195 1.00086 1.21424 0.95179 0.98558 0.92220 1.21406 0.99754 0.95190 0.97126 0.84817 0.85212 0.85207 0.73870 0.85062 0.84153 0.92580 0.90602 0.92240 0.92980 0.90241 0.92095 0.92005 0.83536 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -4.41 10.84 101.05 1.10 -3.32 16 2 S 2.61 24.27 6.08 -107.50 -0.65 23.62 16 3 O -0.94 -12.67 16.85 -57.54 -0.97 -13.64 16 4 O -0.96 -11.20 18.08 -57.54 -1.04 -12.24 16 5 N -1.06 -9.15 5.56 32.41 0.18 -8.97 16 6 C 0.13 1.46 5.71 -83.86 -0.48 0.98 16 7 C -0.13 -1.49 9.93 -39.62 -0.39 -1.89 16 8 C -0.06 -0.92 9.56 -39.39 -0.38 -1.30 16 9 C -0.09 -1.67 5.88 -104.96 -0.62 -2.29 16 10 C 0.50 11.53 7.49 34.45 0.26 11.78 16 11 O -0.50 -12.49 14.78 -19.28 -0.29 -12.78 16 12 O -0.34 -8.35 9.17 -40.66 -0.37 -8.72 16 13 C 0.24 5.88 0.49 -90.87 -0.04 5.83 16 14 C -0.51 -13.78 6.41 -34.44 -0.22 -14.00 16 15 H 0.07 1.90 7.82 -52.48 -0.41 1.49 16 16 C 0.08 2.02 5.20 -17.82 -0.09 1.93 16 17 N -0.86 -23.68 12.59 55.43 0.70 -22.98 16 18 Si 0.89 21.00 29.55 -169.99 -5.02 15.98 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.11 -2.37 7.19 -25.92 -0.19 -2.56 16 23 C -0.13 -2.57 7.81 -25.92 -0.20 -2.77 16 24 C -0.16 -3.42 7.22 -25.83 -0.19 -3.61 16 25 C -0.05 -0.89 9.58 -39.39 -0.38 -1.27 16 26 C -0.11 -1.55 9.14 -39.62 -0.36 -1.91 16 27 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.42 2.66 8.91 -34.47 -0.31 2.36 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.14 2.05 7.64 -52.48 -0.40 1.65 16 33 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 34 H 0.08 1.82 7.64 -51.93 -0.40 1.43 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.57 8.14 -51.92 -0.42 1.14 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 40 H 0.15 2.43 7.60 -52.49 -0.40 2.03 16 41 H 0.14 1.75 7.79 -52.49 -0.41 1.35 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -34.84 365.31 -9.41 -44.24 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.26 Total: 4.35 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.19 Total: -14.37 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.88 Total: -31.95 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -2.67 Total: -47.37 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 24.27 SS G_CDS: -0.65 Total: 23.62 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.84 -9.41 -44.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857957.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.404 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds