Wall clock time and date at job start Tue Mar 31 2020 22:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46946 * 2 1 4 4 C 1.35908 * 116.99845 * 180.02562 * 3 2 1 5 5 C 1.38905 * 119.97319 * 359.72181 * 4 3 2 6 6 C 1.38291 * 120.28795 * 179.72473 * 5 4 3 7 7 C 1.37939 * 120.23064 * 0.55398 * 6 5 4 8 8 C 1.39824 * 119.93925 * 359.72382 * 7 6 5 9 9 C 1.47223 * 120.14049 * 180.02562 * 8 7 6 10 10 C 1.34807 * 119.99988 * 222.51860 * 9 8 7 11 11 C 1.46437 * 119.99781 * 11.30236 * 10 9 8 12 12 O 1.21688 * 120.00088 * 7.05957 * 11 10 9 13 13 N 1.34778 * 119.99742 * 187.05007 * 11 10 9 14 14 S 1.65601 * 119.99720 * 180.02562 * 13 11 10 15 15 O 1.42101 * 104.27276 * 181.07045 * 14 13 11 16 16 O 1.42099 * 104.27716 * 308.93062 * 14 13 11 17 17 C 1.81401 * 104.45066 * 65.00198 * 14 13 11 18 18 C 1.50696 * 109.46916 * 179.97438 * 17 14 13 19 19 H 1.07998 * 120.00123 * 0.02562 * 18 17 14 20 20 C 1.37875 * 119.99723 * 179.97438 * 18 17 14 21 21 N 1.31520 * 120.00412 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00052 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47012 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46868 * 120.00350 * 22 20 18 25 25 H 1.48501 * 109.47210 * 240.00125 * 22 20 18 26 26 C 1.38388 * 119.97201 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.46695 * 60.00006 * 1 2 3 28 28 H 1.08996 * 109.46548 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46899 * 299.99805 * 1 2 3 30 30 H 1.08998 * 109.47354 * 239.99934 * 2 1 3 31 31 H 1.08995 * 109.47103 * 119.99798 * 2 1 3 32 32 H 1.07999 * 119.85128 * 359.97438 * 5 4 3 33 33 H 1.08001 * 119.88402 * 180.25627 * 6 5 4 34 34 H 1.08001 * 120.02818 * 179.74538 * 7 6 5 35 35 H 1.07998 * 119.99925 * 42.52030 * 9 8 7 36 36 H 1.08000 * 120.00245 * 191.30932 * 10 9 8 37 37 H 0.97002 * 119.99849 * 0.02562 * 13 11 10 38 38 H 1.08999 * 109.47236 * 299.99795 * 17 14 13 39 39 H 1.08997 * 109.47246 * 59.99588 * 17 14 13 40 40 H 0.96996 * 120.00431 * 179.97438 * 21 20 18 41 41 H 1.08001 * 120.11257 * 0.02768 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.1993 0.4234 0.0048 6 6 5.5713 0.5971 -0.0015 7 6 6.1107 1.8666 -0.0015 8 6 5.2683 2.9827 -0.0011 9 6 5.8393 4.3397 -0.0017 10 6 5.3081 5.2948 0.7876 11 6 4.3347 4.9335 1.8203 12 8 4.1012 3.7621 2.0531 13 7 3.6977 5.8983 2.5130 14 16 2.5975 5.4896 3.6813 15 8 2.1227 6.7377 4.1672 16 8 1.7235 4.5746 3.0348 17 6 3.5787 4.6438 4.9511 18 6 2.6777 4.2189 6.0818 19 1 1.6205 4.4355 6.0404 20 6 3.2029 3.5525 7.1686 21 7 4.4903 3.2882 7.2188 22 14 2.0859 3.0250 8.5699 23 1 0.6906 3.4378 8.2730 24 1 2.1436 1.5488 8.7201 25 1 2.5354 3.6687 9.8304 26 6 3.8820 2.8044 -0.0011 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.7835 -0.5733 0.0098 33 1 6.2227 -0.2644 -0.0015 34 1 7.1826 1.9984 -0.0023 35 1 6.6836 4.5700 -0.6345 36 1 5.6002 6.3264 0.6582 37 1 3.8838 6.8320 2.3272 38 1 4.0558 3.7655 4.5165 39 1 4.3430 5.3217 5.3311 40 1 4.8598 2.8198 7.9835 41 1 3.2254 3.6619 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860753068.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:57 Heat of formation + Delta-G solvation = -97.672764 kcal Electronic energy + Delta-G solvation = -27595.727533 eV Core-core repulsion = 23569.209363 eV Total energy + Delta-G solvation = -4026.518169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.34089 -39.45571 -37.39893 -36.17832 -35.10240 -34.04740 -33.72114 -33.31521 -31.91122 -29.75060 -29.25322 -29.00972 -24.85256 -23.59283 -23.32388 -22.38027 -21.44129 -19.77570 -19.01718 -18.30552 -17.22765 -16.74500 -16.38346 -16.11723 -15.95380 -15.71501 -15.56534 -14.79539 -14.67841 -14.35854 -14.28622 -13.97336 -13.55351 -13.35380 -13.10228 -12.74138 -12.53274 -12.52068 -12.14329 -11.98602 -11.75557 -11.62292 -11.51019 -11.42284 -11.22985 -11.12223 -10.91834 -10.77123 -10.67084 -10.60969 -10.35762 -10.04762 -9.83515 -9.74899 -9.11257 -8.69000 -8.14615 -7.92685 -6.30336 -4.40990 0.63300 1.11712 1.68992 1.87664 3.15344 3.21810 3.27236 3.31499 3.35911 3.38870 3.97364 4.24753 4.49670 4.65772 4.71258 4.89444 4.95461 5.02666 5.10250 5.12868 5.20808 5.23554 5.28794 5.32861 5.36918 5.46201 5.66850 5.68349 5.82493 5.93376 6.05523 6.10191 6.18918 6.46917 6.55378 6.63282 6.66090 6.82611 6.90588 7.12142 7.45445 7.64748 7.76864 7.90728 8.60347 9.25903 10.81556 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009588 B = 0.004303 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.469691 B = 6506.183222 C = 7420.827678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.311 6.311 4 C 0.125 3.875 5 C -0.196 4.196 6 C -0.095 4.095 7 C -0.133 4.133 8 C -0.047 4.047 9 C -0.013 4.013 10 C -0.211 4.211 11 C 0.553 3.447 12 O -0.473 6.473 13 N -1.057 6.057 14 S 2.553 3.447 15 O -0.972 6.972 16 O -0.949 6.949 17 C -0.404 4.404 18 C -0.532 4.532 19 H 0.070 0.930 20 C 0.077 3.923 21 N -0.877 5.877 22 Si 0.906 3.094 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.277 1.277 26 C -0.072 4.072 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.423 0.577 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.268 0.732 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 -2.053 -17.689 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.224 6.224 4 C 0.080 3.920 5 C -0.214 4.214 6 C -0.113 4.113 7 C -0.151 4.151 8 C -0.047 4.047 9 C -0.033 4.033 10 C -0.234 4.234 11 C 0.341 3.659 12 O -0.345 6.345 13 N -0.817 5.817 14 S 2.656 3.344 15 O -0.963 6.963 16 O -0.939 6.939 17 C -0.541 4.541 18 C -0.572 4.572 19 H 0.088 0.912 20 C -0.129 4.129 21 N -0.513 5.513 22 Si 0.732 3.268 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.091 4.091 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.257 0.743 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.072 -2.646 -17.523 17.986 hybrid contribution 0.396 -0.088 1.032 1.109 sum 3.468 -2.734 -16.491 17.072 Atomic orbital electron populations 1.21770 0.92898 1.02499 1.03813 1.22732 0.95923 0.82328 1.00962 1.86135 1.18904 1.28779 1.88623 1.18733 0.82411 0.93833 0.97037 1.21277 0.94469 0.97784 1.07899 1.20699 0.94150 0.97026 0.99459 1.21013 0.99044 0.91736 1.03354 1.18607 0.92339 0.92831 1.00902 1.22437 0.95266 0.91050 0.94519 1.23068 1.01149 1.00600 0.98546 1.18386 0.80198 0.85049 0.82279 1.91122 1.61588 1.16768 1.65037 1.55440 1.57235 1.16884 1.52112 1.07090 0.76092 0.75281 0.75971 1.93513 1.78699 1.43597 1.80513 1.93544 1.62080 1.64935 1.73363 1.27600 1.08818 1.08740 1.08949 1.20325 0.93608 1.40671 1.02584 0.91158 1.24919 0.95410 0.94400 0.98218 1.69971 1.11660 1.39096 1.30578 0.86301 0.80900 0.78611 0.81035 1.18952 1.20316 1.20302 1.20365 0.93701 0.95033 0.99974 0.91745 0.90653 0.91010 0.92539 0.92019 0.85885 0.86007 0.85965 0.83989 0.84085 0.74306 0.88337 0.89850 0.92265 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 37.16 0.38 -1.29 16 2 C 0.06 0.71 5.46 37.16 0.20 0.91 16 3 O -0.31 -5.32 10.13 -19.45 -0.20 -5.52 16 4 C 0.13 2.11 6.68 -39.28 -0.26 1.84 16 5 C -0.20 -2.79 9.04 -39.32 -0.36 -3.14 16 6 C -0.10 -1.22 10.02 -39.67 -0.40 -1.62 16 7 C -0.13 -1.71 9.79 -39.10 -0.38 -2.09 16 8 C -0.05 -0.66 4.57 -105.08 -0.48 -1.14 16 9 C -0.01 -0.14 9.81 -37.15 -0.36 -0.51 16 10 C -0.21 -2.45 9.91 -37.50 -0.37 -2.82 16 11 C 0.55 9.30 6.47 -12.96 -0.08 9.22 16 12 O -0.47 -9.89 10.22 -11.93 -0.12 -10.01 16 13 N -1.06 -17.44 5.60 30.20 0.17 -17.28 16 14 S 2.55 57.07 5.03 -107.50 -0.54 56.53 16 15 O -0.97 -22.91 18.08 -57.54 -1.04 -23.95 16 16 O -0.95 -24.18 17.04 -64.79 -1.10 -25.29 16 17 C -0.40 -10.35 5.64 36.00 0.20 -10.15 16 18 C -0.53 -15.26 9.13 -34.44 -0.31 -15.57 16 19 H 0.07 1.97 7.71 -52.49 -0.40 1.57 16 20 C 0.08 2.18 5.46 -17.82 -0.10 2.09 16 21 N -0.88 -25.54 13.29 55.43 0.74 -24.80 16 22 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 C -0.07 -1.21 6.52 -38.95 -0.25 -1.46 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 31 H 0.06 0.78 7.64 -51.93 -0.40 0.38 16 32 H 0.12 1.46 6.28 -52.49 -0.33 1.13 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.42 5.04 8.77 -34.48 -0.30 4.73 16 38 H 0.10 2.66 7.19 -51.92 -0.37 2.28 16 39 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.12 2.20 6.92 -52.49 -0.36 1.83 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -38.28 364.31 -9.29 -47.57 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.09 Total: 6.49 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -2.58 Total: -25.73 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.91 Total: -42.08 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -2.46 Total: -64.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 57.07 SS G_CDS: -0.54 Total: 56.53 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.28 -9.29 -47.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860753068.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.103 kcal (2) G-P(sol) polarization free energy of solvation -38.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds