Wall clock time and date at job start Tue Mar 31 2020 22:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.47436 * 2 1 4 4 C 1.34225 * 117.00135 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00425 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99866 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.47192 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47366 * 53.22533 * 7 6 4 9 9 C 1.50698 * 109.47444 * 173.22640 * 7 6 4 10 10 H 1.07995 * 120.00473 * 238.43587 * 9 7 6 11 11 C 1.37876 * 119.99645 * 58.43622 * 9 7 6 12 12 N 1.31519 * 120.00433 * 6.70701 * 11 9 7 13 13 Si 1.86809 * 119.99927 * 186.71100 * 11 9 7 14 14 H 1.48504 * 109.47131 * 94.99335 * 13 11 9 15 15 H 1.48496 * 109.47236 * 214.99448 * 13 11 9 16 16 H 1.48501 * 109.46756 * 334.99643 * 13 11 9 17 17 O 1.42908 * 109.46865 * 293.22699 * 7 6 4 18 18 C 1.34987 * 117.00318 * 149.99937 * 17 7 6 19 19 O 1.21710 * 119.99832 * 359.97438 * 18 17 7 20 20 C 1.41283 * 120.00522 * 180.02562 * 18 17 7 21 21 C 1.35683 * 120.00587 * 173.50588 * 20 18 17 22 22 C 1.41651 * 119.99941 * 350.90990 * 21 20 18 23 23 S 1.76216 * 126.19081 * 306.63221 * 22 21 20 24 24 C 1.70920 * 90.38857 * 179.73366 * 23 22 21 25 25 N 1.29365 * 110.65712 * 0.02562 * 24 23 22 26 26 C 1.30933 * 117.49889 * 359.97438 * 25 24 23 27 27 C 1.50694 * 123.08264 * 180.02562 * 26 25 24 28 28 H 1.08995 * 109.46970 * 60.00107 * 1 2 3 29 29 H 1.09002 * 109.47170 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46874 * 299.99823 * 1 2 3 31 31 H 1.09001 * 109.47141 * 239.99726 * 2 1 3 32 32 H 1.09005 * 109.46800 * 120.00419 * 2 1 3 33 33 H 1.08995 * 109.47650 * 59.99499 * 6 4 3 34 34 H 1.09009 * 109.47205 * 299.99436 * 6 4 3 35 35 H 0.97001 * 119.99955 * 180.02562 * 12 11 9 36 36 H 1.08007 * 119.99417 * 353.50071 * 20 18 17 37 37 H 1.07996 * 120.00299 * 170.91366 * 21 20 18 38 38 H 1.07996 * 124.66704 * 180.02562 * 24 23 22 39 39 H 1.09004 * 109.46839 * 269.97961 * 27 26 25 40 40 H 1.09003 * 109.47306 * 29.97247 * 27 26 25 41 41 H 1.08998 * 109.47488 * 149.97754 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4487 2.8572 -0.0014 8 1 5.7787 2.2244 -0.8253 9 6 6.0241 4.2400 -0.1684 10 1 6.6771 4.4562 -1.0010 11 6 5.7168 5.2290 0.7417 12 7 5.0313 4.9359 1.8251 13 14 6.2742 6.9856 0.4359 14 1 5.1807 7.7443 -0.2229 15 1 6.6135 7.6297 1.7302 16 1 7.4713 6.9791 -0.4427 17 8 5.8977 2.3007 1.2359 18 6 7.0486 1.5959 1.2092 19 8 7.6536 1.4580 0.1621 20 6 7.5505 1.0174 2.3964 21 6 8.6330 0.2007 2.3483 22 6 9.1427 -0.2267 1.0977 23 16 8.2255 -1.0101 -0.1870 24 6 9.6306 -1.0912 -1.1567 25 7 10.6428 -0.5756 -0.5375 26 6 10.4378 -0.1008 0.6653 27 6 11.5255 0.5270 1.4982 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5853 3.4690 0.8904 34 1 3.5845 3.4700 -0.8896 35 1 4.8148 5.6318 2.4652 36 1 7.0725 1.2253 3.3424 37 1 9.1059 -0.1236 3.2634 38 1 9.6683 -1.5146 -2.1495 39 1 12.0110 -0.2410 2.1003 40 1 12.2610 0.9940 0.8432 41 1 11.0913 1.2820 2.1536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870617534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:12 Heat of formation + Delta-G solvation = -105.089088 kcal Electronic energy + Delta-G solvation = -27569.182632 eV Core-core repulsion = 23542.342867 eV Total energy + Delta-G solvation = -4026.839765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.93029 -39.60453 -38.95069 -36.41573 -35.59070 -33.75616 -33.04434 -31.61962 -30.96548 -30.25563 -27.47724 -26.24983 -24.76326 -23.62026 -23.00656 -21.58911 -19.97416 -19.61956 -18.68095 -17.47086 -17.26704 -16.95691 -16.25763 -16.14962 -15.62863 -15.45693 -14.74844 -14.58374 -14.35751 -14.23683 -13.91197 -13.40470 -13.20713 -13.05730 -12.78818 -12.55359 -12.40749 -12.27493 -12.26154 -11.89553 -11.75146 -11.46052 -11.31088 -11.16229 -11.03119 -10.91002 -10.81643 -10.29116 -10.17356 -10.04465 -9.74182 -9.41113 -9.34845 -9.14063 -8.80522 -8.68911 -8.10942 -7.95488 -6.24300 -4.40397 0.56398 1.63220 2.02390 2.30485 2.97240 3.13721 3.17617 3.27057 3.28482 3.33441 4.02532 4.20454 4.27785 4.55841 5.05813 5.07398 5.12864 5.21337 5.35791 5.36492 5.42174 5.44579 5.58003 5.72388 5.86680 5.87336 5.89573 5.98707 6.03750 6.05646 6.31319 6.33964 6.42454 6.58784 6.63403 6.95055 7.02097 7.25157 7.68609 7.95336 8.01243 8.09399 8.47461 8.66243 9.13535 9.36194 10.78386 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.008392 B = 0.004935 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3335.691664 B = 5672.303780 C = 8170.942448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.515 6.515 6 C -0.101 4.101 7 C 0.230 3.770 8 H 0.045 0.955 9 C -0.547 4.547 10 H 0.068 0.932 11 C 0.081 3.919 12 N -0.860 5.860 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.271 1.271 17 O -0.319 6.319 18 C 0.482 3.518 19 O -0.515 6.515 20 C -0.154 4.154 21 C -0.014 4.014 22 C -0.199 4.199 23 S 0.219 5.781 24 C -0.015 4.015 25 N -0.476 5.476 26 C 0.076 3.924 27 C -0.074 4.074 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.266 0.734 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.190 0.810 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.732 -10.770 1.330 10.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.302 3.698 5 O -0.403 6.403 6 C -0.139 4.139 7 C 0.176 3.824 8 H 0.063 0.937 9 C -0.584 4.584 10 H 0.086 0.914 11 C -0.125 4.125 12 N -0.495 5.495 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.196 1.196 17 O -0.233 6.233 18 C 0.328 3.672 19 O -0.409 6.409 20 C -0.177 4.177 21 C -0.035 4.035 22 C -0.321 4.321 23 S 0.478 5.522 24 C -0.308 4.308 25 N -0.191 5.191 26 C -0.061 4.061 27 C -0.133 4.133 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.207 0.793 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.038 -11.408 0.628 11.472 hybrid contribution 0.794 1.388 0.261 1.620 sum -0.244 -10.020 0.889 10.062 Atomic orbital electron populations 1.21780 0.93292 1.02333 1.03340 1.22857 0.94858 0.81773 1.02032 1.86577 1.26111 1.31007 1.84708 1.24888 0.79489 0.94295 0.71138 1.90588 1.60209 1.43617 1.45880 1.21837 0.96961 0.88118 1.06948 1.19634 0.87836 0.93088 0.81823 0.93744 1.21398 1.31378 0.93613 1.12038 0.91391 1.25099 0.93927 0.99343 0.94179 1.69957 1.37182 1.33318 1.09071 0.86533 0.79371 0.83957 0.78004 1.20172 1.20909 1.19598 1.86317 1.36526 1.60075 1.40378 1.19599 0.81395 0.77488 0.88679 1.90871 1.58493 1.57867 1.33687 1.21900 0.97570 0.99049 0.99197 1.20476 0.93729 0.94500 0.94796 1.23453 0.96696 1.11191 1.00710 1.83889 1.13039 1.47783 1.07512 1.28192 0.92199 1.05355 1.05039 1.65749 1.32621 1.12666 1.08024 1.20737 0.92861 1.00907 0.91568 1.20280 0.95378 0.99689 0.97950 0.91698 0.90834 0.91600 0.91858 0.91751 0.84723 0.87885 0.92409 0.84105 0.83856 0.79293 0.91067 0.90807 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 37.16 0.38 -1.19 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.37 -6.61 10.22 -39.24 -0.40 -7.01 16 4 C 0.46 9.59 7.85 36.01 0.28 9.87 16 5 O -0.52 -11.74 15.21 -23.60 -0.36 -12.10 16 6 C -0.10 -2.26 5.17 -27.88 -0.14 -2.41 16 7 C 0.23 5.82 1.61 -27.88 -0.04 5.78 16 8 H 0.04 1.18 6.86 -51.93 -0.36 0.83 16 9 C -0.55 -14.72 8.90 -34.44 -0.31 -15.03 16 10 H 0.07 1.88 7.82 -52.49 -0.41 1.47 16 11 C 0.08 2.11 5.20 -17.82 -0.09 2.02 16 12 N -0.86 -22.56 11.05 55.43 0.61 -21.94 16 13 Si 0.89 20.29 29.54 -169.99 -5.02 15.26 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 O -0.32 -8.07 8.42 -46.16 -0.39 -8.46 16 18 C 0.48 11.17 7.33 31.89 0.23 11.41 16 19 O -0.52 -12.63 11.32 -19.43 -0.22 -12.85 16 20 C -0.15 -2.81 9.98 -39.34 -0.39 -3.21 16 21 C -0.01 -0.22 9.11 -39.19 -0.36 -0.58 16 22 C -0.20 -3.41 4.30 -38.69 -0.17 -3.58 16 23 S 0.22 3.72 20.37 -107.50 -2.19 1.53 16 24 C -0.01 -0.23 12.20 51.72 0.63 0.40 16 25 N -0.48 -8.33 10.49 -11.22 -0.12 -8.44 16 26 C 0.08 1.28 6.85 -83.38 -0.57 0.71 16 27 C -0.07 -0.98 10.09 36.00 0.36 -0.62 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.14 3.21 6.42 -51.93 -0.33 2.88 16 34 H 0.10 2.12 8.14 -51.92 -0.42 1.70 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.14 2.24 8.06 -52.48 -0.42 1.82 16 37 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.19 2.29 8.06 -52.49 -0.42 1.87 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.94 7.65 -51.93 -0.40 0.54 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -32.54 369.35 -7.75 -40.30 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.28 Total: 3.50 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 0.05 Total: 4.65 kcal Atomic # 7 Polarization: -30.88 SS G_CDS: 0.49 Total: -30.39 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.37 Total: -40.42 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -2.19 Total: 1.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.54 -7.75 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870617534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.793 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds