Wall clock time and date at job start Tue Mar 31 2020 22:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99711 * 2 1 4 4 O 1.20822 * 120.00380 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99645 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46648 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.51623 * 55.10452 * 6 5 3 8 8 C 1.53307 * 109.50919 * 175.25210 * 6 5 3 9 9 N 1.47153 * 108.38235 * 172.22386 * 8 6 5 10 10 C 1.34773 * 120.97930 * 129.48665 * 9 8 6 11 11 O 1.21760 * 120.00020 * 354.05038 * 10 9 8 12 12 C 1.46235 * 119.99960 * 174.04457 * 10 9 8 13 13 S 1.75675 * 125.22834 * 339.00375 * 12 10 9 14 14 C 1.75475 * 92.09243 * 179.97438 * 13 12 10 15 15 C 1.32768 * 111.36210 * 0.02562 * 14 13 12 16 16 C 1.39546 * 125.23110 * 158.70217 * 12 10 9 17 17 C 1.40541 * 123.70895 * 359.97438 * 16 12 10 18 18 H 1.07993 * 120.00142 * 21.17632 * 17 16 12 19 19 C 1.40315 * 119.99359 * 201.17809 * 17 16 12 20 20 N 1.30637 * 120.00169 * 13.17122 * 19 17 16 21 21 Si 1.86799 * 119.99625 * 193.17451 * 19 17 16 22 22 H 1.48502 * 109.47350 * 59.99629 * 21 19 17 23 23 H 1.48498 * 109.47362 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47339 * 299.99917 * 21 19 17 25 25 C 1.47154 * 118.03622 * 309.46791 * 9 8 6 26 26 C 1.53287 * 108.38531 * 50.53316 * 25 9 8 27 27 O 1.42963 * 109.51121 * 294.99468 * 6 5 3 28 28 H 1.08993 * 109.46912 * 60.00246 * 1 2 3 29 29 H 1.09000 * 109.46636 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46989 * 300.00176 * 1 2 3 31 31 H 1.08998 * 109.47459 * 60.00213 * 5 3 2 32 32 H 1.09001 * 109.47147 * 299.99893 * 5 3 2 33 33 H 1.08999 * 109.67856 * 291.94784 * 8 6 5 34 34 H 1.09003 * 109.67838 * 52.50395 * 8 6 5 35 35 H 1.07999 * 124.31579 * 180.02562 * 14 13 12 36 36 H 1.07996 * 122.78206 * 180.02562 * 15 14 13 37 37 H 0.97001 * 119.99489 * 179.97438 * 20 19 17 38 38 H 1.09008 * 109.67600 * 290.80819 * 25 9 8 39 39 H 1.08999 * 109.70785 * 170.28044 * 25 9 8 40 40 H 1.09000 * 109.51372 * 187.77343 * 26 25 9 41 41 H 1.08997 * 109.51443 * 67.62435 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 1 3.5393 3.2577 0.8437 8 6 5.5262 2.8249 0.1213 9 7 5.9313 4.2267 -0.0685 10 6 6.7491 4.8378 0.8114 11 8 7.0771 4.2667 1.8356 12 6 7.2427 6.1865 0.5360 13 16 7.3152 6.9344 -1.0519 14 6 7.9905 8.4147 -0.3946 15 6 8.1434 8.3338 0.9217 16 6 7.7228 7.0794 1.4949 17 6 7.7918 6.7869 2.8678 18 1 7.7980 5.7598 3.2015 19 6 7.8525 7.8294 3.8050 20 7 7.5885 9.0547 3.4369 21 14 8.3110 7.4652 5.5788 22 1 9.6668 6.8612 5.6257 23 1 8.3047 8.7274 6.3610 24 1 7.3266 6.5173 6.1599 25 6 5.4175 4.9416 -1.2477 26 6 3.8969 4.7557 -1.3011 27 8 3.5898 3.3617 -1.2202 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.9565 0.7806 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 5.8356 2.4838 1.1093 34 1 5.9890 2.2021 -0.6443 35 1 8.2488 9.2810 -0.9856 36 1 8.5447 9.1423 1.5146 37 1 7.6301 9.7753 4.0849 38 1 5.8695 4.5319 -2.1511 39 1 5.6551 6.0023 -1.1669 40 1 3.5135 5.1590 -2.2384 41 1 3.4364 5.2791 -0.4633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866371113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:15 Heat of formation + Delta-G solvation = -132.874312 kcal Electronic energy + Delta-G solvation = -27303.084578 eV Core-core repulsion = 23275.039955 eV Total energy + Delta-G solvation = -4028.044623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61038 -39.49547 -37.64857 -36.51066 -35.97900 -33.94855 -33.17330 -33.09465 -29.56794 -28.90920 -27.83152 -27.14631 -25.40838 -23.37961 -22.44751 -21.43157 -20.54985 -19.62921 -18.67261 -17.64203 -17.18900 -16.95299 -16.66269 -16.25462 -15.93594 -15.46716 -15.04361 -14.84346 -14.66491 -14.38826 -13.85300 -13.74521 -13.64345 -13.43505 -12.61777 -12.52058 -12.41133 -12.27542 -12.15110 -12.12164 -11.95490 -11.62548 -11.40743 -11.07931 -11.06037 -10.94300 -10.92511 -10.61463 -10.45641 -10.35620 -10.06980 -9.81443 -9.62742 -9.11230 -8.55698 -7.91565 -7.53828 -7.14785 -7.08938 -4.59475 2.12979 2.18388 2.56175 2.94168 2.95437 2.99907 3.09061 3.50680 3.63641 3.76439 3.79265 3.83267 4.32328 4.61315 4.78162 4.92501 4.98809 5.08702 5.12402 5.17365 5.25844 5.32815 5.40404 5.48202 5.65611 5.67708 5.83585 5.97612 6.04770 6.12383 6.25712 6.28737 6.47073 6.76358 7.07681 7.15811 7.22959 7.30524 7.45128 7.65538 7.69878 8.22008 8.32674 8.53189 8.68782 9.43564 9.78087 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.003254 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.022559 B = 8603.064468 C = 9894.284002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.492 6.492 5 C -0.104 4.104 6 C 0.089 3.911 7 H 0.072 0.928 8 C 0.093 3.907 9 N -0.630 5.630 10 C 0.610 3.390 11 O -0.564 6.564 12 C -0.442 4.442 13 S -0.024 6.024 14 C -0.225 4.225 15 C -0.098 4.098 16 C 0.144 3.856 17 C -0.383 4.383 18 H 0.113 0.887 19 C 0.068 3.932 20 N -0.772 5.772 21 Si 0.925 3.075 22 H -0.258 1.258 23 H -0.276 1.276 24 H -0.258 1.258 25 C 0.062 3.938 26 C 0.057 3.943 27 O -0.375 6.375 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.290 0.710 38 H 0.064 0.936 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.586 -9.580 -5.825 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.282 6.282 3 C 0.304 3.696 4 O -0.378 6.378 5 C -0.142 4.142 6 C 0.030 3.970 7 H 0.090 0.910 8 C -0.031 4.031 9 N -0.366 5.366 10 C 0.409 3.591 11 O -0.447 6.447 12 C -0.561 4.561 13 S 0.233 5.767 14 C -0.358 4.358 15 C -0.130 4.130 16 C 0.133 3.867 17 C -0.414 4.414 18 H 0.131 0.869 19 C -0.154 4.154 20 N -0.396 5.396 21 Si 0.748 3.252 22 H -0.182 1.182 23 H -0.201 1.201 24 H -0.183 1.183 25 C -0.064 4.064 26 C -0.020 4.020 27 O -0.294 6.294 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.140 0.860 40 H 0.119 0.881 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.092 -9.825 -6.754 14.409 hybrid contribution 0.359 0.853 2.073 2.270 sum -7.732 -8.972 -4.680 12.735 Atomic orbital electron populations 1.23222 0.76544 1.03418 1.02561 1.86498 1.23326 1.33792 1.84591 1.23632 0.92039 0.81293 0.72662 1.90701 1.66928 1.36171 1.43966 1.21399 0.88088 0.97900 1.06817 1.22222 0.94432 0.91355 0.89014 0.91017 1.21956 0.92912 0.84586 1.03648 1.47828 1.51025 1.11439 1.26342 1.16912 0.76615 0.84267 0.81288 1.90623 1.61065 1.66139 1.26823 1.22409 1.37398 1.01861 0.94387 1.82849 1.70933 1.09881 1.13079 1.25319 1.09279 1.02111 0.99088 1.21697 0.99730 0.98634 0.92912 1.17881 0.86943 0.88719 0.93118 1.20071 1.35413 0.95932 0.89937 0.86912 1.26415 0.91702 0.94214 1.03116 1.69683 1.30798 1.01229 1.37903 0.86053 0.80862 0.78930 0.79331 1.18192 1.20052 1.18251 1.22862 0.93985 1.01065 0.88502 1.22918 0.94656 0.81903 1.02572 1.87876 1.81350 1.23051 1.37098 0.91949 0.88285 0.91983 0.86618 0.85953 0.88225 0.91711 0.84703 0.84017 0.89913 0.91813 0.86028 0.88105 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.03 10.57 -39.25 -0.41 -4.44 16 3 C 0.46 5.95 7.84 36.01 0.28 6.23 16 4 O -0.49 -7.99 15.17 -24.04 -0.36 -8.36 16 5 C -0.10 -1.14 5.53 -27.88 -0.15 -1.30 16 6 C 0.09 1.31 2.32 -26.57 -0.06 1.25 16 7 H 0.07 1.20 7.96 -51.93 -0.41 0.79 16 8 C 0.09 1.50 5.94 -3.53 -0.02 1.48 16 9 N -0.63 -12.52 3.02 -173.97 -0.53 -13.04 16 10 C 0.61 14.89 7.55 -13.05 -0.10 14.79 16 11 O -0.56 -15.09 14.16 5.13 0.07 -15.02 16 12 C -0.44 -11.04 6.08 -35.88 -0.22 -11.26 16 13 S -0.02 -0.49 18.85 -107.50 -2.03 -2.52 16 14 C -0.23 -4.82 11.07 28.86 0.32 -4.50 16 15 C -0.10 -2.36 9.05 -39.12 -0.35 -2.71 16 16 C 0.14 3.80 5.69 -106.21 -0.60 3.19 16 17 C -0.38 -10.18 8.72 -37.93 -0.33 -10.51 16 18 H 0.11 3.15 5.95 -52.49 -0.31 2.84 16 19 C 0.07 1.63 5.36 -17.28 -0.09 1.54 16 20 N -0.77 -18.33 10.84 55.57 0.60 -17.73 16 21 Si 0.93 18.19 29.58 -169.99 -5.03 13.16 16 22 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 25 C 0.06 1.07 5.61 -3.54 -0.02 1.05 16 26 C 0.06 0.89 6.98 37.31 0.26 1.15 16 27 O -0.37 -5.95 9.62 -49.61 -0.48 -6.43 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.10 1.68 7.06 -51.93 -0.37 1.31 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.14 2.45 8.06 -52.49 -0.42 2.03 16 36 H 0.14 3.39 6.38 -52.49 -0.33 3.05 16 37 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 38 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 39 H 0.12 2.30 3.64 -21.16 -0.08 2.22 16 40 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 352.02 15.07 5.30 5.30 Total: -1.00 -31.56 352.02 -7.75 -39.31 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.86 Total: 7.98 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -0.03 Total: 1.78 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.08 Total: -30.77 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -1.18 Total: -34.24 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -2.03 Total: -2.52 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.56 -7.75 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866371113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.565 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds