Wall clock time and date at job start Tue Mar 31 2020 22:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46967 * 2 1 4 4 C 1.46772 * 124.34696 * 89.99969 * 3 2 1 5 5 C 1.54482 * 105.47113 * 163.00636 * 4 3 2 6 6 H 1.09001 * 110.96301 * 267.29459 * 5 4 3 7 7 S 1.81393 * 110.96817 * 143.57292 * 5 4 3 8 8 O 1.42099 * 110.54187 * 295.80714 * 7 5 4 9 9 O 1.42101 * 110.54685 * 72.55899 * 7 5 4 10 10 O 1.52205 * 104.45055 * 184.18561 * 7 5 4 11 11 C 1.35908 * 113.99449 * 286.11526 * 10 7 5 12 12 C 1.39149 * 119.93160 * 271.47654 * 11 10 7 13 13 C 1.38522 * 120.44327 * 179.72550 * 12 11 10 14 14 C 1.37678 * 120.30235 * 0.55163 * 13 12 11 15 15 C 1.40732 * 119.85370 * 359.72823 * 14 13 12 16 16 C 1.41399 * 120.21552 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00615 * 151.51713 * 16 15 14 18 18 C 1.39938 * 119.99914 * 331.51312 * 16 15 14 19 19 N 1.30831 * 120.00329 * 161.13606 * 18 16 15 20 20 Si 1.86802 * 119.99851 * 341.13329 * 18 16 15 21 21 H 1.48504 * 109.47015 * 95.32427 * 20 18 16 22 22 H 1.48506 * 109.47191 * 215.31895 * 20 18 16 23 23 H 1.48496 * 109.47285 * 335.31916 * 20 18 16 24 24 C 1.38096 * 119.93035 * 91.75317 * 11 10 7 25 25 C 1.54625 * 101.79858 * 25.43296 * 5 4 3 26 26 C 1.34416 * 124.35500 * 270.02245 * 3 2 1 27 27 O 1.21283 * 124.93544 * 0.34310 * 26 3 2 28 28 H 1.09002 * 109.46952 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47097 * 300.00265 * 1 2 3 30 30 H 1.09001 * 109.46798 * 60.00186 * 1 2 3 31 31 H 1.08997 * 109.47315 * 240.00483 * 2 1 3 32 32 H 1.08994 * 109.47139 * 119.99980 * 2 1 3 33 33 H 1.09000 * 110.24508 * 44.00632 * 4 3 2 34 34 H 1.08995 * 110.31616 * 282.04307 * 4 3 2 35 35 H 1.08004 * 119.78103 * 359.97438 * 12 11 10 36 36 H 1.08001 * 119.85157 * 180.28229 * 13 12 11 37 37 H 1.08003 * 120.07168 * 179.70318 * 14 13 12 38 38 H 0.97000 * 120.00344 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.15481 * 359.97438 * 24 11 10 40 40 H 1.08996 * 110.48298 * 93.86819 * 25 5 4 41 41 H 1.09008 * 110.48057 * 216.50435 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 1.2118 5 6 3.1739 3.3445 0.7487 6 1 4.2327 3.1040 0.8446 7 16 2.7686 4.8543 1.6689 8 8 1.4362 5.2638 1.3931 9 8 3.2470 4.7681 3.0042 10 8 3.6325 5.9321 1.0296 11 6 4.9492 5.8511 1.3564 12 6 5.4243 6.5018 2.4908 13 6 6.7632 6.4217 2.8370 14 6 7.6412 5.7057 2.0547 15 6 7.1754 5.0474 0.9014 16 6 8.0704 4.3095 0.0928 17 1 7.7117 3.4671 -0.4799 18 6 9.4211 4.6707 0.0346 19 7 10.3104 3.8114 -0.3926 20 14 9.9545 6.3800 0.5668 21 1 10.3989 6.3412 1.9833 22 1 11.0765 6.8381 -0.2915 23 1 8.8125 7.3194 0.4318 24 6 5.8138 5.1279 0.5587 25 6 2.7688 3.4768 -0.7377 26 6 2.2707 2.0966 -1.1097 27 8 2.1217 1.6943 -2.2441 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.8327 1.5532 1.9382 34 1 1.3643 2.5305 1.6446 35 1 4.7439 7.0699 3.1079 36 1 7.1208 6.9268 3.7221 37 1 8.6853 5.6496 2.3255 38 1 11.2467 4.0616 -0.4326 39 1 5.4461 4.6261 -0.3242 40 1 1.9736 4.2134 -0.8522 41 1 3.6320 3.7482 -1.3455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867187665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:03 Heat of formation + Delta-G solvation = -134.785164 kcal Electronic energy + Delta-G solvation = -27975.406125 eV Core-core repulsion = 23947.278642 eV Total energy + Delta-G solvation = -4028.127484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.84983 -41.61011 -38.89915 -38.44694 -37.77589 -37.34576 -35.49143 -35.12645 -32.41107 -31.21580 -30.76243 -29.04692 -27.27012 -25.02900 -24.36672 -23.64767 -22.80157 -21.55497 -20.67000 -19.83115 -19.29529 -18.64016 -18.19755 -17.71791 -17.58812 -17.35129 -16.66401 -16.47423 -16.10824 -16.06744 -15.18365 -15.02049 -14.91839 -14.78999 -14.60939 -14.50286 -14.21639 -13.99770 -13.78516 -13.52407 -13.46558 -13.39557 -13.32651 -13.21767 -12.96027 -12.93357 -12.81278 -12.61214 -12.32898 -12.11225 -11.96704 -11.72969 -11.52989 -11.11909 -11.05194 -9.96755 -9.75178 -9.60900 -8.96206 -6.60104 -1.10933 0.40080 0.63076 1.02725 1.29158 1.31663 1.43405 1.51399 1.81842 2.09524 2.38206 2.45132 2.66265 2.85965 3.07813 3.28358 3.54400 3.69725 4.02633 4.06576 4.08745 4.18375 4.25571 4.31569 4.33481 4.43453 4.47271 4.52091 4.54740 4.75805 4.78855 4.81007 4.90244 5.15091 5.24336 5.36281 5.41766 5.47944 5.62900 5.78985 5.83456 6.03196 6.25759 6.53569 6.70463 6.91069 8.10405 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.004067 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.517404 B = 6883.063713 C = 8235.691498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.111 3.889 3 N -0.610 5.610 4 C 0.126 3.874 5 C -0.632 4.632 6 H 0.170 0.830 7 S 2.625 3.375 8 O -0.948 6.948 9 O -0.957 6.957 10 O -0.664 6.664 11 C 0.087 3.913 12 C -0.214 4.214 13 C -0.060 4.060 14 C -0.233 4.233 15 C 0.088 3.912 16 C -0.470 4.470 17 H 0.069 0.931 18 C 0.052 3.948 19 N -0.834 5.834 20 Si 0.955 3.045 21 H -0.249 1.249 22 H -0.280 1.280 23 H -0.248 1.248 24 C -0.224 4.224 25 C -0.135 4.135 26 C 0.522 3.478 27 O -0.565 6.565 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.149 0.851 37 H 0.114 0.886 38 H 0.297 0.703 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.702 -2.816 6.146 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.344 5.344 4 C 0.003 3.997 5 C -0.739 4.739 6 H 0.188 0.812 7 S 2.720 3.280 8 O -0.946 6.946 9 O -0.956 6.956 10 O -0.624 6.624 11 C 0.046 3.954 12 C -0.235 4.235 13 C -0.078 4.078 14 C -0.253 4.253 15 C 0.085 3.915 16 C -0.499 4.499 17 H 0.087 0.913 18 C -0.165 4.165 19 N -0.458 5.458 20 Si 0.778 3.222 21 H -0.174 1.174 22 H -0.207 1.207 23 H -0.172 1.172 24 C -0.246 4.246 25 C -0.176 4.176 26 C 0.310 3.690 27 O -0.445 6.445 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.151 0.849 34 H 0.115 0.885 35 H 0.149 0.851 36 H 0.166 0.834 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.977 -2.689 5.805 13.578 hybrid contribution 0.658 -0.098 -0.735 0.992 sum -11.318 -2.787 5.070 12.711 Atomic orbital electron populations 1.22161 0.94669 1.03718 1.02011 1.21700 0.95295 0.79301 1.04600 1.48372 1.65091 1.14711 1.06199 1.21951 0.98628 0.90796 0.88364 1.31925 1.13071 1.19932 1.08954 0.81219 1.04678 0.73731 0.75405 0.74210 1.93592 1.35671 1.79638 1.85742 1.93637 1.79992 1.85488 1.36438 1.85546 1.28230 1.67638 1.80982 1.18061 0.76422 1.03476 0.97418 1.20911 0.97114 1.07025 0.98488 1.20921 0.91767 0.96310 0.98799 1.21471 0.99858 1.06501 0.97487 1.17579 0.91779 0.90551 0.91628 1.19471 0.92582 1.13131 1.24691 0.91315 1.26818 0.95768 1.02081 0.91847 1.69701 1.04254 1.36790 1.35091 0.85642 0.78753 0.78596 0.79221 1.17357 1.20712 1.17163 1.21217 0.94000 1.07733 1.01623 1.22225 1.05282 0.97438 0.92616 1.20824 0.76189 0.87603 0.84382 1.90704 1.55524 1.75833 1.22426 0.89092 0.91271 0.94358 0.90871 0.86763 0.84947 0.88498 0.85065 0.83359 0.86866 0.89210 0.85175 0.85486 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.24 71.98 0.74 -1.75 16 2 C 0.11 1.89 6.65 86.38 0.57 2.47 16 3 N -0.61 -13.52 2.93 -817.85 -2.40 -15.91 16 4 C 0.13 2.34 6.93 86.83 0.60 2.95 16 5 C -0.63 -15.00 3.13 31.65 0.10 -14.90 16 6 H 0.17 4.05 6.84 -2.39 -0.02 4.03 16 7 S 2.62 76.11 4.54 -56.49 -0.26 75.85 16 8 O -0.95 -30.03 17.54 -118.57 -2.08 -32.11 16 9 O -0.96 -31.38 16.22 -118.57 -1.92 -33.31 16 10 O -0.66 -22.16 10.03 -61.60 -0.62 -22.77 16 11 C 0.09 3.24 4.82 22.45 0.11 3.34 16 12 C -0.21 -7.80 8.95 22.56 0.20 -7.60 16 13 C -0.06 -2.14 10.02 22.20 0.22 -1.91 16 14 C -0.23 -9.53 7.19 22.75 0.16 -9.37 16 15 C 0.09 3.89 5.13 -21.31 -0.11 3.78 16 16 C -0.47 -23.19 9.57 23.46 0.22 -22.96 16 17 H 0.07 3.62 8.06 -2.91 -0.02 3.60 16 18 C 0.05 2.50 5.40 85.25 0.46 2.96 16 19 N -0.83 -41.54 13.93 21.83 0.30 -41.24 16 20 Si 0.96 37.73 24.50 68.60 1.68 39.41 16 21 H -0.25 -9.04 6.68 99.48 0.66 -8.37 16 22 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.25 -9.98 6.86 99.48 0.68 -9.29 16 24 C -0.22 -8.88 8.21 22.82 0.19 -8.69 16 25 C -0.13 -3.43 6.43 30.62 0.20 -3.23 16 26 C 0.52 15.05 8.02 87.93 0.71 15.75 16 27 O -0.57 -20.49 17.59 -3.04 -0.05 -20.54 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 1.45 7.93 -2.39 -0.02 1.43 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.10 1.46 7.85 -2.39 -0.02 1.44 16 35 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 36 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 37 H 0.11 4.52 4.59 -2.91 -0.01 4.50 16 38 H 0.30 13.29 8.30 -92.71 -0.77 12.52 16 39 H 0.13 4.66 7.16 -2.91 -0.02 4.64 16 40 H 0.13 2.96 7.42 -2.39 -0.02 2.95 16 41 H 0.13 3.14 7.61 -2.38 -0.02 3.13 16 Total: -1.00 -65.43 351.20 0.02 -65.41 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.99 Total: 24.40 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 4.37 Total: -39.18 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -2.09 Total: -57.15 kcal Atomic # 8 Polarization: -104.06 SS G_CDS: -4.67 Total: -108.74 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 1.68 Total: 39.41 kcal Atomic # 16 Polarization: 76.11 SS G_CDS: -0.26 Total: 75.85 kcal Total: -65.43 0.02 -65.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867187665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.373 kcal (2) G-P(sol) polarization free energy of solvation -65.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds