Wall clock time and date at job start Tue Mar 31 2020 22:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 116.99839 * 2 1 4 4 O 1.20826 * 120.00520 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99807 * 180.27571 * 3 2 1 6 6 O 1.42898 * 109.45863 * 34.75586 * 5 3 2 7 7 C 1.53040 * 109.46226 * 274.79673 * 5 3 2 8 8 C 1.53187 * 109.31423 * 178.61424 * 7 5 3 9 9 N 1.46931 * 108.77356 * 54.63604 * 8 7 5 10 10 C 1.34771 * 120.63023 * 126.37461 * 9 8 7 11 11 O 1.21763 * 120.00124 * 354.35175 * 10 9 8 12 12 C 1.46236 * 120.00110 * 174.35614 * 10 9 8 13 13 S 1.75669 * 125.22777 * 333.36944 * 12 10 9 14 14 C 1.75473 * 92.09281 * 179.97438 * 13 12 10 15 15 C 1.32764 * 111.36240 * 359.97438 * 14 13 12 16 16 C 1.39552 * 125.22982 * 153.06063 * 12 10 9 17 17 C 1.40541 * 123.71220 * 0.02562 * 16 12 10 18 18 H 1.07997 * 119.99906 * 28.94007 * 17 16 12 19 19 C 1.40305 * 120.00071 * 208.93195 * 17 16 12 20 20 N 1.30650 * 119.99616 * 356.09473 * 19 17 16 21 21 Si 1.86797 * 120.00166 * 176.09037 * 19 17 16 22 22 H 1.48498 * 109.46778 * 60.00325 * 21 19 17 23 23 H 1.48500 * 109.47184 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47300 * 300.00278 * 21 19 17 25 25 C 1.46923 * 118.73895 * 306.38906 * 9 8 7 26 26 C 1.53043 * 109.45893 * 154.73069 * 5 3 2 27 27 H 1.09002 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46751 * 299.99539 * 1 2 3 29 29 H 1.08996 * 109.47123 * 59.99425 * 1 2 3 30 30 H 0.96697 * 114.00304 * 300.00038 * 6 5 3 31 31 H 1.09001 * 109.49502 * 298.56744 * 7 5 3 32 32 H 1.08995 * 109.49512 * 58.66284 * 7 5 3 33 33 H 1.08997 * 109.58856 * 294.85151 * 8 7 5 34 34 H 1.08994 * 109.70773 * 174.49568 * 8 7 5 35 35 H 1.08002 * 124.31820 * 180.02562 * 14 13 12 36 36 H 1.08002 * 122.78200 * 180.02562 * 15 14 13 37 37 H 0.97006 * 119.99360 * 179.97438 * 20 19 17 38 38 H 1.09002 * 109.59231 * 293.82151 * 25 9 8 39 39 H 1.09007 * 109.58958 * 173.39891 * 25 9 8 40 40 H 1.09008 * 109.49440 * 301.33684 * 26 5 3 41 41 H 1.09002 * 109.49932 * 61.43230 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0063 6 8 4.0963 0.1960 -0.7790 7 6 4.0880 1.1779 1.4292 8 6 5.6191 1.2236 1.4160 9 7 6.0500 2.4307 0.6976 10 6 6.9015 3.3039 1.2711 11 8 7.2407 3.1513 2.4305 12 6 7.4179 4.4346 0.5009 13 16 7.5994 4.4724 -1.2459 14 6 8.2356 6.1074 -1.2089 15 6 8.2989 6.5737 0.0325 16 6 7.8367 5.6517 1.0402 17 6 7.8135 5.9452 2.4144 18 1 7.9204 5.1508 3.1381 19 6 7.6516 7.2704 2.8462 20 7 7.5991 8.2402 1.9723 21 14 7.5112 7.6479 4.6702 22 1 8.7411 7.1916 5.3661 23 1 7.3489 9.1115 4.8617 24 1 6.3328 6.9408 5.2328 25 6 5.5348 2.6679 -0.6577 26 6 4.0045 2.6060 -0.6212 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 3.8578 -0.6802 -0.4467 31 1 3.7040 2.0144 2.0130 32 1 3.7558 0.2401 1.8744 33 1 6.0068 0.3394 0.9101 34 1 5.9948 1.2534 2.4387 35 1 8.5363 6.6637 -2.0844 36 1 8.6630 7.5629 0.2678 37 1 7.4868 9.1563 2.2708 38 1 5.9155 1.9015 -1.3328 39 1 5.8526 3.6519 -1.0025 40 1 3.6129 2.6846 -1.6355 41 1 3.6214 3.4291 -0.0181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867163227.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:17 Heat of formation + Delta-G solvation = -138.276999 kcal Electronic energy + Delta-G solvation = -27860.528462 eV Core-core repulsion = 23832.249561 eV Total energy + Delta-G solvation = -4028.278901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.07445 -39.26814 -37.63840 -36.69641 -36.03638 -34.84684 -33.01780 -31.64041 -31.07311 -28.93344 -28.30681 -26.53179 -25.25373 -23.35204 -22.46491 -21.61021 -20.48804 -19.42395 -18.67611 -18.25473 -17.40918 -17.13717 -16.57372 -16.03795 -15.63315 -15.39365 -15.03312 -14.64690 -14.46122 -14.24955 -14.05663 -13.70628 -13.53428 -13.02168 -12.80401 -12.44773 -12.35037 -12.30341 -12.07044 -11.97676 -11.92284 -11.62992 -11.43834 -11.18744 -11.06509 -11.03808 -11.00303 -10.90081 -10.62055 -10.33766 -9.97184 -9.96333 -9.50433 -9.20723 -8.55284 -7.95590 -7.45870 -7.05183 -6.94215 -4.55857 1.93633 2.15867 2.39105 2.99575 3.00842 3.05649 3.11746 3.50046 3.75885 3.84560 3.86611 4.04736 4.30710 4.42639 4.54627 4.72419 4.83884 4.91768 5.15961 5.19754 5.24672 5.41024 5.54097 5.58046 5.70818 5.87286 5.93649 6.08388 6.09881 6.13321 6.30336 6.43417 6.54232 6.85968 7.19831 7.23693 7.27833 7.31851 7.50892 7.53095 7.74578 8.28353 8.41293 8.59352 8.73079 9.45174 9.91688 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.003636 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.569888 B = 7698.960795 C = 8509.605976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.439 3.561 4 O -0.495 6.495 5 C 0.158 3.842 6 O -0.534 6.534 7 C -0.157 4.157 8 C 0.128 3.872 9 N -0.628 5.628 10 C 0.612 3.388 11 O -0.561 6.561 12 C -0.431 4.431 13 S -0.020 6.020 14 C -0.226 4.226 15 C -0.097 4.097 16 C 0.146 3.854 17 C -0.393 4.393 18 H 0.106 0.894 19 C 0.069 3.931 20 N -0.788 5.788 21 Si 0.927 3.073 22 H -0.259 1.259 23 H -0.277 1.277 24 H -0.260 1.260 25 C 0.104 3.896 26 C -0.107 4.107 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.383 0.617 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.287 0.713 38 H 0.068 0.932 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.279 -11.268 -4.043 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.280 3.720 4 O -0.381 6.381 5 C 0.115 3.885 6 O -0.340 6.340 7 C -0.196 4.196 8 C 0.004 3.996 9 N -0.363 5.363 10 C 0.409 3.591 11 O -0.444 6.444 12 C -0.550 4.550 13 S 0.237 5.763 14 C -0.359 4.359 15 C -0.129 4.129 16 C 0.135 3.865 17 C -0.424 4.424 18 H 0.124 0.876 19 C -0.152 4.152 20 N -0.412 5.412 21 Si 0.750 3.250 22 H -0.184 1.184 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.022 4.022 26 C -0.146 4.146 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.232 0.768 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.137 0.863 40 H 0.101 0.899 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.343 -11.265 -4.948 15.449 hybrid contribution -0.625 0.902 1.909 2.202 sum -9.968 -10.363 -3.039 14.697 Atomic orbital electron populations 1.23272 0.76359 1.03659 1.02635 1.86474 1.23575 1.33713 1.84010 1.25069 0.93061 0.81619 0.72213 1.90685 1.66823 1.36317 1.44254 1.21220 0.82361 0.91019 0.93865 1.86636 1.75915 1.16593 1.54857 1.22620 0.99019 1.03887 0.94036 1.21197 0.90910 0.88115 0.99343 1.47850 1.48389 1.23549 1.16477 1.16928 0.76848 0.79986 0.85340 1.90639 1.61571 1.74465 1.17678 1.22644 1.36203 1.03899 0.92226 1.82900 1.71112 1.14592 1.07680 1.25294 1.09881 1.00185 1.00554 1.21869 0.99064 1.00856 0.91076 1.17922 0.86737 0.88311 0.93541 1.19868 1.36703 0.93162 0.92709 0.87571 1.26322 0.91767 0.95784 1.01298 1.69612 1.33267 1.01626 1.36742 0.86033 0.80626 0.77590 0.80713 1.18370 1.20158 1.18455 1.22107 0.90928 1.04919 0.84210 1.21893 0.98044 0.92528 1.02116 0.88048 0.91875 0.91860 0.76834 0.89661 0.90015 0.91740 0.88628 0.84636 0.83332 0.90177 0.91423 0.86291 0.89919 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.88 9.99 -44.44 -0.44 -4.33 16 3 C 0.44 5.85 6.83 36.01 0.25 6.10 16 4 O -0.49 -7.98 15.87 -18.75 -0.30 -8.28 16 5 C 0.16 2.08 0.94 -91.73 -0.09 1.99 16 6 O -0.53 -6.15 11.62 -49.22 -0.57 -6.73 16 7 C -0.16 -2.05 5.06 -26.61 -0.13 -2.19 16 8 C 0.13 2.01 6.20 -3.71 -0.02 1.99 16 9 N -0.63 -12.19 2.97 -174.47 -0.52 -12.71 16 10 C 0.61 14.82 7.48 -13.05 -0.10 14.72 16 11 O -0.56 -15.02 14.38 5.13 0.07 -14.95 16 12 C -0.43 -10.75 5.93 -35.88 -0.21 -10.97 16 13 S -0.02 -0.41 19.12 -107.50 -2.06 -2.47 16 14 C -0.23 -4.87 11.07 28.86 0.32 -4.55 16 15 C -0.10 -2.35 9.07 -39.12 -0.35 -2.71 16 16 C 0.15 3.86 5.67 -106.21 -0.60 3.26 16 17 C -0.39 -10.56 8.64 -37.94 -0.33 -10.89 16 18 H 0.11 2.98 6.23 -52.49 -0.33 2.66 16 19 C 0.07 1.68 5.47 -17.28 -0.09 1.59 16 20 N -0.79 -19.02 10.67 55.57 0.59 -18.43 16 21 Si 0.93 18.76 29.56 -169.99 -5.03 13.73 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 23 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 24 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 25 C 0.10 1.79 5.27 -3.71 -0.02 1.78 16 26 C -0.11 -1.65 4.62 -26.61 -0.12 -1.77 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.38 2.95 8.63 45.56 0.39 3.35 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.90 7.81 -51.93 -0.41 0.49 16 34 H 0.10 1.64 6.99 -51.93 -0.36 1.27 16 35 H 0.14 2.49 8.06 -52.49 -0.42 2.06 16 36 H 0.15 3.62 6.30 -52.49 -0.33 3.29 16 37 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 38 H 0.07 1.11 7.81 -51.93 -0.41 0.70 16 39 H 0.12 2.28 3.66 -22.46 -0.08 2.20 16 40 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 41 H 0.09 1.58 7.92 -51.93 -0.41 1.17 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -31.02 348.86 -7.46 -38.48 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.02 Total: 10.71 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -0.44 Total: -0.30 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.07 Total: -31.14 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.24 Total: -34.28 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -2.06 Total: -2.47 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.02 -7.46 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867163227.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.796 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds