Wall clock time and date at job start Tue Mar 31 2020 22:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99729 * 2 1 4 4 C 1.52995 * 109.47105 * 175.09317 * 3 2 1 5 5 S 1.81399 * 115.55023 * 38.80819 * 4 3 2 6 6 O 1.42105 * 110.54284 * 167.22237 * 5 4 3 7 7 O 1.42100 * 110.54315 * 303.96980 * 5 4 3 8 8 N 1.65606 * 104.45074 * 55.59761 * 5 4 3 9 9 C 1.34768 * 119.99927 * 63.83444 * 8 5 4 10 10 O 1.21546 * 120.00343 * 5.44439 * 9 8 5 11 11 C 1.47890 * 120.00182 * 185.44401 * 9 8 5 12 12 C 1.39923 * 120.02218 * 5.19433 * 11 9 8 13 13 C 1.38320 * 120.35774 * 179.71772 * 12 11 9 14 14 C 1.37756 * 120.41347 * 0.56216 * 13 12 11 15 15 C 1.40755 * 120.03451 * 359.71825 * 14 13 12 16 16 C 1.41441 * 120.17372 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00241 * 325.66387 * 16 15 14 18 18 C 1.39943 * 119.99656 * 145.65178 * 16 15 14 19 19 N 1.30830 * 120.00069 * 356.60727 * 18 16 15 20 20 Si 1.86800 * 119.99772 * 176.59644 * 18 16 15 21 21 H 1.48492 * 109.47188 * 60.00660 * 20 18 16 22 22 H 1.48506 * 109.46813 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47124 * 300.00527 * 20 18 16 24 24 C 1.38994 * 120.02488 * 185.47183 * 11 9 8 25 25 C 1.53002 * 117.50178 * 253.09687 * 4 3 2 26 26 C 1.53004 * 60.00142 * 252.51434 * 25 4 3 27 27 H 1.09002 * 109.46945 * 64.91068 * 1 2 3 28 28 H 1.09007 * 109.46535 * 184.90573 * 1 2 3 29 29 H 1.09000 * 109.47347 * 304.90610 * 1 2 3 30 30 H 1.08999 * 109.46703 * 295.09535 * 3 2 1 31 31 H 1.08998 * 109.46965 * 55.09066 * 3 2 1 32 32 H 0.96997 * 119.99949 * 243.83617 * 8 5 4 33 33 H 1.08005 * 119.81691 * 359.97438 * 12 11 9 34 34 H 1.07996 * 119.79519 * 180.25936 * 13 12 11 35 35 H 1.07995 * 119.98407 * 179.74261 * 14 13 12 36 36 H 0.96999 * 120.00116 * 179.97438 * 19 18 16 37 37 H 1.07996 * 120.20585 * 359.97438 * 24 11 9 38 38 H 1.09003 * 117.49425 * 0.02562 * 25 4 3 39 39 H 1.08998 * 117.49774 * 145.02578 * 25 4 3 40 40 H 1.09003 * 117.49477 * 252.51592 * 26 25 4 41 41 H 1.08995 * 117.50124 * 107.49010 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5305 1.1870 0.1234 5 16 4.2861 -0.1801 -0.7991 6 8 5.6974 -0.0240 -0.8549 7 8 3.7003 -1.4190 -0.4234 8 7 3.7876 0.0503 -2.3614 9 6 4.1690 1.1537 -3.0347 10 8 4.9576 1.9301 -2.5321 11 6 3.6282 1.4198 -4.3852 12 6 2.6398 0.5864 -4.9203 13 6 2.1249 0.8324 -6.1803 14 6 2.5871 1.8933 -6.9276 15 6 3.5853 2.7390 -6.4083 16 6 4.0616 3.8295 -7.1729 17 1 4.1329 3.7455 -8.2472 18 6 4.4401 5.0173 -6.5372 19 7 4.2913 5.1431 -5.2435 20 14 5.1583 6.4232 -7.5358 21 1 4.1713 6.8608 -8.5553 22 1 5.4757 7.5594 -6.6338 23 1 6.3991 5.9668 -8.2119 24 6 4.1056 2.4946 -5.1262 25 6 4.1627 1.5705 1.4628 26 6 4.3325 2.4841 0.2473 27 1 -0.3633 0.4358 -0.9307 28 1 -0.3633 -1.0240 0.0879 29 1 -0.3634 0.5881 0.8428 30 1 1.7597 1.8147 -0.9307 31 1 1.6206 1.8766 0.8427 32 1 3.2210 -0.6089 -2.7919 33 1 2.2740 -0.2510 -4.3446 34 1 1.3593 0.1857 -6.5827 35 1 2.1832 2.0764 -7.9123 36 1 4.5540 5.9663 -4.8028 37 1 4.8713 3.1380 -4.7188 38 1 3.4953 1.9070 2.2563 39 1 5.0328 1.0013 1.7900 40 1 5.3143 2.5157 -0.2252 41 1 3.7770 3.4218 0.2409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811153067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:49 Heat of formation + Delta-G solvation = -122.881827 kcal Electronic energy + Delta-G solvation = -28018.172202 eV Core-core repulsion = 23990.560886 eV Total energy + Delta-G solvation = -4027.611316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24095 -39.60904 -38.98906 -38.40462 -37.51568 -37.25060 -35.79063 -35.22880 -31.94206 -31.32587 -29.36644 -27.23651 -26.56249 -25.17497 -23.63808 -23.41743 -22.84058 -21.87280 -20.47969 -19.75891 -18.94246 -18.41099 -17.92503 -17.20998 -17.02630 -16.94536 -16.59172 -16.48537 -16.02130 -15.92671 -15.79598 -15.12948 -15.09145 -14.65407 -14.32740 -14.12655 -13.73590 -13.68940 -13.56643 -13.41315 -13.24877 -12.90165 -12.81534 -12.64800 -12.55311 -12.51556 -12.23801 -12.15479 -12.04633 -12.00221 -11.80173 -11.53115 -11.30737 -11.15300 -11.02791 -10.67620 -9.55820 -9.31614 -8.55902 -6.41165 -0.99420 0.15531 1.00088 1.22930 1.40247 1.47397 1.51353 1.77364 2.03395 2.23282 2.60494 2.65641 2.80790 2.96127 3.38284 3.55291 3.62432 3.68756 3.77911 4.01077 4.25444 4.34338 4.38831 4.46672 4.52619 4.54334 4.55187 4.60457 4.82032 4.85253 4.89994 4.98527 5.06490 5.13232 5.32651 5.48727 5.62656 5.82851 5.90972 6.05867 6.07358 6.27495 6.56967 6.60673 6.91808 6.92846 8.40300 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014602 B = 0.003770 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.076328 B = 7425.549803 C = 8020.552867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.115 3.885 4 C -0.652 4.652 5 S 2.637 3.363 6 O -0.973 6.973 7 O -0.947 6.947 8 N -1.037 6.037 9 C 0.589 3.411 10 O -0.522 6.522 11 C -0.148 4.148 12 C -0.183 4.183 13 C -0.101 4.101 14 C -0.197 4.197 15 C 0.065 3.935 16 C -0.502 4.502 17 H 0.081 0.919 18 C 0.029 3.971 19 N -0.839 5.839 20 Si 0.983 3.017 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.263 1.263 24 C -0.105 4.105 25 C -0.098 4.098 26 C -0.107 4.107 27 H 0.049 0.951 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.441 0.559 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.112 0.888 36 H 0.285 0.715 37 H 0.107 0.893 38 H 0.151 0.849 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.766 -5.217 11.495 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.037 3.963 4 C -0.745 4.745 5 S 2.734 3.266 6 O -0.964 6.964 7 O -0.937 6.937 8 N -0.803 5.803 9 C 0.380 3.620 10 O -0.397 6.397 11 C -0.153 4.153 12 C -0.203 4.203 13 C -0.119 4.119 14 C -0.216 4.216 15 C 0.063 3.937 16 C -0.532 4.532 17 H 0.099 0.901 18 C -0.184 4.184 19 N -0.466 5.466 20 Si 0.804 3.196 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.187 1.187 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.145 4.145 27 H 0.068 0.932 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.281 0.719 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.130 0.870 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.169 0.831 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.511 -5.379 12.327 14.943 hybrid contribution -0.402 1.081 -0.815 1.412 sum -6.913 -4.298 11.513 14.100 Atomic orbital electron populations 1.23004 0.78412 1.04320 1.01384 1.87924 1.22431 1.26869 1.95692 1.21691 0.85738 0.85912 1.02910 1.31578 1.05985 1.18855 1.18076 1.04120 0.73665 0.75413 0.73400 1.93590 1.30235 1.87331 1.85204 1.93584 1.79067 1.39652 1.81446 1.54681 1.62032 1.30311 1.33250 1.18583 0.78200 0.78703 0.86528 1.90820 1.32604 1.46723 1.69560 1.19619 1.02369 1.00000 0.93324 1.20973 1.00646 1.01124 0.97557 1.20949 0.99702 0.97140 0.94084 1.21592 0.99202 0.99547 1.01287 1.17942 0.90794 0.92642 0.92300 1.19780 1.40558 0.97614 0.95279 0.90080 1.26718 0.93268 1.02403 0.96000 1.69811 1.37551 1.28188 1.11044 0.85226 0.79337 0.76449 0.78554 1.18097 1.19764 1.18708 1.21574 0.99877 0.95176 0.95975 1.23330 1.01737 0.99875 0.88694 1.23030 0.99856 0.91587 0.99979 0.93191 0.88176 0.92003 0.92244 0.88666 0.71915 0.84461 0.84081 0.86995 0.90470 0.87501 0.83123 0.86675 0.87786 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -9.78 9.08 -133.13 -1.21 -10.99 16 3 C 0.11 2.56 6.03 71.98 0.43 3.00 16 4 C -0.65 -16.81 2.29 -10.79 -0.02 -16.84 16 5 S 2.64 86.68 4.84 -56.49 -0.27 86.40 16 6 O -0.97 -38.88 16.56 -120.52 -2.00 -40.88 16 7 O -0.95 -32.66 16.90 -120.88 -2.04 -34.70 16 8 N -1.04 -34.35 5.52 -175.58 -0.97 -35.32 16 9 C 0.59 24.14 7.49 86.80 0.65 24.79 16 10 O -0.52 -24.02 13.20 13.17 0.17 -23.84 16 11 C -0.15 -6.52 5.87 -20.13 -0.12 -6.63 16 12 C -0.18 -6.73 9.52 22.70 0.22 -6.51 16 13 C -0.10 -3.70 10.01 22.17 0.22 -3.48 16 14 C -0.20 -8.59 9.78 22.77 0.22 -8.37 16 15 C 0.07 3.36 5.51 -21.32 -0.12 3.24 16 16 C -0.50 -26.22 9.04 23.47 0.21 -26.01 16 17 H 0.08 4.01 7.85 -2.91 -0.02 3.99 16 18 C 0.03 1.46 5.34 85.26 0.46 1.91 16 19 N -0.84 -44.47 10.87 21.83 0.24 -44.23 16 20 Si 0.98 38.45 29.56 68.60 2.03 40.48 16 21 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 24 C -0.11 -5.48 8.17 23.01 0.19 -5.29 16 25 C -0.10 -1.85 9.94 30.60 0.30 -1.54 16 26 C -0.11 -2.67 8.78 30.60 0.27 -2.40 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 28 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.06 0.76 8.12 -2.39 -0.02 0.74 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.10 1.53 7.91 -2.39 -0.02 1.51 16 32 H 0.44 11.97 6.88 -96.75 -0.67 11.31 16 33 H 0.14 3.82 6.46 -2.91 -0.02 3.80 16 34 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 35 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 37 H 0.11 6.18 5.98 -2.91 -0.02 6.16 16 38 H 0.15 1.76 8.08 -2.39 -0.02 1.74 16 39 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.10 3.24 6.98 -2.39 -0.02 3.22 16 41 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -71.52 360.02 0.52 -71.00 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.41 Total: 34.57 kcal Atomic # 6 Polarization: -46.65 SS G_CDS: 4.16 Total: -42.49 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -0.73 Total: -79.55 kcal Atomic # 8 Polarization: -105.34 SS G_CDS: -5.07 Total: -110.41 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Atomic # 16 Polarization: 86.68 SS G_CDS: -0.27 Total: 86.40 kcal Total: -71.52 0.52 -71.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811153067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.877 kcal (2) G-P(sol) polarization free energy of solvation -71.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds