Wall clock time and date at job start Tue Mar 31 2020 23:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42102 * 110.54248 * 2 1 4 4 O 1.42105 * 110.53991 * 223.25543 * 2 1 3 5 5 N 1.65599 * 104.44895 * 111.63117 * 2 1 3 6 6 C 1.39012 * 119.99556 * 294.87715 * 5 2 1 7 7 C 1.39246 * 119.92409 * 104.93562 * 6 5 2 8 8 C 1.37102 * 120.07201 * 179.97438 * 7 6 5 9 9 C 1.39862 * 119.93033 * 0.02562 * 8 7 6 10 10 C 1.47380 * 120.07440 * 180.02562 * 9 8 7 11 11 O 1.21521 * 119.99910 * 359.97438 * 10 9 8 12 12 O 1.34762 * 119.99929 * 180.02562 * 10 9 8 13 13 C 1.45198 * 117.00075 * 176.13442 * 12 10 9 14 14 C 1.50702 * 112.90504 * 307.10332 * 13 12 10 15 15 H 1.08007 * 119.99658 * 114.16474 * 14 13 12 16 16 C 1.37874 * 120.00246 * 294.16245 * 14 13 12 17 17 N 1.31519 * 119.99739 * 7.43344 * 16 14 13 18 18 Si 1.86800 * 120.00215 * 187.42993 * 16 14 13 19 19 H 1.48497 * 109.47088 * 59.99945 * 18 16 14 20 20 H 1.48498 * 109.47061 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46921 * 299.99962 * 18 16 14 22 22 C 1.53773 * 113.61535 * 175.85420 * 13 12 10 23 23 C 1.53778 * 87.17555 * 220.06077 * 22 13 12 24 24 C 1.53777 * 87.07957 * 25.38924 * 23 22 13 25 25 C 1.39854 * 119.85018 * 0.27571 * 9 8 7 26 26 C 1.37113 * 119.92147 * 359.42058 * 25 9 8 27 27 H 1.08998 * 109.47064 * 313.64672 * 1 2 3 28 28 H 1.09003 * 109.47326 * 73.64965 * 1 2 3 29 29 H 1.09001 * 109.46827 * 193.64908 * 1 2 3 30 30 H 0.96998 * 120.00263 * 114.88568 * 5 2 1 31 31 H 1.08000 * 119.95926 * 0.02562 * 7 6 5 32 32 H 1.08010 * 120.03390 * 179.97438 * 8 7 6 33 33 H 0.97004 * 119.99806 * 174.97554 * 17 16 14 34 34 H 1.08999 * 113.61754 * 105.46931 * 22 13 12 35 35 H 1.09000 * 113.61307 * 334.64921 * 22 13 12 36 36 H 1.08995 * 113.62148 * 139.93727 * 23 22 13 37 37 H 1.09009 * 113.61379 * 270.75877 * 23 22 13 38 38 H 1.09004 * 113.61519 * 89.11728 * 24 23 22 39 39 H 1.09001 * 113.61536 * 219.93557 * 24 23 22 40 40 H 1.07998 * 120.03771 * 179.73162 * 25 9 8 41 41 H 1.07997 * 119.95983 * 180.28157 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9119 5 7 2.2273 -0.5911 1.4907 6 6 1.9102 0.1295 2.6364 7 6 0.8580 -0.2850 3.4487 8 6 0.5430 0.4232 4.5796 9 6 1.2795 1.5634 4.9168 10 6 0.9440 2.3267 6.1321 11 8 0.0263 1.9658 6.8422 12 8 1.6544 3.4253 6.4553 13 6 1.2146 4.1764 7.6175 14 6 -0.2444 4.5488 7.5574 15 1 -0.9388 4.1282 8.2698 16 6 -0.6928 5.4265 6.5933 17 7 0.1188 5.8249 5.6382 18 14 -2.4531 6.0496 6.6435 19 1 -2.6870 6.7698 7.9210 20 1 -2.6838 6.9738 5.5043 21 1 -3.3881 4.9001 6.5450 22 6 2.1367 5.3539 7.9750 23 6 1.9260 4.9722 9.4497 24 6 1.6353 3.5448 8.9569 25 6 2.3317 1.9805 4.0953 26 6 2.6455 1.2641 2.9691 27 1 -0.3633 0.7093 0.7436 28 1 -0.3634 0.2893 -0.9861 29 1 -0.3633 -0.9987 0.2425 30 1 2.6906 -1.4401 1.5644 31 1 0.2899 -1.1657 3.1880 32 1 -0.2736 0.1014 5.2091 33 1 -0.2156 6.3839 4.9194 34 1 1.7231 6.3277 7.7127 35 1 3.1634 5.2240 7.6328 36 1 2.8295 5.0499 10.0543 37 1 1.0663 5.4607 9.9086 38 1 2.5246 2.9189 8.8828 39 1 0.8178 3.0574 9.4883 40 1 2.8997 2.8629 4.3505 41 1 3.4608 1.5831 2.3367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857957.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:15 Heat of formation + Delta-G solvation = -122.655164 kcal Electronic energy + Delta-G solvation = -27415.055797 eV Core-core repulsion = 23387.454310 eV Total energy + Delta-G solvation = -4027.601487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.29069 -40.29265 -38.73598 -38.15627 -37.07214 -36.01309 -35.93956 -34.34983 -32.16039 -30.56624 -30.28196 -28.15493 -26.33772 -25.55804 -24.12779 -23.61028 -21.66951 -20.58035 -20.45534 -19.00751 -18.93337 -18.68391 -17.92486 -17.30538 -17.04569 -16.82319 -16.38185 -16.12128 -16.10006 -15.58906 -15.49881 -14.93357 -14.51886 -14.31907 -14.15386 -14.00985 -13.92249 -13.50692 -13.47345 -13.23115 -13.12896 -13.03697 -12.94817 -12.90645 -12.74997 -12.52776 -12.17168 -12.11841 -11.98649 -11.82778 -11.61783 -11.18651 -10.98877 -10.76404 -10.51681 -10.39458 -10.08016 -9.79435 -8.17984 -6.33811 -0.86271 -0.24585 0.37743 1.37048 1.37298 1.45657 1.61821 1.81808 2.32552 2.39129 2.80006 2.84308 3.13664 3.24285 3.85383 3.87069 3.95032 4.01059 4.03523 4.11725 4.16907 4.24685 4.32866 4.36609 4.45404 4.62572 4.87081 4.89183 4.94715 4.96570 5.04150 5.16287 5.25583 5.28265 5.38129 5.43971 5.46895 5.66148 5.73991 5.79929 5.98505 6.11492 6.46242 6.69383 7.31016 7.43007 8.85324 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.003163 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.066606 B = 8851.365916 C = 9521.827464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.618 3.382 3 O -0.991 6.991 4 O -0.983 6.983 5 N -1.054 6.054 6 C 0.154 3.846 7 C -0.111 4.111 8 C -0.061 4.061 9 C -0.129 4.129 10 C 0.496 3.504 11 O -0.535 6.535 12 O -0.356 6.356 13 C 0.214 3.786 14 C -0.524 4.524 15 H 0.048 0.952 16 C 0.035 3.965 17 N -0.886 5.886 18 Si 0.945 3.055 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.281 1.281 22 C -0.106 4.106 23 C -0.111 4.111 24 C -0.154 4.154 25 C -0.062 4.062 26 C -0.120 4.120 27 H 0.133 0.867 28 H 0.148 0.852 29 H 0.161 0.839 30 H 0.438 0.562 31 H 0.180 0.820 32 H 0.140 0.860 33 H 0.264 0.736 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.130 0.870 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.680 -13.643 -9.051 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.716 3.284 3 O -0.981 6.981 4 O -0.974 6.974 5 N -0.810 5.810 6 C 0.058 3.942 7 C -0.131 4.131 8 C -0.080 4.080 9 C -0.130 4.130 10 C 0.341 3.659 11 O -0.427 6.427 12 O -0.272 6.272 13 C 0.180 3.820 14 C -0.561 4.561 15 H 0.066 0.934 16 C -0.168 4.168 17 N -0.523 5.523 18 Si 0.770 3.230 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.206 1.206 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.192 4.192 25 C -0.081 4.081 26 C -0.141 4.141 27 H 0.152 0.848 28 H 0.167 0.833 29 H 0.179 0.821 30 H 0.279 0.721 31 H 0.198 0.802 32 H 0.158 0.842 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.148 0.852 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.046 -13.132 -9.668 16.590 hybrid contribution -1.415 0.271 0.470 1.516 sum 1.631 -12.861 -9.198 15.896 Atomic orbital electron populations 1.30364 1.23245 1.14064 1.13267 1.04591 0.79148 0.72855 0.71840 1.93607 1.79032 1.39952 1.85528 1.93591 1.79798 1.62186 1.61817 1.52832 1.73751 1.34736 1.19644 1.17379 0.94984 0.92778 0.89014 1.21491 0.96978 1.01336 0.93318 1.21185 0.97878 0.92039 0.96931 1.19767 1.00349 0.97976 0.94937 1.21279 0.79849 0.79719 0.85038 1.90688 1.29920 1.69124 1.52942 1.86481 1.54541 1.35920 1.50242 1.21492 0.93561 0.88368 0.78609 1.20992 0.92923 1.25463 1.16743 0.93379 1.25663 1.01001 0.95252 0.94905 1.70103 1.36113 1.35006 1.11057 0.85826 0.80690 0.78207 0.78292 1.18870 1.20291 1.20645 1.22863 0.98003 0.98079 0.95437 1.22434 1.01714 0.95305 0.95379 1.23510 0.99941 0.97390 0.98331 1.21264 0.94966 0.98658 0.93177 1.21508 1.00386 0.95907 0.96260 0.84801 0.83334 0.82096 0.72125 0.80229 0.84202 0.92675 0.93013 0.91046 0.89087 0.90662 0.90661 0.93227 0.85213 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.80 10.84 113.37 1.23 -4.57 16 2 S 2.62 42.12 6.08 -56.49 -0.34 41.77 16 3 O -0.99 -25.56 16.85 -127.65 -2.15 -27.71 16 4 O -0.98 -20.68 18.08 -127.65 -2.31 -22.99 16 5 N -1.05 -14.70 5.56 -51.37 -0.29 -14.98 16 6 C 0.15 3.08 5.71 38.49 0.22 3.30 16 7 C -0.11 -2.10 9.93 22.25 0.22 -1.87 16 8 C -0.06 -1.74 9.56 22.40 0.21 -1.53 16 9 C -0.13 -4.75 5.88 -20.09 -0.12 -4.87 16 10 C 0.50 23.64 7.49 70.23 0.53 24.16 16 11 O -0.53 -27.95 14.78 19.77 0.29 -27.65 16 12 O -0.36 -18.03 9.17 -56.73 -0.52 -18.55 16 13 C 0.21 10.78 0.49 -10.96 -0.01 10.77 16 14 C -0.52 -29.24 6.41 25.60 0.16 -29.08 16 15 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 16 C 0.04 1.93 5.20 84.65 0.44 2.37 16 17 N -0.89 -50.06 12.59 21.45 0.27 -49.79 16 18 Si 0.94 43.84 29.55 68.60 2.03 45.87 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 C -0.11 -4.79 7.19 31.12 0.22 -4.57 16 23 C -0.11 -4.26 7.81 31.12 0.24 -4.02 16 24 C -0.15 -6.66 7.22 31.18 0.23 -6.43 16 25 C -0.06 -2.04 9.58 22.40 0.21 -1.83 16 26 C -0.12 -3.16 9.14 22.25 0.20 -2.95 16 27 H 0.13 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.16 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.44 3.91 8.91 -96.75 -0.86 3.05 16 31 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.14 3.97 7.64 -2.91 -0.02 3.95 16 33 H 0.26 14.29 8.32 -92.71 -0.77 13.51 16 34 H 0.05 2.55 7.64 -2.39 -0.02 2.53 16 35 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 38 H 0.07 2.98 8.14 -2.39 -0.02 2.97 16 39 H 0.05 2.22 8.10 -2.39 -0.02 2.20 16 40 H 0.13 4.62 7.60 -2.91 -0.02 4.59 16 41 H 0.14 3.61 7.79 -2.91 -0.02 3.58 16 Total: -1.00 -79.32 365.31 1.18 -78.14 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.20 Total: 16.99 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 4.00 Total: -21.11 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.02 Total: -64.77 kcal Atomic # 8 Polarization: -92.21 SS G_CDS: -4.69 Total: -96.90 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 42.12 SS G_CDS: -0.34 Total: 41.77 kcal Total: -79.32 1.18 -78.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857957.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.518 kcal (2) G-P(sol) polarization free energy of solvation -79.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds