Wall clock time and date at job start Tue Mar 31 2020 22:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99729 * 2 1 4 4 C 1.52995 * 109.47105 * 175.09317 * 3 2 1 5 5 S 1.81399 * 115.55023 * 38.80819 * 4 3 2 6 6 O 1.42105 * 110.54284 * 167.22237 * 5 4 3 7 7 O 1.42100 * 110.54315 * 303.96980 * 5 4 3 8 8 N 1.65606 * 104.45074 * 55.59761 * 5 4 3 9 9 C 1.34768 * 119.99927 * 63.83444 * 8 5 4 10 10 O 1.21546 * 120.00343 * 5.44439 * 9 8 5 11 11 C 1.47890 * 120.00182 * 185.44401 * 9 8 5 12 12 C 1.39923 * 120.02218 * 5.19433 * 11 9 8 13 13 C 1.38320 * 120.35774 * 179.71772 * 12 11 9 14 14 C 1.37756 * 120.41347 * 0.56216 * 13 12 11 15 15 C 1.40755 * 120.03451 * 359.71825 * 14 13 12 16 16 C 1.41441 * 120.17372 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00241 * 325.66387 * 16 15 14 18 18 C 1.39943 * 119.99656 * 145.65178 * 16 15 14 19 19 N 1.30830 * 120.00069 * 356.60727 * 18 16 15 20 20 Si 1.86800 * 119.99772 * 176.59644 * 18 16 15 21 21 H 1.48492 * 109.47188 * 60.00660 * 20 18 16 22 22 H 1.48506 * 109.46813 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47124 * 300.00527 * 20 18 16 24 24 C 1.38994 * 120.02488 * 185.47183 * 11 9 8 25 25 C 1.53002 * 117.50178 * 253.09687 * 4 3 2 26 26 C 1.53004 * 60.00142 * 252.51434 * 25 4 3 27 27 H 1.09002 * 109.46945 * 64.91068 * 1 2 3 28 28 H 1.09007 * 109.46535 * 184.90573 * 1 2 3 29 29 H 1.09000 * 109.47347 * 304.90610 * 1 2 3 30 30 H 1.08999 * 109.46703 * 295.09535 * 3 2 1 31 31 H 1.08998 * 109.46965 * 55.09066 * 3 2 1 32 32 H 0.96997 * 119.99949 * 243.83617 * 8 5 4 33 33 H 1.08005 * 119.81691 * 359.97438 * 12 11 9 34 34 H 1.07996 * 119.79519 * 180.25936 * 13 12 11 35 35 H 1.07995 * 119.98407 * 179.74261 * 14 13 12 36 36 H 0.96999 * 120.00116 * 179.97438 * 19 18 16 37 37 H 1.07996 * 120.20585 * 359.97438 * 24 11 9 38 38 H 1.09003 * 117.49425 * 0.02562 * 25 4 3 39 39 H 1.08998 * 117.49774 * 145.02578 * 25 4 3 40 40 H 1.09003 * 117.49477 * 252.51592 * 26 25 4 41 41 H 1.08995 * 117.50124 * 107.49010 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5305 1.1870 0.1234 5 16 4.2861 -0.1801 -0.7991 6 8 5.6974 -0.0240 -0.8549 7 8 3.7003 -1.4190 -0.4234 8 7 3.7876 0.0503 -2.3614 9 6 4.1690 1.1537 -3.0347 10 8 4.9576 1.9301 -2.5321 11 6 3.6282 1.4198 -4.3852 12 6 2.6398 0.5864 -4.9203 13 6 2.1249 0.8324 -6.1803 14 6 2.5871 1.8933 -6.9276 15 6 3.5853 2.7390 -6.4083 16 6 4.0616 3.8295 -7.1729 17 1 4.1329 3.7455 -8.2472 18 6 4.4401 5.0173 -6.5372 19 7 4.2913 5.1431 -5.2435 20 14 5.1583 6.4232 -7.5358 21 1 4.1713 6.8608 -8.5553 22 1 5.4757 7.5594 -6.6338 23 1 6.3991 5.9668 -8.2119 24 6 4.1056 2.4946 -5.1262 25 6 4.1627 1.5705 1.4628 26 6 4.3325 2.4841 0.2473 27 1 -0.3633 0.4358 -0.9307 28 1 -0.3633 -1.0240 0.0879 29 1 -0.3634 0.5881 0.8428 30 1 1.7597 1.8147 -0.9307 31 1 1.6206 1.8766 0.8427 32 1 3.2210 -0.6089 -2.7919 33 1 2.2740 -0.2510 -4.3446 34 1 1.3593 0.1857 -6.5827 35 1 2.1832 2.0764 -7.9123 36 1 4.5540 5.9663 -4.8028 37 1 4.8713 3.1380 -4.7188 38 1 3.4953 1.9070 2.2563 39 1 5.0328 1.0013 1.7900 40 1 5.3143 2.5157 -0.2252 41 1 3.7770 3.4218 0.2409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811153067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:51 Heat of formation + Delta-G solvation = -102.087726 kcal Electronic energy + Delta-G solvation = -28017.270502 eV Core-core repulsion = 23990.560886 eV Total energy + Delta-G solvation = -4026.709616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.62410 -38.65373 -37.37915 -37.03061 -36.45002 -35.84653 -34.15962 -33.55174 -30.20661 -29.59120 -28.50618 -25.75141 -25.43249 -23.55236 -22.68711 -22.28636 -21.11599 -20.25538 -19.08614 -18.10232 -17.67130 -17.14237 -16.40277 -16.18605 -15.81682 -15.57748 -15.36313 -14.91103 -14.66555 -14.37896 -14.23826 -14.13454 -13.39237 -13.14496 -12.97350 -12.84171 -12.67061 -12.26504 -11.98951 -11.88002 -11.80369 -11.72072 -11.67604 -11.23261 -11.19831 -11.16226 -10.87975 -10.85308 -10.65640 -10.57658 -10.25576 -10.10077 -9.82413 -9.80118 -9.44873 -9.30081 -7.82445 -7.54702 -6.78343 -4.53728 0.29978 1.85690 2.55724 2.71503 3.04664 3.05888 3.06806 3.08202 3.41489 3.53823 3.88859 3.91534 4.08654 4.46816 4.56813 4.69544 4.80047 5.06920 5.09978 5.19267 5.22957 5.33136 5.36844 5.39493 5.42653 5.48662 5.56492 5.76183 5.93255 5.98633 6.12481 6.53700 6.76256 6.87859 6.88144 7.08591 7.15409 7.23401 7.54225 7.64045 7.84580 8.03832 8.22214 8.38926 8.70750 8.75625 10.16456 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014602 B = 0.003770 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.076328 B = 7425.549803 C = 8020.552867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.115 3.885 4 C -0.648 4.648 5 S 2.640 3.360 6 O -0.935 6.935 7 O -0.935 6.935 8 N -1.049 6.049 9 C 0.584 3.416 10 O -0.498 6.498 11 C -0.139 4.139 12 C -0.202 4.202 13 C -0.103 4.103 14 C -0.194 4.194 15 C 0.097 3.903 16 C -0.465 4.465 17 H 0.080 0.920 18 C 0.071 3.929 19 N -0.802 5.802 20 Si 0.916 3.084 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.072 4.072 25 C -0.124 4.124 26 C -0.095 4.095 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.431 0.569 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.283 0.717 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.131 0.869 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 -4.487 10.506 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.305 6.305 3 C 0.037 3.963 4 C -0.737 4.737 5 S 2.731 3.269 6 O -0.925 6.925 7 O -0.925 6.925 8 N -0.815 5.815 9 C 0.375 3.625 10 O -0.372 6.372 11 C -0.145 4.145 12 C -0.222 4.222 13 C -0.122 4.122 14 C -0.214 4.214 15 C 0.094 3.906 16 C -0.495 4.495 17 H 0.098 0.902 18 C -0.146 4.146 19 N -0.428 5.428 20 Si 0.741 3.259 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.092 4.092 25 C -0.162 4.162 26 C -0.132 4.132 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.269 0.731 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.157 0.843 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.150 0.850 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.376 -4.572 11.374 13.017 hybrid contribution -0.947 1.030 -0.602 1.523 sum -5.322 -3.542 10.772 12.526 Atomic orbital electron populations 1.22777 0.80095 1.03140 1.00303 1.87956 1.20519 1.26520 1.95501 1.21618 0.86968 0.85706 1.01992 1.31792 1.05028 1.20504 1.16369 1.04272 0.74341 0.74707 0.73541 1.93632 1.27621 1.86504 1.84787 1.93605 1.79173 1.38137 1.81601 1.54896 1.62435 1.31263 1.32880 1.18796 0.78527 0.78221 0.86926 1.90824 1.31637 1.45586 1.69172 1.19394 1.01893 1.00424 0.92754 1.20456 1.02929 1.01371 0.97478 1.20482 0.99487 0.97698 0.94502 1.21300 1.00038 0.99533 1.00528 1.17627 0.89480 0.91635 0.91827 1.19514 1.38400 0.96509 0.95041 0.90182 1.25904 0.93331 1.00234 0.95124 1.69702 1.36037 1.27513 1.09564 0.86231 0.80131 0.79561 0.79995 1.19060 1.20282 1.18847 1.21792 0.98923 0.93643 0.94840 1.22986 1.01556 1.02404 0.89289 1.23035 1.00979 0.90955 0.98280 0.93515 0.89148 0.93976 0.91323 0.91770 0.73141 0.88721 0.88492 0.88254 0.90548 0.84325 0.86869 0.87391 0.85047 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.11 9.08 -51.81 -0.47 -5.58 16 3 C 0.11 1.42 6.03 37.16 0.22 1.65 16 4 C -0.65 -8.87 2.29 -90.62 -0.21 -9.08 16 5 S 2.64 43.92 4.84 -107.50 -0.52 43.40 16 6 O -0.94 -18.28 16.56 -65.00 -1.08 -19.36 16 7 O -0.93 -16.58 16.90 -64.62 -1.09 -17.67 16 8 N -1.05 -17.69 5.52 30.54 0.17 -17.52 16 9 C 0.58 11.82 7.49 -12.31 -0.09 11.73 16 10 O -0.50 -11.00 13.20 -12.48 -0.16 -11.17 16 11 C -0.14 -3.05 5.87 -105.03 -0.62 -3.67 16 12 C -0.20 -3.96 9.52 -38.92 -0.37 -4.33 16 13 C -0.10 -2.05 10.01 -39.73 -0.40 -2.45 16 14 C -0.19 -4.31 9.78 -38.81 -0.38 -4.69 16 15 C 0.10 2.41 5.51 -106.87 -0.59 1.82 16 16 C -0.46 -11.67 9.04 -37.72 -0.34 -12.01 16 17 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 18 C 0.07 1.72 5.34 -17.34 -0.09 1.63 16 19 N -0.80 -20.22 10.87 55.55 0.60 -19.62 16 20 Si 0.92 18.24 29.56 -169.99 -5.03 13.22 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 24 C -0.07 -1.79 8.17 -38.44 -0.31 -2.10 16 25 C -0.12 -1.33 9.94 -26.73 -0.27 -1.60 16 26 C -0.09 -1.23 8.78 -26.73 -0.23 -1.46 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 29 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.65 7.91 -51.93 -0.41 0.23 16 32 H 0.43 6.22 6.88 -34.47 -0.24 5.98 16 33 H 0.09 1.52 6.46 -52.48 -0.34 1.18 16 34 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 36 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 37 H 0.14 3.73 5.98 -52.49 -0.31 3.41 16 38 H 0.11 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.13 1.97 6.98 -51.93 -0.36 1.61 16 41 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -31.22 360.02 -9.73 -40.95 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.01 Total: 11.06 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -2.56 Total: -23.13 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.77 Total: -37.14 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -2.80 Total: -53.78 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 16 Polarization: 43.92 SS G_CDS: -0.52 Total: 43.40 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.22 -9.73 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811153067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.142 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds