Wall clock time and date at job start Tue Mar 31 2020 22:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99711 * 2 1 4 4 O 1.20822 * 120.00380 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99645 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46648 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.51623 * 55.10452 * 6 5 3 8 8 C 1.53307 * 109.50919 * 175.25210 * 6 5 3 9 9 N 1.47153 * 108.38235 * 172.22386 * 8 6 5 10 10 C 1.34773 * 120.97930 * 129.48665 * 9 8 6 11 11 O 1.21760 * 120.00020 * 354.05038 * 10 9 8 12 12 C 1.46235 * 119.99960 * 174.04457 * 10 9 8 13 13 S 1.75675 * 125.22834 * 339.00375 * 12 10 9 14 14 C 1.75475 * 92.09243 * 179.97438 * 13 12 10 15 15 C 1.32768 * 111.36210 * 0.02562 * 14 13 12 16 16 C 1.39546 * 125.23110 * 158.70217 * 12 10 9 17 17 C 1.40541 * 123.70895 * 359.97438 * 16 12 10 18 18 H 1.07993 * 120.00142 * 21.17632 * 17 16 12 19 19 C 1.40315 * 119.99359 * 201.17809 * 17 16 12 20 20 N 1.30637 * 120.00169 * 13.17122 * 19 17 16 21 21 Si 1.86799 * 119.99625 * 193.17451 * 19 17 16 22 22 H 1.48502 * 109.47350 * 59.99629 * 21 19 17 23 23 H 1.48498 * 109.47362 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47339 * 299.99917 * 21 19 17 25 25 C 1.47154 * 118.03622 * 309.46791 * 9 8 6 26 26 C 1.53287 * 108.38531 * 50.53316 * 25 9 8 27 27 O 1.42963 * 109.51121 * 294.99468 * 6 5 3 28 28 H 1.08993 * 109.46912 * 60.00246 * 1 2 3 29 29 H 1.09000 * 109.46636 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46989 * 300.00176 * 1 2 3 31 31 H 1.08998 * 109.47459 * 60.00213 * 5 3 2 32 32 H 1.09001 * 109.47147 * 299.99893 * 5 3 2 33 33 H 1.08999 * 109.67856 * 291.94784 * 8 6 5 34 34 H 1.09003 * 109.67838 * 52.50395 * 8 6 5 35 35 H 1.07999 * 124.31579 * 180.02562 * 14 13 12 36 36 H 1.07996 * 122.78206 * 180.02562 * 15 14 13 37 37 H 0.97001 * 119.99489 * 179.97438 * 20 19 17 38 38 H 1.09008 * 109.67600 * 290.80819 * 25 9 8 39 39 H 1.08999 * 109.70785 * 170.28044 * 25 9 8 40 40 H 1.09000 * 109.51372 * 187.77343 * 26 25 9 41 41 H 1.08997 * 109.51443 * 67.62435 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 1 3.5393 3.2577 0.8437 8 6 5.5262 2.8249 0.1213 9 7 5.9313 4.2267 -0.0685 10 6 6.7491 4.8378 0.8114 11 8 7.0771 4.2667 1.8356 12 6 7.2427 6.1865 0.5360 13 16 7.3152 6.9344 -1.0519 14 6 7.9905 8.4147 -0.3946 15 6 8.1434 8.3338 0.9217 16 6 7.7228 7.0794 1.4949 17 6 7.7918 6.7869 2.8678 18 1 7.7980 5.7598 3.2015 19 6 7.8525 7.8294 3.8050 20 7 7.5885 9.0547 3.4369 21 14 8.3110 7.4652 5.5788 22 1 9.6668 6.8612 5.6257 23 1 8.3047 8.7274 6.3610 24 1 7.3266 6.5173 6.1599 25 6 5.4175 4.9416 -1.2477 26 6 3.8969 4.7557 -1.3011 27 8 3.5898 3.3617 -1.2202 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.9565 0.7806 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 5.8356 2.4838 1.1093 34 1 5.9890 2.2021 -0.6443 35 1 8.2488 9.2810 -0.9856 36 1 8.5447 9.1423 1.5146 37 1 7.6301 9.7753 4.0849 38 1 5.8695 4.5319 -2.1511 39 1 5.6551 6.0023 -1.1669 40 1 3.5135 5.1590 -2.2384 41 1 3.4364 5.2791 -0.4633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866371113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:15 Heat of formation + Delta-G solvation = -152.665792 kcal Electronic energy + Delta-G solvation = -27303.942801 eV Core-core repulsion = 23275.039955 eV Total energy + Delta-G solvation = -4028.902846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.66198 -40.90484 -39.25124 -37.80666 -37.47374 -35.55150 -34.93772 -34.29788 -31.04744 -30.36243 -29.20735 -28.34472 -26.92248 -24.66786 -24.10668 -22.85352 -21.62056 -21.26796 -20.46116 -18.82998 -18.63292 -18.17556 -17.86495 -17.65570 -17.22877 -17.01889 -16.62246 -16.30204 -15.98573 -15.82773 -15.38636 -15.36875 -14.56117 -14.43150 -14.23799 -14.09936 -13.93403 -13.77723 -13.72623 -13.23147 -13.07013 -13.04006 -12.88424 -12.76569 -12.63102 -12.31447 -12.06821 -11.96013 -11.79289 -11.74838 -11.53910 -11.41357 -11.17868 -10.80328 -10.44030 -9.54549 -9.31686 -8.91491 -8.82955 -6.47487 0.31429 1.20554 1.31241 1.34604 1.38133 1.44290 1.66504 1.70865 1.98981 2.13726 2.16567 2.48849 2.64727 3.27606 3.59130 3.66215 3.90798 3.97138 4.10849 4.20797 4.24374 4.32079 4.33361 4.39996 4.47848 4.54947 4.57123 4.70920 4.72049 4.78513 4.88907 4.94807 4.97432 5.26291 5.37738 5.38293 5.56011 5.68904 5.84912 6.05295 6.32949 6.50458 6.64981 6.74593 6.83140 7.60328 8.03083 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.003254 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.022559 B = 8603.064468 C = 9894.284002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.464 3.536 4 O -0.534 6.534 5 C -0.098 4.098 6 C 0.094 3.906 7 H 0.042 0.958 8 C 0.091 3.909 9 N -0.631 5.631 10 C 0.598 3.402 11 O -0.602 6.602 12 C -0.478 4.478 13 S 0.045 5.955 14 C -0.214 4.214 15 C -0.131 4.131 16 C 0.116 3.884 17 C -0.426 4.426 18 H 0.086 0.914 19 C 0.037 3.963 20 N -0.789 5.789 21 Si 0.988 3.012 22 H -0.257 1.257 23 H -0.250 1.250 24 H -0.267 1.267 25 C 0.061 3.939 26 C 0.061 3.939 27 O -0.376 6.376 28 H 0.059 0.941 29 H 0.134 0.866 30 H 0.057 0.943 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.172 0.828 36 H 0.136 0.864 37 H 0.302 0.698 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.134 0.866 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.025 -10.440 -7.397 15.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.308 3.692 4 O -0.423 6.423 5 C -0.135 4.135 6 C 0.035 3.965 7 H 0.061 0.939 8 C -0.032 4.032 9 N -0.365 5.365 10 C 0.397 3.603 11 O -0.488 6.488 12 C -0.596 4.596 13 S 0.302 5.698 14 C -0.347 4.347 15 C -0.162 4.162 16 C 0.105 3.895 17 C -0.456 4.456 18 H 0.104 0.896 19 C -0.184 4.184 20 N -0.413 5.413 21 Si 0.808 3.192 22 H -0.182 1.182 23 H -0.174 1.174 24 H -0.192 1.192 25 C -0.064 4.064 26 C -0.016 4.016 27 O -0.294 6.294 28 H 0.078 0.922 29 H 0.152 0.848 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.190 0.810 36 H 0.154 0.846 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.152 0.848 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.564 -10.708 -8.388 16.074 hybrid contribution 0.394 1.038 2.403 2.647 sum -8.170 -9.670 -5.986 14.003 Atomic orbital electron populations 1.23511 0.75030 1.05633 1.02245 1.86490 1.24813 1.32589 1.83972 1.23936 0.92656 0.81184 0.71461 1.90692 1.67917 1.37551 1.46133 1.21448 0.87127 0.95354 1.09566 1.22157 0.93029 0.93520 0.87798 0.93941 1.22182 0.94106 0.82817 1.04085 1.47848 1.49678 1.12923 1.26059 1.17111 0.77212 0.84459 0.81553 1.90582 1.62609 1.67106 1.28455 1.22925 1.37224 1.02445 0.97041 1.82433 1.69556 1.08309 1.09498 1.25840 1.06667 1.03598 0.98606 1.21579 1.02390 0.98240 0.94042 1.18323 0.87269 0.90231 0.93676 1.20057 1.38713 0.95531 0.91294 0.89606 1.27067 0.91166 0.93718 1.06417 1.69664 1.30366 1.01753 1.39495 0.85154 0.80008 0.79422 0.74661 1.18159 1.17360 1.19217 1.22967 0.95331 0.99984 0.88104 1.22948 0.93143 0.82010 1.03512 1.87891 1.81263 1.22943 1.37328 0.92242 0.84813 0.92420 0.83742 0.83157 0.89358 0.88771 0.81050 0.84607 0.88682 0.89587 0.87519 0.84795 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.36 -7.24 10.57 -51.39 -0.54 -7.79 16 3 C 0.46 11.28 7.84 71.24 0.56 11.84 16 4 O -0.53 -17.18 15.17 27.03 0.41 -16.77 16 5 C -0.10 -1.92 5.53 29.85 0.16 -1.75 16 6 C 0.09 2.69 2.32 30.70 0.07 2.76 16 7 H 0.04 1.47 7.96 -2.39 -0.02 1.45 16 8 C 0.09 2.86 5.94 86.36 0.51 3.38 16 9 N -0.63 -25.00 3.02 -822.50 -2.48 -27.49 16 10 C 0.60 30.14 7.55 86.32 0.65 30.79 16 11 O -0.60 -33.94 14.16 -4.54 -0.06 -34.00 16 12 C -0.48 -24.45 6.08 24.67 0.15 -24.30 16 13 S 0.04 1.81 18.85 -56.49 -1.06 0.75 16 14 C -0.21 -8.89 11.07 66.64 0.74 -8.15 16 15 C -0.13 -6.38 9.05 22.61 0.20 -6.18 16 16 C 0.12 6.35 5.69 -20.89 -0.12 6.23 16 17 C -0.43 -23.90 8.72 23.34 0.20 -23.70 16 18 H 0.09 5.16 5.95 -2.91 -0.02 5.14 16 19 C 0.04 1.83 5.36 85.38 0.46 2.29 16 20 N -0.79 -38.20 10.84 21.89 0.24 -37.96 16 21 Si 0.99 38.17 29.58 68.60 2.03 40.20 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 24 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 25 C 0.06 2.03 5.61 86.35 0.48 2.51 16 26 C 0.06 1.82 6.98 72.08 0.50 2.32 16 27 O -0.38 -11.28 9.62 -135.23 -1.30 -12.58 16 28 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 29 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 31 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.15 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.09 3.00 7.06 -2.39 -0.02 2.99 16 34 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.17 5.72 8.06 -2.91 -0.02 5.70 16 36 H 0.14 6.66 6.38 -2.91 -0.02 6.64 16 37 H 0.30 12.85 8.29 -92.71 -0.77 12.08 16 38 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 39 H 0.11 3.90 3.64 -21.95 -0.08 3.82 16 40 H 0.13 3.07 8.14 -2.39 -0.02 3.06 16 41 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -72.87 352.02 4.00 -68.87 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 1.00 Total: 27.10 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 5.78 Total: -0.33 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -2.25 Total: -65.45 kcal Atomic # 8 Polarization: -69.63 SS G_CDS: -1.50 Total: -71.13 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.06 Total: 0.75 kcal Total: -72.87 4.00 -68.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866371113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.800 kcal (2) G-P(sol) polarization free energy of solvation -72.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds