Wall clock time and date at job start Tue Mar 31 2020 22:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46967 * 2 1 4 4 C 1.46772 * 124.34696 * 89.99969 * 3 2 1 5 5 C 1.54482 * 105.47113 * 163.00636 * 4 3 2 6 6 H 1.09001 * 110.96301 * 267.29459 * 5 4 3 7 7 S 1.81393 * 110.96817 * 143.57292 * 5 4 3 8 8 O 1.42099 * 110.54187 * 295.80714 * 7 5 4 9 9 O 1.42101 * 110.54685 * 72.55899 * 7 5 4 10 10 O 1.52205 * 104.45055 * 184.18561 * 7 5 4 11 11 C 1.35908 * 113.99449 * 286.11526 * 10 7 5 12 12 C 1.39149 * 119.93160 * 271.47654 * 11 10 7 13 13 C 1.38522 * 120.44327 * 179.72550 * 12 11 10 14 14 C 1.37678 * 120.30235 * 0.55163 * 13 12 11 15 15 C 1.40732 * 119.85370 * 359.72823 * 14 13 12 16 16 C 1.41399 * 120.21552 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00615 * 151.51713 * 16 15 14 18 18 C 1.39938 * 119.99914 * 331.51312 * 16 15 14 19 19 N 1.30831 * 120.00329 * 161.13606 * 18 16 15 20 20 Si 1.86802 * 119.99851 * 341.13329 * 18 16 15 21 21 H 1.48504 * 109.47015 * 95.32427 * 20 18 16 22 22 H 1.48506 * 109.47191 * 215.31895 * 20 18 16 23 23 H 1.48496 * 109.47285 * 335.31916 * 20 18 16 24 24 C 1.38096 * 119.93035 * 91.75317 * 11 10 7 25 25 C 1.54625 * 101.79858 * 25.43296 * 5 4 3 26 26 C 1.34416 * 124.35500 * 270.02245 * 3 2 1 27 27 O 1.21283 * 124.93544 * 0.34310 * 26 3 2 28 28 H 1.09002 * 109.46952 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47097 * 300.00265 * 1 2 3 30 30 H 1.09001 * 109.46798 * 60.00186 * 1 2 3 31 31 H 1.08997 * 109.47315 * 240.00483 * 2 1 3 32 32 H 1.08994 * 109.47139 * 119.99980 * 2 1 3 33 33 H 1.09000 * 110.24508 * 44.00632 * 4 3 2 34 34 H 1.08995 * 110.31616 * 282.04307 * 4 3 2 35 35 H 1.08004 * 119.78103 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.85157 * 180.28229 * 13 12 11 37 37 H 1.08003 * 120.07168 * 179.70318 * 14 13 12 38 38 H 0.97000 * 120.00344 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.15481 * 359.97438 * 24 11 10 40 40 H 1.08996 * 110.48298 * 93.86819 * 25 5 4 41 41 H 1.09008 * 110.48057 * 216.50435 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 1.2118 5 6 3.1739 3.3445 0.7487 6 1 4.2327 3.1040 0.8446 7 16 2.7686 4.8543 1.6689 8 8 1.4362 5.2638 1.3931 9 8 3.2470 4.7681 3.0042 10 8 3.6325 5.9321 1.0296 11 6 4.9492 5.8511 1.3564 12 6 5.4243 6.5018 2.4908 13 6 6.7632 6.4217 2.8370 14 6 7.6412 5.7057 2.0547 15 6 7.1754 5.0474 0.9014 16 6 8.0704 4.3095 0.0928 17 1 7.7117 3.4671 -0.4799 18 6 9.4211 4.6707 0.0346 19 7 10.3104 3.8114 -0.3926 20 14 9.9545 6.3800 0.5668 21 1 10.3989 6.3412 1.9833 22 1 11.0765 6.8381 -0.2915 23 1 8.8125 7.3194 0.4318 24 6 5.8138 5.1279 0.5587 25 6 2.7688 3.4768 -0.7377 26 6 2.2707 2.0966 -1.1097 27 8 2.1217 1.6943 -2.2441 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.8327 1.5532 1.9382 34 1 1.3643 2.5305 1.6446 35 1 4.7439 7.0699 3.1079 36 1 7.1208 6.9268 3.7221 37 1 8.6853 5.6496 2.3255 38 1 11.2467 4.0616 -0.4326 39 1 5.4461 4.6261 -0.3242 40 1 1.9736 4.2134 -0.8522 41 1 3.6320 3.7482 -1.3455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867187665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:04 Heat of formation + Delta-G solvation = -115.029510 kcal Electronic energy + Delta-G solvation = -27974.549456 eV Core-core repulsion = 23947.278642 eV Total energy + Delta-G solvation = -4027.270814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.55974 -40.38243 -37.32920 -37.10497 -36.62942 -36.00890 -34.23622 -33.79166 -30.76823 -29.96780 -29.54356 -28.02337 -25.58862 -24.09815 -22.93912 -22.60046 -21.22182 -20.11342 -19.61022 -18.44640 -17.99272 -17.36773 -16.85754 -16.38625 -16.21952 -16.03722 -15.50905 -14.94449 -14.73959 -14.66229 -14.20781 -13.99509 -13.75277 -13.68198 -13.28916 -13.05126 -12.80001 -12.69605 -12.46632 -12.34347 -12.21810 -12.10239 -12.02353 -11.97003 -11.86696 -11.71575 -11.36296 -11.33094 -10.93942 -10.88280 -10.68541 -10.12713 -9.90741 -9.90079 -9.45549 -9.01204 -8.15667 -7.97620 -7.23435 -4.82131 0.16846 1.93018 2.25290 2.39014 2.46858 2.75974 2.92164 3.04478 3.13096 3.56242 3.74764 3.79849 3.94854 4.10411 4.25633 4.60247 4.65059 4.80384 4.90319 4.98463 5.01114 5.14232 5.17414 5.41725 5.44893 5.54356 5.55583 5.62486 5.74106 5.87109 5.91549 6.08487 6.28796 6.31690 6.42471 6.78875 6.84177 6.94015 7.07399 7.24096 7.46297 7.66546 7.99414 8.01945 8.22718 8.45504 9.77422 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.004067 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.517404 B = 6883.063713 C = 8235.691498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.121 3.879 3 N -0.615 5.615 4 C 0.135 3.865 5 C -0.647 4.647 6 H 0.168 0.832 7 S 2.612 3.388 8 O -0.936 6.936 9 O -0.939 6.939 10 O -0.658 6.658 11 C 0.088 3.912 12 C -0.213 4.213 13 C -0.063 4.063 14 C -0.221 4.221 15 C 0.100 3.900 16 C -0.437 4.437 17 H 0.096 0.904 18 C 0.084 3.916 19 N -0.791 5.791 20 Si 0.909 3.091 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.241 1.241 24 C -0.222 4.222 25 C -0.130 4.130 26 C 0.531 3.469 27 O -0.524 6.524 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.290 0.710 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.662 -3.384 3.979 11.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.001 4.001 3 N -0.351 5.351 4 C 0.010 3.990 5 C -0.750 4.750 6 H 0.185 0.815 7 S 2.705 3.295 8 O -0.934 6.934 9 O -0.938 6.938 10 O -0.618 6.618 11 C 0.048 3.952 12 C -0.235 4.235 13 C -0.081 4.081 14 C -0.241 4.241 15 C 0.096 3.904 16 C -0.465 4.465 17 H 0.114 0.886 18 C -0.137 4.137 19 N -0.414 5.414 20 Si 0.735 3.265 21 H -0.192 1.192 22 H -0.213 1.213 23 H -0.164 1.164 24 C -0.244 4.244 25 C -0.171 4.171 26 C 0.318 3.682 27 O -0.400 6.400 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.928 -3.277 3.579 11.957 hybrid contribution 0.587 0.102 -0.128 0.610 sum -10.340 -3.175 3.452 11.354 Atomic orbital electron populations 1.22193 0.95623 1.02483 1.02746 1.21415 0.94480 0.80568 1.03611 1.48217 1.66296 1.13934 1.06614 1.21605 0.97665 0.91275 0.88418 1.32141 1.12410 1.20771 1.09724 0.81453 1.05185 0.74502 0.75181 0.74654 1.93603 1.35270 1.78936 1.85631 1.93659 1.79826 1.84988 1.35280 1.85598 1.29097 1.66298 1.80783 1.18041 0.75646 1.03958 0.97580 1.20461 0.96473 1.07941 0.98633 1.20526 0.92280 0.97168 0.98124 1.21301 0.99143 1.06118 0.97498 1.17444 0.91158 0.90376 0.91386 1.19499 0.91515 1.12440 1.23008 0.88604 1.26211 0.95999 0.99560 0.91956 1.69672 1.03643 1.35293 1.32751 0.86336 0.79295 0.82368 0.78507 1.19201 1.21350 1.16387 1.21060 0.94479 1.07854 1.01030 1.22149 1.04818 0.97643 0.92452 1.20601 0.76253 0.86990 0.84322 1.90732 1.53454 1.74988 1.20794 0.91232 0.92215 0.92055 0.89630 0.89954 0.88033 0.90551 0.86982 0.87070 0.87163 0.89897 0.86463 0.86424 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.12 1.14 6.65 -4.04 -0.03 1.12 16 3 N -0.62 -7.36 2.93 -172.37 -0.51 -7.87 16 4 C 0.13 1.44 6.93 -3.12 -0.02 1.42 16 5 C -0.65 -8.27 3.13 -25.10 -0.08 -8.35 16 6 H 0.17 2.12 6.84 -51.93 -0.36 1.77 16 7 S 2.61 40.64 4.54 -107.50 -0.49 40.15 16 8 O -0.94 -15.78 17.54 -67.04 -1.18 -16.95 16 9 O -0.94 -16.57 16.22 -67.04 -1.09 -17.65 16 10 O -0.66 -11.58 10.03 -51.77 -0.52 -12.10 16 11 C 0.09 1.73 4.82 -39.30 -0.19 1.54 16 12 C -0.21 -4.21 8.95 -39.14 -0.35 -4.56 16 13 C -0.06 -1.21 10.02 -39.68 -0.40 -1.61 16 14 C -0.22 -4.70 7.19 -38.84 -0.28 -4.98 16 15 C 0.10 2.23 5.13 -106.85 -0.55 1.68 16 16 C -0.44 -10.47 9.57 -37.74 -0.36 -10.83 16 17 H 0.10 2.38 8.06 -52.49 -0.42 1.96 16 18 C 0.08 1.99 5.40 -17.34 -0.09 1.89 16 19 N -0.79 -19.15 13.93 55.55 0.77 -18.38 16 20 Si 0.91 18.60 24.50 -169.99 -4.16 14.44 16 21 H -0.27 -5.21 6.68 56.52 0.38 -4.83 16 22 H -0.29 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.24 -5.04 6.86 56.52 0.39 -4.65 16 24 C -0.22 -4.49 8.21 -38.73 -0.32 -4.81 16 25 C -0.13 -1.70 6.43 -26.70 -0.17 -1.88 16 26 C 0.53 7.76 8.02 -10.82 -0.09 7.67 16 27 O -0.52 -9.31 17.59 5.55 0.10 -9.21 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.71 7.85 -51.93 -0.41 0.30 16 35 H 0.11 2.03 8.06 -52.48 -0.42 1.60 16 36 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.11 2.30 4.59 -52.48 -0.24 2.06 16 38 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 39 H 0.12 2.11 7.16 -52.49 -0.38 1.73 16 40 H 0.12 1.43 7.42 -51.93 -0.39 1.04 16 41 H 0.12 1.56 7.61 -51.92 -0.40 1.16 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -30.06 351.20 -9.45 -39.50 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.13 Total: 5.53 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -2.54 Total: -22.75 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.27 Total: -26.24 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -2.68 Total: -55.92 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.16 Total: 14.44 kcal Atomic # 16 Polarization: 40.64 SS G_CDS: -0.49 Total: 40.15 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.06 -9.45 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867187665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.527 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds