Wall clock time and date at job start Tue Mar 31 2020 22:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 117.00207 * 2 1 4 4 O 1.20821 * 119.99714 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99577 * 179.97438 * 3 2 1 6 6 C 1.53779 * 113.60938 * 179.97438 * 5 3 2 7 7 C 1.53776 * 87.07988 * 139.98338 * 6 5 3 8 8 N 1.46499 * 113.61401 * 89.11599 * 7 6 5 9 9 S 1.65602 * 119.99988 * 146.39426 * 8 7 6 10 10 O 1.42105 * 106.40446 * 176.49013 * 9 8 7 11 11 O 1.42095 * 106.40623 * 309.40919 * 9 8 7 12 12 C 1.76200 * 107.21966 * 62.95348 * 9 8 7 13 13 C 1.37635 * 120.12728 * 245.33789 * 12 9 8 14 14 C 1.38613 * 120.25082 * 180.02562 * 13 12 9 15 15 C 1.38654 * 120.49958 * 359.97438 * 14 13 12 16 16 C 1.37603 * 120.24981 * 0.02562 * 15 14 13 17 17 C 1.40695 * 120.12872 * 65.05665 * 12 9 8 18 18 C 1.41393 * 120.24349 * 0.02562 * 17 12 9 19 19 H 1.07997 * 120.00228 * 331.69147 * 18 17 12 20 20 C 1.39953 * 120.00057 * 151.68936 * 18 17 12 21 21 N 1.30826 * 119.99916 * 347.67762 * 20 18 17 22 22 Si 1.86804 * 120.00033 * 167.67817 * 20 18 17 23 23 H 1.48499 * 109.46814 * 90.00050 * 22 20 18 24 24 H 1.48493 * 109.46679 * 209.99934 * 22 20 18 25 25 H 1.48498 * 109.47003 * 330.00015 * 22 20 18 26 26 C 1.53776 * 87.08357 * 334.56723 * 7 6 5 27 27 H 1.09002 * 109.47473 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47303 * 300.00226 * 1 2 3 29 29 H 1.09002 * 109.47258 * 59.99476 * 1 2 3 30 30 H 1.08995 * 112.90620 * 48.75583 * 5 3 2 31 31 H 1.09000 * 113.61691 * 254.53062 * 6 5 3 32 32 H 1.09004 * 113.61542 * 25.43603 * 6 5 3 33 33 H 1.09004 * 113.61520 * 220.01654 * 7 6 5 34 34 H 0.96996 * 120.00094 * 326.39298 * 8 7 6 35 35 H 1.08008 * 119.87817 * 359.97438 * 13 12 9 36 36 H 1.07997 * 119.75397 * 179.97438 * 14 13 12 37 37 H 1.08001 * 119.87629 * 179.97438 * 15 14 13 38 38 H 1.07998 * 120.12857 * 179.97438 * 16 15 14 39 39 H 0.96994 * 119.99992 * 179.97438 * 21 20 18 40 40 H 1.09002 * 113.61597 * 270.88698 * 26 7 6 41 41 H 1.08998 * 113.61670 * 139.98015 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1078 2.7140 -0.0001 7 6 5.1807 2.2272 0.9882 8 7 6.3903 1.7178 0.3373 9 16 7.8677 1.9270 1.0555 10 8 8.8130 1.2595 0.2307 11 8 7.9616 3.3058 1.3861 12 6 7.8338 1.0501 2.5834 13 6 7.9188 1.7343 3.7746 14 6 7.8929 1.0470 4.9781 15 6 7.7807 -0.3349 4.9970 16 6 7.6943 -1.0395 3.8183 17 6 7.7136 -0.3517 2.5906 18 6 7.6201 -1.0647 1.3732 19 1 7.1922 -0.5916 0.5018 20 6 8.0820 -2.3837 1.2975 21 7 8.8123 -2.8775 2.2641 22 14 7.6557 -3.4390 -0.1838 23 1 8.7014 -3.2755 -1.2253 24 1 7.5853 -4.8640 0.2277 25 1 6.3416 -3.0162 -0.7310 26 6 4.1906 1.1242 1.3979 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 4.0249 0.6357 -0.7540 31 1 4.5113 3.0283 -0.9627 32 1 3.4172 3.4405 0.4281 33 1 5.3955 2.9392 1.7851 34 1 6.3258 1.2580 -0.5143 35 1 8.0070 2.8108 3.7717 36 1 7.9607 1.5919 5.9080 37 1 7.7619 -0.8602 5.9404 38 1 7.6074 -2.1159 3.8353 39 1 9.1321 -3.7917 2.2118 40 1 3.5226 1.4161 2.2083 41 1 4.6609 0.1550 1.5639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867768826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:54 Heat of formation + Delta-G solvation = -123.357390 kcal Electronic energy + Delta-G solvation = -28068.130979 eV Core-core repulsion = 24040.499041 eV Total energy + Delta-G solvation = -4027.631938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.82726 -38.71440 -37.60983 -36.40804 -36.23367 -34.87487 -33.93299 -32.41516 -30.25384 -29.57841 -28.38776 -25.77205 -25.64837 -25.51995 -21.68431 -21.56101 -21.14577 -19.51423 -18.88757 -17.83225 -17.68009 -17.06581 -16.54099 -16.30440 -16.13567 -15.61933 -15.40646 -14.54074 -14.37979 -14.18409 -13.94357 -13.38976 -13.32761 -13.17584 -12.79011 -12.78181 -12.42808 -12.33241 -12.03946 -11.88641 -11.54317 -11.29587 -11.19975 -11.16029 -11.05681 -11.01465 -10.90923 -10.78158 -10.71842 -10.63457 -10.54738 -10.18226 -9.93419 -9.49698 -9.45514 -8.85357 -8.06012 -7.63334 -7.06431 -4.79427 1.46676 2.13424 2.31420 2.67419 2.71097 2.94734 2.97419 3.09583 3.74099 3.82296 4.35342 4.37991 4.49638 4.67478 4.79503 4.88159 4.95125 5.01445 5.07777 5.24898 5.36156 5.52102 5.58579 5.69582 5.76170 5.91395 5.97798 6.03704 6.20740 6.21688 6.31401 6.38548 6.54163 6.74535 6.92363 7.05610 7.27475 7.43599 7.48459 7.63767 7.69370 7.78841 7.85982 8.25694 8.46581 8.62255 9.86393 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009546 B = 0.005005 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.548842 B = 5592.968435 C = 6671.338145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.474 3.526 4 O -0.512 6.512 5 C -0.114 4.114 6 C -0.124 4.124 7 C 0.141 3.859 8 N -1.104 6.104 9 S 2.699 3.301 10 O -0.962 6.962 11 O -0.996 6.996 12 C -0.774 4.774 13 C -0.003 4.003 14 C -0.249 4.249 15 C -0.076 4.076 16 C -0.158 4.158 17 C 0.188 3.812 18 C -0.445 4.445 19 H 0.087 0.913 20 C 0.081 3.919 21 N -0.775 5.775 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.255 1.255 26 C -0.137 4.137 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.411 0.589 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.288 0.712 40 H 0.092 0.908 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 1.539 -3.341 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.400 6.400 5 C -0.133 4.133 6 C -0.163 4.163 7 C 0.032 3.968 8 N -0.858 5.858 9 S 2.797 3.203 10 O -0.953 6.953 11 O -0.986 6.986 12 C -0.869 4.869 13 C -0.023 4.023 14 C -0.270 4.270 15 C -0.095 4.095 16 C -0.178 4.178 17 C 0.183 3.817 18 C -0.473 4.473 19 H 0.105 0.895 20 C -0.140 4.140 21 N -0.398 5.398 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.178 1.178 26 C -0.177 4.177 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.245 0.755 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.142 0.858 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.887 2.228 -3.497 11.650 hybrid contribution -0.687 -1.326 -0.312 1.526 sum -11.575 0.901 -3.810 12.219 Atomic orbital electron populations 1.23248 0.76813 1.03579 1.02337 1.86573 1.23069 1.33704 1.83869 1.23811 0.91933 0.81091 0.71447 1.90633 1.67129 1.36471 1.45738 1.22671 0.86549 1.01365 1.02681 1.23367 0.97339 0.94242 1.01357 1.21344 0.84569 0.95371 0.95537 1.55600 1.22740 1.73494 1.33951 1.01167 0.71809 0.72884 0.74437 1.93555 1.57922 1.75774 1.68025 1.93457 1.85884 1.33715 1.85578 1.29808 1.35271 1.05928 1.15940 1.20247 0.92579 0.97604 0.91854 1.20486 1.16009 0.94361 0.96126 1.20904 0.97466 0.94066 0.97094 1.21506 1.04906 0.99908 0.91438 1.16973 0.82837 0.88424 0.93444 1.19822 1.33860 0.97199 0.96425 0.89520 1.25945 0.92155 0.98052 0.97883 1.69778 1.22074 1.16421 1.31502 0.86211 0.80677 0.78497 0.81068 1.18708 1.19823 1.17816 1.23478 0.97849 1.02816 0.93527 0.88217 0.91971 0.92101 0.85604 0.89766 0.87648 0.87139 0.75539 0.87449 0.88790 0.88886 0.85771 0.90110 0.88921 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.39 10.56 -39.26 -0.41 -4.80 16 3 C 0.47 6.19 7.48 36.01 0.27 6.46 16 4 O -0.51 -7.63 15.65 -18.75 -0.29 -7.93 16 5 C -0.11 -1.36 4.09 -90.96 -0.37 -1.74 16 6 C -0.12 -1.46 7.19 -25.92 -0.19 -1.64 16 7 C 0.14 1.96 4.48 -67.12 -0.30 1.66 16 8 N -1.10 -17.56 4.84 -4.20 -0.02 -17.58 16 9 S 2.70 55.91 4.92 -107.50 -0.53 55.38 16 10 O -0.96 -22.96 16.56 -57.17 -0.95 -23.91 16 11 O -1.00 -21.72 16.57 -57.17 -0.95 -22.67 16 12 C -0.77 -17.54 5.90 -38.87 -0.23 -17.77 16 13 C 0.00 -0.06 9.53 -39.66 -0.38 -0.44 16 14 C -0.25 -5.26 10.05 -39.29 -0.39 -5.65 16 15 C -0.08 -1.65 10.02 -39.66 -0.40 -2.05 16 16 C -0.16 -3.73 8.67 -38.87 -0.34 -4.07 16 17 C 0.19 4.53 5.55 -106.83 -0.59 3.93 16 18 C -0.44 -10.50 7.65 -37.74 -0.29 -10.79 16 19 H 0.09 1.88 5.78 -52.49 -0.30 1.57 16 20 C 0.08 1.87 5.23 -17.34 -0.09 1.78 16 21 N -0.77 -18.43 10.87 55.55 0.60 -17.83 16 22 Si 0.91 17.25 29.58 -169.99 -5.03 12.22 16 23 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 24 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 25 H -0.25 -4.57 7.11 56.52 0.40 -4.17 16 26 C -0.14 -1.81 7.43 -25.92 -0.19 -2.00 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.55 8.13 -51.92 -0.42 0.12 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.13 1.36 8.12 -51.93 -0.42 0.94 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.11 1.23 7.43 -51.93 -0.39 0.84 16 33 H 0.11 1.55 7.83 -51.93 -0.41 1.14 16 34 H 0.41 5.68 8.62 -34.47 -0.30 5.38 16 35 H 0.11 2.16 7.33 -52.48 -0.38 1.78 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.12 2.98 6.22 -52.49 -0.33 2.65 16 39 H 0.29 6.17 8.30 -40.82 -0.34 5.84 16 40 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 41 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -30.99 359.24 -9.63 -40.62 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -5.04 Total: 12.04 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: -2.42 Total: -30.95 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.58 Total: -35.41 kcal Atomic # 8 Polarization: -56.70 SS G_CDS: -2.60 Total: -59.30 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Atomic # 16 Polarization: 55.91 SS G_CDS: -0.53 Total: 55.38 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.99 -9.63 -40.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867768826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.738 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds