Wall clock time and date at job start Tue Mar 31 2020 22:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45204 * 109.46950 * 2 1 4 4 C 1.34230 * 116.99311 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00485 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99305 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46543 * 179.97438 * 6 4 3 8 8 H 1.08992 * 109.47710 * 54.99919 * 7 6 4 9 9 C 1.50701 * 109.46790 * 175.00103 * 7 6 4 10 10 H 1.07997 * 119.99851 * 239.99402 * 9 7 6 11 11 C 1.37874 * 120.00158 * 59.99773 * 9 7 6 12 12 N 1.31516 * 120.00470 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00104 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47205 * 89.99632 * 13 11 9 15 15 H 1.48498 * 109.47543 * 210.00032 * 13 11 9 16 16 H 1.48508 * 109.47015 * 329.99694 * 13 11 9 17 17 O 1.42906 * 109.46900 * 294.99556 * 7 6 4 18 18 C 1.34995 * 116.99699 * 150.00379 * 17 7 6 19 19 O 1.21705 * 120.00166 * 0.02562 * 18 17 7 20 20 C 1.41292 * 119.99897 * 179.97438 * 18 17 7 21 21 C 1.35686 * 120.00110 * 187.23815 * 20 18 17 22 22 C 1.41648 * 119.99610 * 10.60286 * 21 20 18 23 23 C 1.37122 * 126.19110 * 224.24788 * 22 21 20 24 24 N 1.30930 * 113.84292 * 179.97438 * 23 22 21 25 25 C 1.29371 * 117.49722 * 0.02562 * 24 23 22 26 26 C 1.50705 * 124.67305 * 180.26377 * 25 24 23 27 27 S 1.70912 * 110.65843 * 0.02562 * 25 24 23 28 28 H 1.08996 * 109.47296 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47168 * 300.00646 * 1 2 3 30 30 H 1.09005 * 109.46853 * 59.99877 * 1 2 3 31 31 H 1.08996 * 109.46888 * 240.00156 * 2 1 3 32 32 H 1.08995 * 109.47115 * 119.99670 * 2 1 3 33 33 H 1.08997 * 109.47361 * 59.99906 * 6 4 3 34 34 H 1.08998 * 109.47060 * 299.99203 * 6 4 3 35 35 H 0.96996 * 120.00526 * 179.97438 * 12 11 9 36 36 H 1.07999 * 119.99654 * 7.24708 * 20 18 17 37 37 H 1.07997 * 119.99894 * 190.59340 * 21 20 18 38 38 H 1.08004 * 123.07771 * 0.02562 * 23 22 21 39 39 H 1.08996 * 109.46950 * 269.70024 * 26 25 24 40 40 H 1.09000 * 109.46839 * 29.70078 * 26 25 24 41 41 H 1.08994 * 109.47052 * 149.69832 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7806 2.2500 -0.8421 9 6 6.0244 4.2445 -0.1234 10 1 6.6592 4.4932 -0.9610 11 6 5.7408 5.1961 0.8331 12 7 4.9674 4.8935 1.8529 13 14 6.4539 6.9158 0.6800 14 1 5.5188 7.7724 -0.0928 15 1 6.6497 7.4930 2.0341 16 1 7.7602 6.8492 -0.0233 17 8 5.8945 2.2632 1.2208 18 6 7.0457 1.5595 1.1752 19 8 7.6536 1.4544 0.1262 20 6 7.5452 0.9459 2.3458 21 6 8.7713 0.3646 2.3367 22 6 9.6412 0.5635 1.2367 23 6 10.3870 -0.4012 0.6095 24 7 11.1091 0.0511 -0.3846 25 6 11.0363 1.3154 -0.6490 26 6 11.7907 2.0045 -1.7567 27 16 9.9616 2.0955 0.4270 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5852 3.4691 0.8904 34 1 3.5845 3.4700 -0.8896 35 1 4.7682 5.5628 2.5261 36 1 6.9511 0.9393 3.2477 37 1 9.0839 -0.2495 3.1683 38 1 10.3788 -1.4393 0.9076 39 1 12.7512 2.3549 -1.3789 40 1 11.9559 1.3033 -2.5747 41 1 11.2107 2.8537 -2.1177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870616065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:06 Heat of formation + Delta-G solvation = -122.172872 kcal Electronic energy + Delta-G solvation = -27444.883905 eV Core-core repulsion = 23417.303332 eV Total energy + Delta-G solvation = -4027.580574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58953 -41.03909 -40.36582 -38.09290 -37.29064 -35.25789 -34.97552 -32.92136 -32.44867 -31.91368 -29.15428 -28.13936 -25.72372 -24.82001 -24.21041 -23.14491 -21.60126 -21.31409 -20.42061 -19.13496 -18.74848 -18.51171 -17.96189 -17.59220 -17.25247 -16.89340 -16.56605 -16.29096 -15.87687 -15.48826 -15.30171 -14.85419 -14.62123 -14.50408 -14.28829 -13.98218 -13.69973 -13.57867 -13.40840 -13.35687 -13.04494 -12.95224 -12.85027 -12.78671 -12.61257 -12.52308 -12.47487 -12.13777 -11.56268 -11.53879 -11.48237 -11.34705 -10.84631 -10.74985 -10.65415 -10.45643 -9.40726 -9.20452 -8.19663 -6.44622 -0.87213 0.42470 0.73204 0.99446 1.27995 1.41448 1.44459 1.53723 1.80926 1.87760 2.37029 2.44324 2.54398 3.16223 3.33176 3.92807 3.97159 3.99383 4.11826 4.15840 4.21151 4.33572 4.37125 4.49858 4.56264 4.60240 4.63019 4.63254 4.85609 4.92089 4.94965 4.99505 5.03588 5.12885 5.27676 5.32942 5.44441 5.50402 5.67598 5.99369 6.18713 6.62203 6.80044 6.85218 7.26071 7.40512 8.82558 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009505 B = 0.004482 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.245367 B = 6245.164451 C = 8212.730951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.364 6.364 4 C 0.464 3.536 5 O -0.543 6.543 6 C -0.097 4.097 7 C 0.233 3.767 8 H 0.013 0.987 9 C -0.567 4.567 10 H 0.053 0.947 11 C 0.050 3.950 12 N -0.879 5.879 13 Si 0.950 3.050 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.275 1.275 17 O -0.337 6.337 18 C 0.469 3.531 19 O -0.539 6.539 20 C -0.211 4.211 21 C 0.038 3.962 22 C -0.248 4.248 23 C 0.066 3.934 24 N -0.507 5.507 25 C 0.010 3.990 26 C -0.076 4.076 27 S 0.207 5.793 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.271 0.729 36 H 0.159 0.841 37 H 0.200 0.800 38 H 0.203 0.797 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.164 -6.602 1.210 7.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.282 6.282 4 C 0.310 3.690 5 O -0.433 6.433 6 C -0.134 4.134 7 C 0.179 3.821 8 H 0.031 0.969 9 C -0.604 4.604 10 H 0.072 0.928 11 C -0.155 4.155 12 N -0.514 5.514 13 Si 0.775 3.225 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.199 1.199 17 O -0.252 6.252 18 C 0.318 3.682 19 O -0.435 6.435 20 C -0.233 4.233 21 C 0.018 3.982 22 C -0.370 4.370 23 C -0.091 4.091 24 N -0.223 5.223 25 C -0.262 4.262 26 C -0.136 4.136 27 S 0.468 5.532 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.080 0.920 36 H 0.177 0.823 37 H 0.216 0.784 38 H 0.220 0.780 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.440 -6.044 0.776 6.564 hybrid contribution 0.038 -0.205 0.026 0.210 sum 2.478 -6.248 0.802 6.769 Atomic orbital electron populations 1.21808 0.89779 1.04464 1.03753 1.23290 0.97542 0.79677 1.02040 1.86551 1.24079 1.33557 1.83976 1.24571 0.80394 0.93462 0.70585 1.90580 1.61156 1.44291 1.47276 1.21705 0.95546 0.89017 1.07143 1.19451 0.89377 0.91683 0.81545 0.96866 1.21412 1.33050 0.95469 1.10495 0.92834 1.25639 0.94012 1.01923 0.93948 1.69945 1.34828 1.35463 1.11175 0.85683 0.79172 0.79784 0.77879 1.18943 1.20233 1.19943 1.86286 1.37987 1.60142 1.40748 1.20540 0.80550 0.76636 0.90498 1.90839 1.57282 1.60774 1.34633 1.21848 0.99107 1.04414 0.97978 1.21081 0.89244 0.92584 0.95312 1.24032 1.08765 0.97476 1.06752 1.22758 0.93066 1.01197 0.92082 1.65989 1.24730 1.13063 1.18568 1.27839 1.00982 0.93581 1.03764 1.20555 0.99678 0.99865 0.93502 1.84356 1.31941 1.11031 1.25887 0.87788 0.91317 0.91125 0.91791 0.91985 0.85420 0.86737 0.91951 0.82342 0.78361 0.78035 0.87540 0.88840 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 10.29 71.98 0.74 -2.01 16 2 C 0.05 1.38 6.19 71.98 0.45 1.83 16 3 O -0.36 -13.50 10.22 -51.42 -0.53 -14.03 16 4 C 0.46 20.50 7.84 71.24 0.56 21.06 16 5 O -0.54 -26.61 15.17 27.04 0.41 -26.20 16 6 C -0.10 -4.52 5.22 29.85 0.16 -4.36 16 7 C 0.23 12.34 1.62 29.85 0.05 12.39 16 8 H 0.01 0.76 6.93 -2.39 -0.02 0.74 16 9 C -0.57 -30.79 8.90 25.60 0.23 -30.57 16 10 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 11 C 0.05 2.58 5.24 84.65 0.44 3.02 16 12 N -0.88 -46.00 10.93 21.45 0.23 -45.76 16 13 Si 0.95 40.75 29.54 68.60 2.03 42.78 16 14 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 15 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 O -0.34 -17.74 8.37 -54.03 -0.45 -18.20 16 18 C 0.47 22.47 7.18 68.57 0.49 22.96 16 19 O -0.54 -27.33 10.88 19.16 0.21 -27.13 16 20 C -0.21 -7.72 9.96 22.43 0.22 -7.50 16 21 C 0.04 1.10 9.93 22.52 0.22 1.32 16 22 C -0.25 -8.35 4.65 22.85 0.11 -8.24 16 23 C 0.07 2.05 11.38 84.56 0.96 3.01 16 24 N -0.51 -17.15 10.50 -189.25 -1.99 -19.13 16 25 C 0.01 0.34 7.37 88.47 0.65 0.99 16 26 C -0.08 -1.82 10.46 71.24 0.74 -1.08 16 27 S 0.21 7.67 19.51 -56.49 -1.10 6.57 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.06 1.83 8.13 -2.39 -0.02 1.81 16 32 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 33 H 0.13 6.33 6.22 -2.39 -0.01 6.31 16 34 H 0.11 4.90 8.14 -2.39 -0.02 4.88 16 35 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 36 H 0.16 5.03 8.06 -2.91 -0.02 5.00 16 37 H 0.20 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.20 4.72 8.06 -2.91 -0.02 4.70 16 39 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -72.15 369.37 5.89 -66.27 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 1.05 Total: 22.01 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 6.03 Total: 12.82 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -1.75 Total: -64.90 kcal Atomic # 8 Polarization: -85.19 SS G_CDS: -0.36 Total: -85.55 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Atomic # 16 Polarization: 7.67 SS G_CDS: -1.10 Total: 6.57 kcal Total: -72.15 5.89 -66.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870616065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.907 kcal (2) G-P(sol) polarization free energy of solvation -72.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds