Wall clock time and date at job start Tue Mar 31 2020 22:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.66434 * 2 1 4 4 C 1.54700 * 110.74868 * 123.21269 * 2 1 3 5 5 C 1.51671 * 101.92090 * 93.22258 * 4 2 1 6 6 C 1.37312 * 132.05631 * 195.95987 * 5 4 2 7 7 C 1.39812 * 119.85248 * 179.28572 * 6 5 4 8 8 C 1.47606 * 120.25907 * 179.72199 * 7 6 5 9 9 O 1.21588 * 120.00377 * 359.72090 * 8 7 6 10 10 N 1.34775 * 119.99771 * 179.72599 * 8 7 6 11 11 S 1.65600 * 119.99957 * 179.97438 * 10 8 7 12 12 O 1.42099 * 104.27906 * 308.92548 * 11 10 8 13 13 O 1.42101 * 104.27759 * 181.06784 * 11 10 8 14 14 C 1.81396 * 104.45054 * 64.99768 * 11 10 8 15 15 C 1.52996 * 109.47320 * 179.97438 * 14 11 10 16 16 C 1.50702 * 109.47159 * 179.97438 * 15 14 11 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.39749 * 119.47253 * 359.44524 * 7 6 5 25 25 C 1.37471 * 120.19893 * 0.46122 * 24 7 6 26 26 C 1.39188 * 107.00261 * 15.15451 * 5 4 2 27 27 O 1.35999 * 111.15687 * 1.46275 * 26 5 4 28 28 H 1.09003 * 109.47103 * 296.78544 * 1 2 3 29 29 H 1.08998 * 109.47591 * 56.78883 * 1 2 3 30 30 H 1.09004 * 109.46962 * 176.79156 * 1 2 3 31 31 H 1.08999 * 110.93731 * 335.06446 * 4 2 1 32 32 H 1.09001 * 110.96907 * 211.39640 * 4 2 1 33 33 H 1.07993 * 120.07212 * 359.00635 * 6 5 4 34 34 H 0.97001 * 120.00156 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.46947 * 59.99849 * 14 11 10 36 36 H 1.09000 * 109.47486 * 300.00277 * 14 11 10 37 37 H 1.09004 * 109.47066 * 60.00127 * 15 14 11 38 38 H 1.08994 * 109.47405 * 299.99958 * 15 14 11 39 39 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 40 40 H 1.07995 * 119.89962 * 180.44149 * 24 7 6 41 41 H 1.08000 * 119.78391 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0780 -0.7924 1.2103 5 6 2.2671 -2.1763 0.6192 6 6 2.4491 -3.4074 1.1994 7 6 2.5848 -4.5428 0.3949 8 6 2.7870 -5.8697 1.0090 9 8 2.8411 -5.9779 2.2189 10 7 2.9117 -6.9614 0.2286 11 16 3.1392 -8.4501 0.9176 12 8 4.2242 -8.2589 1.8150 13 8 3.2507 -9.3349 -0.1888 14 6 1.6046 -8.7648 1.8321 15 6 1.6919 -10.1281 2.5210 16 6 0.4172 -10.3893 3.2814 17 1 -0.3760 -9.6564 3.2737 18 6 0.2612 -11.5667 3.9818 19 7 1.2270 -12.4593 3.9909 20 14 -1.3218 -11.8937 4.9179 21 1 -2.2436 -10.7418 4.7494 22 1 -1.9648 -13.1233 4.3886 23 1 -1.0158 -12.0765 6.3595 24 6 2.5218 -4.4121 -0.9950 25 6 2.3373 -3.1751 -1.5656 26 6 2.2113 -2.0388 -0.7648 27 8 2.0429 -0.7375 -1.1224 28 1 -0.3633 0.4631 0.9174 29 1 -0.3634 0.5629 -0.8598 30 1 -0.3633 -1.0261 -0.0575 31 1 1.3528 -0.8120 2.0238 32 1 3.0287 -0.3800 1.5485 33 1 2.4918 -3.4978 2.2747 34 1 2.8683 -6.8752 -0.7366 35 1 0.7621 -8.7609 1.1405 36 1 1.4625 -7.9868 2.5822 37 1 2.5344 -10.1324 3.2126 38 1 1.8337 -10.9059 1.7708 39 1 1.1174 -13.2875 4.4839 40 1 2.6187 -5.2855 -1.6228 41 1 2.2892 -3.0819 -2.6405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850926117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:41 Heat of formation + Delta-G solvation = -121.506357 kcal Electronic energy + Delta-G solvation = -26510.628600 eV Core-core repulsion = 22483.076929 eV Total energy + Delta-G solvation = -4027.551671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.76675 -40.18352 -37.57563 -36.66284 -35.61345 -34.58517 -33.89058 -33.62804 -31.33346 -31.17689 -30.71717 -27.34340 -25.63076 -24.66564 -22.59420 -22.08068 -21.74183 -21.28673 -19.43079 -18.42465 -17.68532 -17.61144 -16.81849 -16.53047 -16.18505 -15.79446 -15.55527 -15.06409 -14.86868 -14.64006 -14.53768 -14.22856 -14.01697 -13.61375 -13.42766 -13.13398 -13.02548 -12.75465 -12.58491 -12.52970 -12.34054 -11.79668 -11.72371 -11.71436 -11.60931 -11.35062 -11.20857 -11.08809 -10.99081 -10.86137 -10.46178 -10.35440 -10.30099 -9.70477 -9.39184 -9.16445 -8.64517 -8.49352 -6.11453 -4.16641 0.37101 0.51715 0.88232 2.27345 2.71149 2.72843 3.26902 3.33968 3.36412 3.37873 3.87076 3.93153 4.07437 4.20307 4.33830 4.38089 4.39426 4.55090 4.64392 4.69415 4.73364 4.89613 5.02046 5.05542 5.21216 5.24024 5.30811 5.32361 5.53114 5.59985 5.62018 5.68922 5.73767 5.85399 5.89653 6.04478 6.47288 6.62153 6.67471 7.29736 7.36266 7.45412 7.82030 8.17785 8.86601 9.47843 10.99731 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016078 B = 0.002575 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.098806 B =10871.826428 C =11971.646596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.076 3.924 3 H 0.119 0.881 4 C -0.106 4.106 5 C -0.185 4.185 6 C -0.002 4.002 7 C -0.170 4.170 8 C 0.585 3.415 9 O -0.487 6.487 10 N -1.057 6.057 11 S 2.567 3.433 12 O -0.936 6.936 13 O -0.953 6.953 14 C -0.575 4.575 15 C 0.029 3.971 16 C -0.518 4.518 17 H 0.063 0.937 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.043 4.043 25 C -0.147 4.147 26 C 0.138 3.862 27 O -0.296 6.296 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.144 0.856 34 H 0.426 0.574 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.265 0.735 40 H 0.140 0.860 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 26.330 -11.701 28.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 H 0.137 0.863 4 C -0.143 4.143 5 C -0.186 4.186 6 C -0.021 4.021 7 C -0.175 4.175 8 C 0.373 3.627 9 O -0.360 6.360 10 N -0.818 5.818 11 S 2.667 3.333 12 O -0.926 6.926 13 O -0.944 6.944 14 C -0.710 4.710 15 C -0.010 4.010 16 C -0.557 4.557 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.729 3.271 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.062 4.062 25 C -0.165 4.165 26 C 0.092 3.908 27 O -0.209 6.209 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.162 0.838 34 H 0.262 0.738 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.157 0.843 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.752 25.723 -11.077 28.017 hybrid contribution -1.436 0.006 0.198 1.450 sum -0.684 25.729 -10.879 27.943 Atomic orbital electron populations 1.22271 0.93819 1.03575 1.03364 1.23506 0.94982 0.96473 0.83040 0.86340 1.21896 1.03136 0.90743 0.98527 1.20685 1.08527 0.95491 0.93847 1.20412 0.91825 0.88949 1.00946 1.19638 1.10887 0.93122 0.93845 1.17973 0.74084 0.84349 0.86295 1.90988 1.46058 1.86068 1.12892 1.55367 1.80242 1.26213 1.19934 1.06701 0.79242 0.72012 0.75340 1.93599 1.50399 1.83063 1.65588 1.93591 1.87344 1.61415 1.52051 1.30339 1.16300 1.11485 1.12844 1.19000 1.00140 0.85846 0.96032 1.21021 1.00590 1.03358 1.30780 0.91903 1.25070 0.97029 0.95966 0.96458 1.69967 1.32303 1.08707 1.41874 0.86391 0.82921 0.78245 0.79593 1.19623 1.20815 1.20769 1.21053 0.94452 0.97174 0.93508 1.20166 1.07197 0.88927 1.00246 1.19890 0.93018 0.85113 0.92799 1.86877 1.79133 1.16367 1.38556 0.90337 0.91206 0.91625 0.88445 0.88692 0.83829 0.73834 0.85991 0.84996 0.94541 0.94726 0.92571 0.84271 0.84440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 9.51 37.16 0.35 -0.49 16 2 C 0.08 0.43 4.30 -25.84 -0.11 0.32 16 3 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.11 -0.65 6.65 -26.51 -0.18 -0.82 16 5 C -0.18 -1.66 6.25 -104.13 -0.65 -2.31 16 6 C 0.00 -0.03 9.58 -39.33 -0.38 -0.40 16 7 C -0.17 -1.89 5.88 -104.92 -0.62 -2.51 16 8 C 0.59 8.29 7.51 -12.44 -0.09 8.20 16 9 O -0.49 -8.68 14.46 -11.83 -0.17 -8.85 16 10 N -1.06 -13.92 5.55 30.47 0.17 -13.75 16 11 S 2.57 47.01 5.11 -107.50 -0.55 46.46 16 12 O -0.94 -20.68 17.04 -64.79 -1.10 -21.78 16 13 O -0.95 -18.82 18.08 -57.54 -1.04 -19.86 16 14 C -0.57 -11.48 5.82 37.16 0.22 -11.26 16 15 C 0.03 0.75 4.98 -27.88 -0.14 0.62 16 16 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 17 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 20 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.04 -0.37 9.52 -39.30 -0.37 -0.74 16 25 C -0.15 -1.20 10.05 -39.36 -0.40 -1.59 16 26 C 0.14 1.26 6.91 -38.73 -0.27 0.99 16 27 O -0.30 -2.56 10.82 -19.74 -0.21 -2.77 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.41 8.08 -51.93 -0.42 0.00 16 31 H 0.10 0.47 7.92 -51.93 -0.41 0.06 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.14 1.49 7.66 -52.49 -0.40 1.09 16 34 H 0.43 3.79 6.83 -34.47 -0.24 3.56 16 35 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 36 H 0.13 2.59 7.19 -51.92 -0.37 2.22 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.14 0.77 6.40 -52.49 -0.34 0.43 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -37.71 361.90 -9.88 -47.59 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.10 Total: 0.34 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -3.04 Total: -23.30 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.91 Total: -39.68 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -2.53 Total: -53.27 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 47.01 SS G_CDS: -0.55 Total: 46.46 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.71 -9.88 -47.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850926117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.913 kcal (2) G-P(sol) polarization free energy of solvation -37.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds