Wall clock time and date at job start Tue Mar 31 2020 22:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45204 * 109.46950 * 2 1 4 4 C 1.34230 * 116.99311 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00485 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99305 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46543 * 179.97438 * 6 4 3 8 8 H 1.08992 * 109.47710 * 54.99919 * 7 6 4 9 9 C 1.50701 * 109.46790 * 175.00103 * 7 6 4 10 10 H 1.07997 * 119.99851 * 239.99402 * 9 7 6 11 11 C 1.37874 * 120.00158 * 59.99773 * 9 7 6 12 12 N 1.31516 * 120.00470 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00104 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47205 * 89.99632 * 13 11 9 15 15 H 1.48498 * 109.47543 * 210.00032 * 13 11 9 16 16 H 1.48508 * 109.47015 * 329.99694 * 13 11 9 17 17 O 1.42906 * 109.46900 * 294.99556 * 7 6 4 18 18 C 1.34995 * 116.99699 * 150.00379 * 17 7 6 19 19 O 1.21705 * 120.00166 * 0.02562 * 18 17 7 20 20 C 1.41292 * 119.99897 * 179.97438 * 18 17 7 21 21 C 1.35686 * 120.00110 * 187.23815 * 20 18 17 22 22 C 1.41648 * 119.99610 * 10.60286 * 21 20 18 23 23 C 1.37122 * 126.19110 * 224.24788 * 22 21 20 24 24 N 1.30930 * 113.84292 * 179.97438 * 23 22 21 25 25 C 1.29371 * 117.49722 * 0.02562 * 24 23 22 26 26 C 1.50705 * 124.67305 * 180.26377 * 25 24 23 27 27 S 1.70912 * 110.65843 * 0.02562 * 25 24 23 28 28 H 1.08996 * 109.47296 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47168 * 300.00646 * 1 2 3 30 30 H 1.09005 * 109.46853 * 59.99877 * 1 2 3 31 31 H 1.08996 * 109.46888 * 240.00156 * 2 1 3 32 32 H 1.08995 * 109.47115 * 119.99670 * 2 1 3 33 33 H 1.08997 * 109.47361 * 59.99906 * 6 4 3 34 34 H 1.08998 * 109.47060 * 299.99203 * 6 4 3 35 35 H 0.96996 * 120.00526 * 179.97438 * 12 11 9 36 36 H 1.07999 * 119.99654 * 7.24708 * 20 18 17 37 37 H 1.07997 * 119.99894 * 190.59340 * 21 20 18 38 38 H 1.08004 * 123.07771 * 0.02562 * 23 22 21 39 39 H 1.08996 * 109.46950 * 269.70024 * 26 25 24 40 40 H 1.09000 * 109.46839 * 29.70078 * 26 25 24 41 41 H 1.08994 * 109.47052 * 149.69832 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7806 2.2500 -0.8421 9 6 6.0244 4.2445 -0.1234 10 1 6.6592 4.4932 -0.9610 11 6 5.7408 5.1961 0.8331 12 7 4.9674 4.8935 1.8529 13 14 6.4539 6.9158 0.6800 14 1 5.5188 7.7724 -0.0928 15 1 6.6497 7.4930 2.0341 16 1 7.7602 6.8492 -0.0233 17 8 5.8945 2.2632 1.2208 18 6 7.0457 1.5595 1.1752 19 8 7.6536 1.4544 0.1262 20 6 7.5452 0.9459 2.3458 21 6 8.7713 0.3646 2.3367 22 6 9.6412 0.5635 1.2367 23 6 10.3870 -0.4012 0.6095 24 7 11.1091 0.0511 -0.3846 25 6 11.0363 1.3154 -0.6490 26 6 11.7907 2.0045 -1.7567 27 16 9.9616 2.0955 0.4270 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5852 3.4691 0.8904 34 1 3.5845 3.4700 -0.8896 35 1 4.7682 5.5628 2.5261 36 1 6.9511 0.9393 3.2477 37 1 9.0839 -0.2495 3.1683 38 1 10.3788 -1.4393 0.9076 39 1 12.7512 2.3549 -1.3789 40 1 11.9559 1.3033 -2.5747 41 1 11.2107 2.8537 -2.1177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870616065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:07 Heat of formation + Delta-G solvation = -104.521662 kcal Electronic energy + Delta-G solvation = -27444.118491 eV Core-core repulsion = 23417.303332 eV Total energy + Delta-G solvation = -4026.815160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.90017 -39.45732 -38.92609 -36.43598 -35.60555 -33.78718 -33.06811 -31.59940 -31.21900 -30.26269 -27.80306 -26.27482 -24.27775 -23.39460 -22.91572 -21.58077 -20.00283 -19.70465 -18.97774 -17.39613 -17.20532 -16.95182 -16.28201 -16.11435 -15.52501 -15.26431 -14.85008 -14.62459 -14.54552 -13.98195 -13.91882 -13.57290 -13.27700 -13.00548 -12.80384 -12.72422 -12.38323 -12.30663 -12.05555 -11.91050 -11.70623 -11.47246 -11.29514 -11.17182 -11.06000 -10.95715 -10.79273 -10.35891 -10.14992 -10.06198 -9.71038 -9.43012 -9.31271 -9.12791 -8.79343 -8.74152 -8.01109 -7.77731 -6.25524 -4.42761 0.49202 1.75187 2.08547 2.34164 3.00589 3.16170 3.22002 3.25351 3.28135 3.32650 4.03295 4.19110 4.25163 4.52732 5.07155 5.07823 5.14681 5.25782 5.33866 5.38010 5.47198 5.50165 5.57444 5.61463 5.74736 5.88642 5.89567 5.95669 6.00796 6.07477 6.34092 6.36718 6.43259 6.60136 6.65277 6.97273 7.02817 7.28325 7.66188 7.93991 7.99063 8.14295 8.50245 8.64119 9.10602 9.34500 10.76902 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009505 B = 0.004482 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.245367 B = 6245.164451 C = 8212.730951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.516 6.516 6 C -0.103 4.103 7 C 0.229 3.771 8 H 0.043 0.957 9 C -0.545 4.545 10 H 0.069 0.931 11 C 0.082 3.918 12 N -0.862 5.862 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.270 1.270 17 O -0.318 6.318 18 C 0.481 3.519 19 O -0.516 6.516 20 C -0.168 4.168 21 C -0.006 4.006 22 C -0.228 4.228 23 C 0.059 3.941 24 N -0.489 5.489 25 C -0.004 4.004 26 C -0.074 4.074 27 S 0.272 5.728 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.140 0.860 34 H 0.102 0.898 35 H 0.267 0.733 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.170 0.830 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.865 -5.829 0.613 6.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.284 6.284 4 C 0.301 3.699 5 O -0.404 6.404 6 C -0.140 4.140 7 C 0.176 3.824 8 H 0.061 0.939 9 C -0.582 4.582 10 H 0.087 0.913 11 C -0.125 4.125 12 N -0.498 5.498 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.195 1.195 17 O -0.232 6.232 18 C 0.329 3.671 19 O -0.411 6.411 20 C -0.191 4.191 21 C -0.026 4.026 22 C -0.350 4.350 23 C -0.098 4.098 24 N -0.205 5.205 25 C -0.275 4.275 26 C -0.134 4.134 27 S 0.533 5.467 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.187 0.813 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.171 -5.262 0.172 5.695 hybrid contribution 0.036 -0.305 0.294 0.425 sum 2.208 -5.567 0.467 6.007 Atomic orbital electron populations 1.21778 0.93283 1.02320 1.03331 1.22853 0.94858 0.81820 1.02018 1.86581 1.26149 1.30956 1.84736 1.24949 0.79466 0.94353 0.71116 1.90598 1.60230 1.43680 1.45904 1.21905 0.96894 0.88034 1.07180 1.19625 0.87985 0.92608 0.82224 0.93856 1.21374 1.32267 0.94404 1.10193 0.91326 1.25083 0.93910 0.98965 0.94507 1.69861 1.34570 1.34431 1.10946 0.86568 0.79969 0.83737 0.77727 1.20151 1.20861 1.19489 1.86309 1.36606 1.59228 1.41085 1.19680 0.81392 0.77043 0.89031 1.90856 1.57022 1.59790 1.33415 1.21817 0.97085 1.01463 0.98737 1.20489 0.91452 0.95481 0.95212 1.23796 1.07482 0.98088 1.05649 1.22186 0.94637 0.99948 0.93063 1.65886 1.23890 1.12891 1.17839 1.27185 1.02291 0.93887 1.04174 1.20348 0.98840 0.99757 0.94418 1.84099 1.30001 1.08658 1.23963 0.90849 0.91592 0.91704 0.91907 0.91766 0.84229 0.87999 0.92305 0.84200 0.83847 0.81333 0.90308 0.89887 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.29 37.16 0.38 -1.25 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.79 10.22 -39.26 -0.40 -7.19 16 4 C 0.46 9.82 7.84 36.01 0.28 10.10 16 5 O -0.52 -12.26 15.17 -24.05 -0.36 -12.63 16 6 C -0.10 -2.31 5.22 -27.88 -0.15 -2.46 16 7 C 0.23 5.77 1.62 -27.88 -0.05 5.73 16 8 H 0.04 1.16 6.93 -51.93 -0.36 0.80 16 9 C -0.55 -14.22 8.90 -34.44 -0.31 -14.52 16 10 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 11 C 0.08 2.08 5.24 -17.82 -0.09 1.99 16 12 N -0.86 -22.25 10.93 55.43 0.61 -21.65 16 13 Si 0.89 19.71 29.54 -169.99 -5.02 14.69 16 14 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 O -0.32 -8.04 8.37 -46.65 -0.39 -8.43 16 18 C 0.48 11.15 7.18 31.89 0.23 11.38 16 19 O -0.52 -12.55 10.88 -19.42 -0.21 -12.76 16 20 C -0.17 -3.09 9.96 -39.33 -0.39 -3.48 16 21 C -0.01 -0.09 9.93 -39.19 -0.39 -0.48 16 22 C -0.23 -3.96 4.65 -38.69 -0.18 -4.14 16 23 C 0.06 0.98 11.38 -18.34 -0.21 0.77 16 24 N -0.49 -8.62 10.50 -11.17 -0.12 -8.74 16 25 C 0.00 -0.06 7.37 -13.31 -0.10 -0.16 16 26 C -0.07 -0.93 10.46 36.01 0.38 -0.55 16 27 S 0.27 4.96 19.51 -107.50 -2.10 2.86 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 32 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.14 3.35 6.22 -51.93 -0.32 3.03 16 34 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 35 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 36 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16 37 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.17 2.26 8.06 -52.48 -0.42 1.84 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -31.96 369.37 -8.09 -40.05 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.30 Total: 4.21 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.36 Total: 4.03 kcal Atomic # 7 Polarization: -30.88 SS G_CDS: 0.49 Total: -30.39 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -1.37 Total: -41.01 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -2.10 Total: 2.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.96 -8.09 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870616065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.475 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds