Wall clock time and date at job start Tue Mar 31 2020 22:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 117.00207 * 2 1 4 4 O 1.20821 * 119.99714 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99577 * 179.97438 * 3 2 1 6 6 C 1.53779 * 113.60938 * 179.97438 * 5 3 2 7 7 C 1.53776 * 87.07988 * 139.98338 * 6 5 3 8 8 N 1.46499 * 113.61401 * 89.11599 * 7 6 5 9 9 S 1.65602 * 119.99988 * 146.39426 * 8 7 6 10 10 O 1.42105 * 106.40446 * 176.49013 * 9 8 7 11 11 O 1.42095 * 106.40623 * 309.40919 * 9 8 7 12 12 C 1.76200 * 107.21966 * 62.95348 * 9 8 7 13 13 C 1.37635 * 120.12728 * 245.33789 * 12 9 8 14 14 C 1.38613 * 120.25082 * 180.02562 * 13 12 9 15 15 C 1.38654 * 120.49958 * 359.97438 * 14 13 12 16 16 C 1.37603 * 120.24981 * 0.02562 * 15 14 13 17 17 C 1.40695 * 120.12872 * 65.05665 * 12 9 8 18 18 C 1.41393 * 120.24349 * 0.02562 * 17 12 9 19 19 H 1.07997 * 120.00228 * 331.69147 * 18 17 12 20 20 C 1.39953 * 120.00057 * 151.68936 * 18 17 12 21 21 N 1.30826 * 119.99916 * 347.67762 * 20 18 17 22 22 Si 1.86804 * 120.00033 * 167.67817 * 20 18 17 23 23 H 1.48499 * 109.46814 * 90.00050 * 22 20 18 24 24 H 1.48493 * 109.46679 * 209.99934 * 22 20 18 25 25 H 1.48498 * 109.47003 * 330.00015 * 22 20 18 26 26 C 1.53776 * 87.08357 * 334.56723 * 7 6 5 27 27 H 1.09002 * 109.47473 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47303 * 300.00226 * 1 2 3 29 29 H 1.09002 * 109.47258 * 59.99476 * 1 2 3 30 30 H 1.08995 * 112.90620 * 48.75583 * 5 3 2 31 31 H 1.09000 * 113.61691 * 254.53062 * 6 5 3 32 32 H 1.09004 * 113.61542 * 25.43603 * 6 5 3 33 33 H 1.09004 * 113.61520 * 220.01654 * 7 6 5 34 34 H 0.96996 * 120.00094 * 326.39298 * 8 7 6 35 35 H 1.08008 * 119.87817 * 359.97438 * 13 12 9 36 36 H 1.07997 * 119.75397 * 179.97438 * 14 13 12 37 37 H 1.08001 * 119.87629 * 179.97438 * 15 14 13 38 38 H 1.07998 * 120.12857 * 179.97438 * 16 15 14 39 39 H 0.96994 * 119.99992 * 179.97438 * 21 20 18 40 40 H 1.09002 * 113.61597 * 270.88698 * 26 7 6 41 41 H 1.08998 * 113.61670 * 139.98015 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1078 2.7140 -0.0001 7 6 5.1807 2.2272 0.9882 8 7 6.3903 1.7178 0.3373 9 16 7.8677 1.9270 1.0555 10 8 8.8130 1.2595 0.2307 11 8 7.9616 3.3058 1.3861 12 6 7.8338 1.0501 2.5834 13 6 7.9188 1.7343 3.7746 14 6 7.8929 1.0470 4.9781 15 6 7.7807 -0.3349 4.9970 16 6 7.6943 -1.0395 3.8183 17 6 7.7136 -0.3517 2.5906 18 6 7.6201 -1.0647 1.3732 19 1 7.1922 -0.5916 0.5018 20 6 8.0820 -2.3837 1.2975 21 7 8.8123 -2.8775 2.2641 22 14 7.6557 -3.4390 -0.1838 23 1 8.7014 -3.2755 -1.2253 24 1 7.5853 -4.8640 0.2277 25 1 6.3416 -3.0162 -0.7310 26 6 4.1906 1.1242 1.3979 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 4.0249 0.6357 -0.7540 31 1 4.5113 3.0283 -0.9627 32 1 3.4172 3.4405 0.4281 33 1 5.3955 2.9392 1.7851 34 1 6.3258 1.2580 -0.5143 35 1 8.0070 2.8108 3.7717 36 1 7.9607 1.5919 5.9080 37 1 7.7619 -0.8602 5.9404 38 1 7.6074 -2.1159 3.8353 39 1 9.1321 -3.7917 2.2118 40 1 3.5226 1.4161 2.2083 41 1 4.6609 0.1550 1.5639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867768826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:52 Heat of formation + Delta-G solvation = -142.828844 kcal Electronic energy + Delta-G solvation = -28068.975325 eV Core-core repulsion = 24040.499041 eV Total energy + Delta-G solvation = -4028.476284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.82714 -39.76557 -39.30987 -37.98316 -37.39591 -36.63117 -35.63687 -33.69839 -31.97160 -31.30198 -29.23029 -27.31872 -26.71537 -26.61522 -23.39034 -22.93138 -22.53496 -20.73078 -20.20275 -19.47177 -18.96400 -18.35719 -17.79197 -17.59308 -17.28519 -17.11075 -16.89463 -16.04511 -15.96221 -15.24172 -15.05177 -14.99398 -14.86637 -14.42786 -14.30743 -13.91230 -13.60788 -13.50706 -13.35208 -13.21417 -12.95047 -12.91791 -12.89926 -12.81479 -12.74282 -12.48080 -12.32041 -12.10974 -11.79505 -11.77956 -11.68160 -11.60885 -11.25148 -11.13721 -11.06689 -10.22761 -9.78636 -9.38275 -8.75554 -6.56027 -0.15021 0.58419 1.02416 1.13119 1.40700 1.51853 1.56509 1.80381 2.18638 2.33372 2.67923 3.02414 3.37312 3.46403 3.53156 3.77977 3.84085 3.95956 4.14875 4.29470 4.32593 4.33883 4.39832 4.54489 4.66761 4.71402 4.75323 4.76917 4.88637 4.99740 5.03909 5.13633 5.20267 5.34385 5.37976 5.45590 5.56925 5.75871 5.87309 6.06002 6.12782 6.25110 6.52750 6.72305 6.72507 6.89099 8.20227 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009546 B = 0.005005 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.548842 B = 5592.968435 C = 6671.338145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.476 3.524 4 O -0.533 6.533 5 C -0.109 4.109 6 C -0.111 4.111 7 C 0.129 3.871 8 N -1.090 6.090 9 S 2.721 3.279 10 O -0.997 6.997 11 O -1.008 7.008 12 C -0.789 4.789 13 C -0.015 4.015 14 C -0.252 4.252 15 C -0.077 4.077 16 C -0.185 4.185 17 C 0.167 3.833 18 C -0.469 4.469 19 H 0.098 0.902 20 C 0.040 3.960 21 N -0.809 5.809 22 Si 0.970 3.030 23 H -0.269 1.269 24 H -0.264 1.264 25 H -0.237 1.237 26 C -0.135 4.135 27 H 0.127 0.873 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.140 0.860 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.423 0.577 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.294 0.706 40 H 0.101 0.899 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.933 1.648 -3.962 13.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.321 3.679 4 O -0.423 6.423 5 C -0.128 4.128 6 C -0.150 4.150 7 C 0.020 3.980 8 N -0.849 5.849 9 S 2.818 3.182 10 O -0.988 6.988 11 O -0.998 6.998 12 C -0.883 4.883 13 C -0.035 4.035 14 C -0.272 4.272 15 C -0.096 4.096 16 C -0.205 4.205 17 C 0.162 3.838 18 C -0.497 4.497 19 H 0.115 0.885 20 C -0.178 4.178 21 N -0.433 5.433 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.188 1.188 25 H -0.160 1.160 26 C -0.175 4.175 27 H 0.145 0.855 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.259 0.741 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.314 2.325 -4.095 13.183 hybrid contribution -0.297 -1.296 -0.029 1.330 sum -12.611 1.029 -4.124 13.307 Atomic orbital electron populations 1.23540 0.75033 1.05531 1.02566 1.86556 1.24915 1.33253 1.83487 1.23900 0.92173 0.81012 0.70823 1.90624 1.67662 1.37136 1.46868 1.22700 0.86213 1.01754 1.02138 1.23298 0.96081 0.94246 1.01388 1.21562 0.84108 0.95910 0.96390 1.55123 1.22010 1.73651 1.34102 1.00358 0.72216 0.72118 0.73555 1.93503 1.60253 1.76371 1.68644 1.93435 1.86516 1.34129 1.85717 1.30110 1.34944 1.05880 1.17354 1.20560 0.92413 0.98483 0.92015 1.20858 1.14782 0.94326 0.97202 1.21224 0.96178 0.94617 0.97551 1.21560 1.06827 0.99675 0.92411 1.17250 0.83349 0.89202 0.93970 1.20134 1.34695 0.98078 0.96831 0.88458 1.26792 0.91672 0.98938 1.00428 1.69829 1.23066 1.17093 1.33271 0.85358 0.80872 0.77267 0.77536 1.19388 1.18849 1.15984 1.23428 0.97762 1.01569 0.94734 0.85502 0.91963 0.91696 0.84204 0.88253 0.87187 0.87309 0.74113 0.86034 0.85830 0.86370 0.86920 0.89525 0.88076 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.37 -8.37 10.56 -51.41 -0.54 -8.91 16 3 C 0.48 11.63 7.48 71.24 0.53 12.16 16 4 O -0.53 -15.05 15.65 21.98 0.34 -14.71 16 5 C -0.11 -2.41 4.09 -11.01 -0.05 -2.46 16 6 C -0.11 -2.38 7.19 31.12 0.22 -2.15 16 7 C 0.13 3.40 4.48 45.51 0.20 3.60 16 8 N -1.09 -33.57 4.84 -167.21 -0.81 -34.38 16 9 S 2.72 111.89 4.92 -56.49 -0.28 111.61 16 10 O -1.00 -47.81 16.56 -128.00 -2.12 -49.93 16 11 O -1.01 -43.22 16.57 -128.00 -2.12 -45.34 16 12 C -0.79 -35.79 5.90 22.73 0.13 -35.66 16 13 C -0.02 -0.64 9.53 22.22 0.21 -0.43 16 14 C -0.25 -10.25 10.05 22.46 0.23 -10.03 16 15 C -0.08 -3.28 10.02 22.22 0.22 -3.06 16 16 C -0.18 -8.88 8.67 22.73 0.20 -8.68 16 17 C 0.17 8.14 5.55 -21.29 -0.12 8.02 16 18 C -0.47 -22.37 7.65 23.46 0.18 -22.19 16 19 H 0.10 4.22 5.78 -2.91 -0.02 4.20 16 20 C 0.04 1.84 5.23 85.26 0.45 2.29 16 21 N -0.81 -39.22 10.87 21.83 0.24 -38.98 16 22 Si 0.97 34.85 29.58 68.60 2.03 36.88 16 23 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 24 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 25 H -0.24 -7.76 7.11 99.48 0.71 -7.05 16 26 C -0.14 -3.41 7.43 31.12 0.23 -3.18 16 27 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.00 8.13 -2.38 -0.02 0.98 16 29 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 30 H 0.14 2.69 8.12 -2.39 -0.02 2.67 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 32 H 0.11 2.32 7.43 -2.39 -0.02 2.31 16 33 H 0.11 2.93 7.83 -2.39 -0.02 2.91 16 34 H 0.42 11.08 8.62 -96.75 -0.83 10.25 16 35 H 0.12 4.75 7.33 -2.91 -0.02 4.73 16 36 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.11 5.58 6.22 -2.91 -0.02 5.56 16 39 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 40 H 0.10 2.35 8.09 -2.39 -0.02 2.33 16 41 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -66.21 359.24 0.82 -65.39 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: 0.24 Total: 38.53 kcal Atomic # 6 Polarization: -64.00 SS G_CDS: 3.84 Total: -60.16 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -0.57 Total: -73.36 kcal Atomic # 8 Polarization: -114.45 SS G_CDS: -4.44 Total: -118.89 kcal Atomic # 14 Polarization: 34.85 SS G_CDS: 2.03 Total: 36.88 kcal Atomic # 16 Polarization: 111.89 SS G_CDS: -0.28 Total: 111.61 kcal Total: -66.21 0.82 -65.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867768826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.442 kcal (2) G-P(sol) polarization free energy of solvation -66.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds