Wall clock time and date at job start Tue Mar 31 2020 22:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.79999 * 2 1 4 4 C 1.54695 * 110.74513 * 236.70258 * 2 1 3 5 5 C 1.51673 * 101.89550 * 267.04275 * 4 2 1 6 6 C 1.37312 * 132.07377 * 164.58299 * 5 4 2 7 7 C 1.39810 * 119.86111 * 180.74877 * 6 5 4 8 8 C 1.47607 * 120.26510 * 179.66959 * 7 6 5 9 9 O 1.21578 * 119.99917 * 359.72715 * 8 7 6 10 10 N 1.34771 * 119.99425 * 179.72481 * 8 7 6 11 11 S 1.65606 * 119.99478 * 180.02562 * 10 8 7 12 12 O 1.42094 * 104.27817 * 308.92926 * 11 10 8 13 13 O 1.42106 * 104.27580 * 181.07158 * 11 10 8 14 14 C 1.81396 * 104.45103 * 65.00142 * 11 10 8 15 15 C 1.52997 * 109.47360 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 C 1.39748 * 119.46590 * 359.40480 * 7 6 5 25 25 C 1.37475 * 120.20254 * 0.11720 * 24 7 6 26 26 C 1.39186 * 106.99370 * 344.47551 * 5 4 2 27 27 O 1.35994 * 111.17864 * 359.08509 * 26 5 4 28 28 H 1.09003 * 109.47504 * 298.15443 * 1 2 3 29 29 H 1.09007 * 109.47104 * 58.15154 * 1 2 3 30 30 H 1.09000 * 109.47254 * 178.15332 * 1 2 3 31 31 H 1.09000 * 110.94792 * 25.19408 * 4 2 1 32 32 H 1.09001 * 110.94869 * 148.89156 * 4 2 1 33 33 H 1.07999 * 120.06759 * 0.48947 * 6 5 4 34 34 H 0.96995 * 120.00337 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.47134 * 59.99751 * 14 11 10 36 36 H 1.08998 * 109.46953 * 300.00489 * 14 11 10 37 37 H 1.09002 * 109.47153 * 59.99820 * 15 14 11 38 38 H 1.09001 * 109.46832 * 300.00011 * 15 14 11 39 39 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 40 40 H 1.08001 * 119.90248 * 180.10350 * 24 7 6 41 41 H 1.08005 * 119.78449 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0779 -0.7942 -1.2092 5 6 2.2603 -2.1787 -0.6172 6 6 2.4486 -3.4094 -1.1961 7 6 2.5746 -4.5455 -0.3911 8 6 2.7701 -5.8739 -1.0042 9 8 2.8171 -5.9839 -2.2141 10 7 2.8965 -6.9646 -0.2228 11 16 3.1164 -8.4549 -0.9107 12 8 2.0744 -8.5546 -1.8716 13 8 3.1810 -9.3452 0.1950 14 6 4.7302 -8.3410 -1.7313 15 6 5.0513 -9.6730 -2.4121 16 6 6.3917 -9.5782 -3.0943 17 1 6.9581 -8.6598 -3.0467 18 6 6.8954 -10.6641 -3.7784 19 7 6.2060 -11.7825 -3.8359 20 14 8.5572 -10.5468 -4.6234 21 1 9.6043 -10.2403 -3.6160 22 1 8.8688 -11.8396 -5.2843 23 1 8.5193 -9.4670 -5.6423 24 6 2.5197 -4.4125 0.9990 25 6 2.3406 -3.1742 1.5687 26 6 2.2101 -2.0392 0.7668 27 8 2.0391 -0.7380 1.1235 28 1 -0.3634 0.4849 0.9061 29 1 -0.3634 0.5423 -0.8730 30 1 -0.3634 -1.0271 -0.0331 31 1 1.3545 -0.8112 -2.0244 32 1 3.0310 -0.3852 -1.5445 33 1 2.4951 -3.5002 -2.2713 34 1 2.8587 -6.8768 0.7424 35 1 5.4988 -8.1168 -0.9917 36 1 4.7026 -7.5479 -2.4785 37 1 4.2827 -9.8977 -3.1516 38 1 5.0790 -10.4657 -1.6645 39 1 6.5602 -12.5464 -4.3175 40 1 2.6179 -5.2852 1.6277 41 1 2.2995 -3.0792 2.6438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850926118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:43 Heat of formation + Delta-G solvation = -148.864465 kcal Electronic energy + Delta-G solvation = -26490.093859 eV Core-core repulsion = 22461.355851 eV Total energy + Delta-G solvation = -4028.738008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.40792 -41.26421 -38.48323 -38.12709 -37.24804 -35.97496 -35.74560 -34.18680 -33.18373 -31.91658 -31.45587 -27.87785 -27.64072 -25.58575 -23.65373 -23.24488 -22.60907 -22.29357 -20.79487 -19.57793 -19.10225 -18.41521 -18.25207 -17.42267 -17.33930 -16.88741 -16.79152 -16.53257 -16.38991 -16.20093 -15.24635 -15.20504 -14.89659 -14.60911 -14.49420 -14.25011 -13.84328 -13.80212 -13.69757 -13.65220 -13.38420 -13.27204 -13.23715 -13.01594 -12.93394 -12.85307 -12.34641 -12.25574 -12.18784 -12.06874 -11.88242 -11.82247 -11.77489 -11.54478 -11.09280 -10.64873 -10.06052 -9.33139 -8.27199 -6.41216 -1.03177 -0.42372 0.21333 1.25577 1.39941 1.41177 1.43979 1.52104 2.14630 2.36780 2.52346 2.63830 2.97442 3.06063 3.20601 3.36889 3.53556 3.74345 3.81133 3.93709 4.00474 4.01234 4.05697 4.12445 4.26843 4.43077 4.62367 4.68912 4.76178 4.79995 4.87832 5.00479 5.04455 5.13035 5.21332 5.22388 5.23783 5.24531 5.38672 5.65376 5.66790 6.03795 6.04194 6.36667 6.70922 7.28420 8.84979 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.002471 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.671084 B =11326.598749 C =12153.231331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.144 0.856 4 C -0.106 4.106 5 C -0.192 4.192 6 C -0.015 4.015 7 C -0.189 4.189 8 C 0.586 3.414 9 O -0.530 6.530 10 N -1.035 6.035 11 S 2.603 3.397 12 O -0.976 6.976 13 O -0.966 6.966 14 C -0.578 4.578 15 C 0.023 3.977 16 C -0.541 4.541 17 H 0.073 0.927 18 C -0.003 4.003 19 N -0.932 5.932 20 Si 0.975 3.025 21 H -0.261 1.261 22 H -0.282 1.282 23 H -0.267 1.267 24 C -0.034 4.034 25 C -0.148 4.148 26 C 0.135 3.865 27 O -0.307 6.307 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.447 0.553 35 H 0.152 0.848 36 H 0.134 0.866 37 H 0.005 0.995 38 H 0.017 0.983 39 H 0.268 0.732 40 H 0.170 0.830 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.236 27.651 12.881 31.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.017 3.983 3 H 0.162 0.838 4 C -0.143 4.143 5 C -0.193 4.193 6 C -0.034 4.034 7 C -0.194 4.194 8 C 0.377 3.623 9 O -0.406 6.406 10 N -0.802 5.802 11 S 2.702 3.298 12 O -0.966 6.966 13 O -0.956 6.956 14 C -0.712 4.712 15 C -0.016 4.016 16 C -0.580 4.580 17 H 0.092 0.908 18 C -0.202 4.202 19 N -0.571 5.571 20 Si 0.798 3.202 21 H -0.185 1.185 22 H -0.207 1.207 23 H -0.191 1.191 24 C -0.052 4.052 25 C -0.167 4.167 26 C 0.088 3.912 27 O -0.220 6.220 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.153 0.847 34 H 0.288 0.712 35 H 0.170 0.830 36 H 0.152 0.848 37 H 0.024 0.976 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.187 0.813 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.846 26.829 12.245 31.091 hybrid contribution 1.055 -0.258 -0.496 1.194 sum -8.790 26.571 11.749 30.353 Atomic orbital electron populations 1.22273 0.93295 1.02785 1.04458 1.23800 0.95481 0.97175 0.81802 0.83840 1.22017 1.04118 0.89077 0.99076 1.20919 1.07962 0.96076 0.94372 1.20437 0.92583 0.89664 1.00704 1.19454 1.13703 0.91135 0.95103 1.18483 0.72876 0.85214 0.85762 1.90968 1.48338 1.86449 1.14806 1.54769 1.79222 1.24915 1.21260 1.05326 0.77865 0.72508 0.74129 1.93548 1.54584 1.84646 1.63842 1.93568 1.88221 1.61576 1.52281 1.30240 1.19332 1.08298 1.13284 1.18831 0.98200 0.89265 0.95309 1.21440 1.03481 0.99478 1.33628 0.90847 1.26116 1.02329 0.94770 0.96949 1.70087 1.40302 1.03699 1.43045 0.85349 0.78428 0.77618 0.78761 1.18504 1.20711 1.19140 1.21352 0.92907 0.98535 0.92450 1.20489 1.06309 0.88390 1.01485 1.20198 0.92242 0.85720 0.93008 1.86863 1.79215 1.16190 1.39771 0.90844 0.88504 0.93318 0.87312 0.87684 0.84722 0.71180 0.82959 0.84786 0.97629 0.96480 0.92280 0.81287 0.81986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 9.49 71.98 0.68 -0.59 16 2 C 0.07 0.64 4.31 31.17 0.13 0.77 16 3 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 4 C -0.11 -1.09 6.65 30.74 0.20 -0.89 16 5 C -0.19 -3.21 6.25 -19.54 -0.12 -3.34 16 6 C -0.01 -0.31 9.58 22.43 0.21 -0.09 16 7 C -0.19 -4.01 5.88 -20.06 -0.12 -4.12 16 8 C 0.59 16.39 7.51 86.72 0.65 17.04 16 9 O -0.53 -19.35 14.46 12.42 0.18 -19.17 16 10 N -1.03 -26.15 5.56 -175.77 -0.98 -27.13 16 11 S 2.60 95.89 5.11 -56.49 -0.29 95.60 16 12 O -0.98 -44.29 17.04 -120.72 -2.06 -46.34 16 13 O -0.97 -37.77 18.08 -127.65 -2.31 -40.08 16 14 C -0.58 -23.39 5.82 71.98 0.42 -22.97 16 15 C 0.02 1.24 4.98 29.85 0.15 1.39 16 16 C -0.54 -30.84 9.11 25.60 0.23 -30.61 16 17 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 18 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 19 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 20 Si 0.98 44.09 29.54 68.60 2.03 46.11 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 C -0.03 -0.49 9.52 22.45 0.21 -0.28 16 25 C -0.15 -2.02 10.05 22.42 0.23 -1.80 16 26 C 0.14 2.19 6.95 22.82 0.16 2.35 16 27 O -0.31 -4.58 10.81 -93.48 -1.01 -5.60 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.05 0.53 8.12 -2.39 -0.02 0.51 16 31 H 0.11 0.86 7.92 -2.39 -0.02 0.84 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.13 2.92 7.66 -2.91 -0.02 2.90 16 34 H 0.45 6.92 6.82 -96.75 -0.66 6.26 16 35 H 0.15 5.10 8.14 -2.39 -0.02 5.08 16 36 H 0.13 5.37 7.19 -2.39 -0.02 5.36 16 37 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.17 1.25 6.40 -2.91 -0.02 1.24 16 41 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -83.81 361.97 -0.23 -84.04 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.41 Total: 12.48 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 3.51 Total: -42.84 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -0.69 Total: -84.19 kcal Atomic # 8 Polarization: -106.00 SS G_CDS: -5.19 Total: -111.19 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 95.89 SS G_CDS: -0.29 Total: 95.60 kcal Total: -83.81 -0.23 -84.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850926118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.828 kcal (2) G-P(sol) polarization free energy of solvation -83.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds