Wall clock time and date at job start Tue Mar 31 2020 22:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00188 * 2 1 4 4 C 1.38746 * 120.09207 * 0.23465 * 3 2 1 5 5 C 1.38003 * 119.87975 * 180.27878 * 4 3 2 6 6 C 1.38544 * 120.28935 * 359.76247 * 5 4 3 7 7 C 1.38265 * 119.93455 * 359.97438 * 6 5 4 8 8 C 1.38412 * 119.90705 * 359.97438 * 7 6 5 9 9 C 1.51378 * 109.75295 * 180.02562 * 7 6 5 10 10 H 1.09001 * 110.30335 * 136.12231 * 9 7 6 11 11 C 1.50702 * 110.30275 * 258.27274 * 9 7 6 12 12 O 1.21291 * 120.00091 * 118.54683 * 11 9 7 13 13 N 1.34773 * 120.00203 * 298.54561 * 11 9 7 14 14 S 1.65596 * 120.00262 * 179.97438 * 13 11 9 15 15 O 1.42100 * 104.27982 * 181.07294 * 14 13 11 16 16 O 1.42104 * 104.27840 * 308.93042 * 14 13 11 17 17 C 1.81405 * 104.44926 * 65.00283 * 14 13 11 18 18 C 1.50700 * 109.47123 * 179.97438 * 17 14 13 19 19 H 1.08004 * 119.99989 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99823 * 179.97438 * 18 17 14 21 21 N 1.31516 * 119.99550 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00104 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47171 * 89.99455 * 22 20 18 24 24 H 1.48499 * 109.46896 * 209.99683 * 22 20 18 25 25 H 1.48503 * 109.46889 * 329.99680 * 22 20 18 26 26 C 1.54344 * 105.17378 * 17.19490 * 9 7 6 27 27 C 1.51388 * 130.32200 * 179.97438 * 6 5 4 28 28 H 1.09004 * 109.47228 * 59.99907 * 1 2 3 29 29 H 1.08996 * 109.47535 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47271 * 300.00158 * 1 2 3 31 31 H 1.08009 * 120.06295 * 0.03808 * 4 3 2 32 32 H 1.08000 * 119.85368 * 179.74767 * 5 4 3 33 33 H 1.08002 * 119.91037 * 179.97438 * 8 7 6 34 34 H 0.96998 * 119.99788 * 0.02562 * 13 11 9 35 35 H 1.08998 * 109.46971 * 299.99822 * 17 14 13 36 36 H 1.08995 * 109.46687 * 60.00177 * 17 14 13 37 37 H 0.97010 * 119.99250 * 180.02562 * 21 20 18 38 38 H 1.09004 * 110.81938 * 91.85600 * 26 9 7 39 39 H 1.08993 * 110.82398 * 215.20611 * 26 9 7 40 40 H 1.08998 * 110.30141 * 43.88062 * 27 6 5 41 41 H 1.08994 * 110.38714 * 281.76858 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2922 2.3757 0.0049 5 6 1.9233 3.6030 -0.0009 6 6 3.3068 3.6773 -0.0067 7 6 4.0600 2.5179 -0.0061 8 6 3.4299 1.2856 0.0008 9 6 5.5334 2.8651 -0.0125 10 1 6.0732 2.2366 0.6959 11 6 6.1032 2.7014 -1.3980 12 8 6.5754 3.6572 -1.9764 13 7 6.0882 1.4929 -1.9944 14 16 6.7138 1.3131 -3.5171 15 8 6.5050 -0.0590 -3.8221 16 8 6.0855 2.3363 -4.2772 17 6 8.4838 1.6599 -3.3232 18 6 9.1710 1.5261 -4.6577 19 1 8.6001 1.2595 -5.5348 20 6 10.5285 1.7450 -4.7589 21 7 11.1282 1.6287 -5.9237 22 14 11.5159 2.2067 -3.2420 23 1 12.0153 0.9737 -2.5821 24 1 12.6671 3.0560 -3.6403 25 1 10.6502 2.9577 -2.2976 26 6 5.6019 4.3441 0.4234 27 6 4.2230 4.8825 -0.0142 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2135 2.3222 0.0094 32 1 1.3362 4.5095 -0.0012 33 1 4.0182 0.3799 0.0008 34 1 5.7103 0.7285 -1.5320 35 1 8.6161 2.6740 -2.9460 36 1 8.9178 0.9506 -2.6186 37 1 12.0834 1.7823 -5.9948 38 1 5.7246 4.4244 1.5035 39 1 6.4067 4.8642 -0.0960 40 1 3.8682 5.6317 0.6935 41 1 4.2829 5.3077 -1.0160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835408283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:42 Heat of formation + Delta-G solvation = -122.867285 kcal Electronic energy + Delta-G solvation = -27534.326485 eV Core-core repulsion = 23506.715800 eV Total energy + Delta-G solvation = -4027.610686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19602 -39.87664 -38.34330 -36.34799 -35.27984 -34.93082 -34.31687 -33.25487 -31.75189 -29.82001 -28.92337 -28.67429 -26.87700 -23.37848 -23.08463 -22.79038 -21.09405 -20.47996 -19.19714 -18.37766 -17.67601 -17.37055 -16.72576 -16.49559 -16.04221 -15.92196 -15.71722 -15.30641 -15.05035 -14.62463 -14.37197 -14.16276 -13.84334 -13.71981 -13.40815 -12.95580 -12.72319 -12.54059 -12.38924 -12.16449 -12.06883 -11.87106 -11.66699 -11.50638 -11.40821 -11.37441 -11.29143 -10.98248 -10.92060 -10.85806 -10.65827 -10.35861 -10.16476 -9.87982 -9.41230 -9.08285 -8.82995 -8.26868 -6.31526 -4.40938 0.83355 0.99214 1.16507 2.21319 2.93595 3.06083 3.15810 3.24345 3.26000 3.43521 4.15260 4.20718 4.22878 4.28031 4.49413 4.54715 4.67228 4.78341 4.82740 4.85889 4.89893 4.95762 5.08154 5.12254 5.13786 5.18212 5.21451 5.38498 5.46775 5.66282 5.74852 5.86892 5.97192 6.03040 6.11606 6.17049 6.30645 6.36542 6.41923 6.83890 7.10230 7.16779 7.60434 7.99783 8.58701 9.22998 10.79414 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.003471 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.002036 B = 8065.421286 C = 8992.836539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.126 3.874 4 C -0.199 4.199 5 C -0.068 4.068 6 C -0.117 4.117 7 C -0.060 4.060 8 C -0.134 4.134 9 C -0.072 4.072 10 H 0.120 0.880 11 C 0.545 3.455 12 O -0.481 6.481 13 N -1.059 6.059 14 S 2.576 3.424 15 O -0.959 6.959 16 O -0.943 6.943 17 C -0.459 4.459 18 C -0.533 4.533 19 H 0.087 0.913 20 C 0.090 3.910 21 N -0.879 5.879 22 Si 0.882 3.118 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.261 1.261 26 C -0.109 4.109 27 C -0.081 4.081 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.425 0.575 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.272 0.728 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.661 1.890 19.569 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.081 3.919 4 C -0.218 4.218 5 C -0.086 4.086 6 C -0.117 4.117 7 C -0.061 4.061 8 C -0.153 4.153 9 C -0.095 4.095 10 H 0.138 0.862 11 C 0.331 3.669 12 O -0.352 6.352 13 N -0.819 5.819 14 S 2.676 3.324 15 O -0.950 6.950 16 O -0.933 6.933 17 C -0.594 4.594 18 C -0.572 4.572 19 H 0.105 0.895 20 C -0.117 4.117 21 N -0.514 5.514 22 Si 0.708 3.292 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.185 1.185 26 C -0.146 4.146 27 C -0.118 4.118 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.260 0.740 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.612 2.200 18.272 26.175 hybrid contribution 0.496 -0.140 1.262 1.363 sum -18.116 2.060 19.534 26.721 Atomic orbital electron populations 1.23067 0.78258 1.04068 1.01342 1.86076 1.21439 1.26611 1.88746 1.18727 0.91909 0.84329 0.96949 1.21158 1.00043 0.92087 1.08526 1.20392 0.93010 0.97242 0.97993 1.20579 0.93503 0.95753 1.01907 1.19873 0.93771 0.92913 0.99530 1.19789 0.91587 0.97483 1.06396 1.20943 0.93021 1.00917 0.94622 0.86197 1.20195 0.76939 0.81729 0.88086 1.90892 1.42425 1.37592 1.64292 1.55521 1.69675 1.17120 1.39599 1.06389 0.79631 0.74264 0.72111 1.93544 1.86513 1.34083 1.80848 1.93551 1.74415 1.59053 1.66256 1.28107 1.16702 1.07246 1.07366 1.20027 0.94725 1.52246 0.90228 0.89535 1.24858 0.97099 0.93240 0.96455 1.69867 1.11020 1.46722 1.23829 0.86724 0.80021 0.79304 0.83191 1.19575 1.20472 1.18513 1.22323 0.98678 0.91898 1.01732 1.21058 0.92664 0.95182 1.02923 0.92532 0.88129 0.92687 0.85137 0.85610 0.84935 0.74028 0.88427 0.90101 0.91787 0.89815 0.88060 0.90329 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.26 10.50 -19.44 -0.20 -3.47 16 3 C 0.13 1.38 6.68 -39.26 -0.26 1.12 16 4 C -0.20 -1.90 9.04 -39.48 -0.36 -2.26 16 5 C -0.07 -0.67 10.03 -39.55 -0.40 -1.06 16 6 C -0.12 -1.29 6.14 -104.16 -0.64 -1.93 16 7 C -0.06 -0.69 5.33 -104.22 -0.56 -1.25 16 8 C -0.13 -1.50 9.61 -39.39 -0.38 -1.87 16 9 C -0.07 -0.80 3.27 -91.89 -0.30 -1.10 16 10 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 11 C 0.55 8.53 6.91 -10.99 -0.08 8.45 16 12 O -0.48 -9.23 13.56 -11.58 -0.16 -9.39 16 13 N -1.06 -16.79 5.53 31.22 0.17 -16.61 16 14 S 2.58 55.69 5.03 -107.50 -0.54 55.15 16 15 O -0.96 -22.10 18.08 -57.54 -1.04 -23.14 16 16 O -0.94 -23.64 17.04 -64.79 -1.10 -24.75 16 17 C -0.46 -10.76 4.71 36.01 0.17 -10.59 16 18 C -0.53 -15.29 9.68 -34.44 -0.33 -15.63 16 19 H 0.09 2.66 7.96 -52.48 -0.42 2.24 16 20 C 0.09 2.59 5.47 -17.82 -0.10 2.49 16 21 N -0.88 -26.44 13.96 55.43 0.77 -25.67 16 22 Si 0.88 20.81 27.47 -169.99 -4.67 16.14 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 26 C -0.11 -1.07 6.39 -25.32 -0.16 -1.24 16 27 C -0.08 -0.81 6.76 -26.83 -0.18 -1.00 16 28 H 0.06 0.32 7.68 -51.93 -0.40 -0.08 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.27 7.65 -51.93 -0.40 -0.13 16 31 H 0.13 0.91 6.31 -52.48 -0.33 0.58 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.13 1.26 7.77 -52.49 -0.41 0.85 16 34 H 0.43 5.10 8.07 -34.47 -0.28 4.82 16 35 H 0.10 2.25 6.25 -51.92 -0.32 1.93 16 36 H 0.08 1.67 7.57 -51.93 -0.39 1.28 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.13 6.94 -51.93 -0.36 0.77 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -37.86 355.01 -9.01 -46.87 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.01 Total: 4.21 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -2.58 Total: -24.69 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.95 Total: -42.29 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -2.51 Total: -60.74 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Atomic # 16 Polarization: 55.69 SS G_CDS: -0.54 Total: 55.15 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.86 -9.01 -46.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835408283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.001 kcal (2) G-P(sol) polarization free energy of solvation -37.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds