Wall clock time and date at job start Tue Mar 31 2020 22:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3 8 8 H 1.08999 * 109.47456 * 54.99697 * 7 6 4 9 9 C 1.50695 * 109.47310 * 174.99936 * 7 6 4 10 10 H 1.08005 * 120.00302 * 239.99738 * 9 7 6 11 11 C 1.37884 * 120.00111 * 59.99751 * 9 7 6 12 12 N 1.31510 * 119.99863 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00101 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47176 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.46847 * 120.00012 * 13 11 9 16 16 H 1.48489 * 109.47321 * 240.00089 * 13 11 9 17 17 O 1.45203 * 109.46931 * 294.99585 * 7 6 4 18 18 C 1.34875 * 116.99831 * 149.99659 * 17 7 6 19 19 O 1.21610 * 120.00113 * 0.02562 * 18 17 7 20 20 C 1.46501 * 120.00072 * 180.02562 * 18 17 7 21 21 S 1.76213 * 126.17731 * 359.69403 * 20 18 17 22 22 C 1.70923 * 90.37119 * 179.97438 * 21 20 18 23 23 N 1.29397 * 110.58390 * 0.31714 * 22 21 20 24 24 C 1.30907 * 117.47008 * 359.75086 * 23 22 21 25 25 C 1.50699 * 123.03740 * 179.97438 * 24 23 22 26 26 C 1.53000 * 117.49607 * 8.64215 * 25 24 23 27 27 C 1.53003 * 60.00165 * 252.51327 * 26 25 24 28 28 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 29 29 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 30 30 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 34 34 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 35 35 H 0.96998 * 120.00236 * 180.02562 * 12 11 9 36 36 H 1.07995 * 124.70795 * 180.02562 * 22 21 20 37 37 H 1.08997 * 115.55086 * 154.35487 * 25 24 23 38 38 H 1.09003 * 117.50008 * 359.97438 * 26 25 24 39 39 H 1.09003 * 117.50006 * 145.02712 * 26 25 24 40 40 H 1.08999 * 117.49823 * 252.51103 * 27 26 25 41 41 H 1.09000 * 117.51512 * 107.48034 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4485 2.8573 0.0107 8 1 5.7835 2.2522 -0.8318 9 6 6.0247 4.2448 -0.1070 10 1 6.6624 4.4958 -0.9418 11 6 5.7377 5.1940 0.8510 12 7 4.9616 4.8883 1.8678 13 14 6.4525 6.9137 0.7056 14 1 7.2871 7.0009 -0.5196 15 1 5.3482 7.9033 0.6231 16 1 7.2896 7.2043 1.8971 17 8 5.8973 2.2506 1.2512 18 6 7.0475 1.5476 1.2079 19 8 7.6586 1.4452 0.1615 20 6 7.5608 0.9072 2.4215 21 16 6.8161 0.9559 4.0178 22 6 8.0810 -0.0045 4.6494 23 7 8.9389 -0.2925 3.7245 24 6 8.7077 0.1689 2.5215 25 6 9.6228 -0.0894 1.3524 26 6 10.7596 -1.0935 1.5537 27 6 11.0673 0.4026 1.4639 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.5878 3.4722 -0.8839 34 1 3.5816 3.4669 0.8960 35 1 4.7594 5.5562 2.5415 36 1 8.1564 -0.3226 5.6787 37 1 9.1526 -0.0513 0.3699 38 1 10.8458 -1.5668 2.5318 39 1 11.0375 -1.7163 0.7034 40 1 11.5475 0.7639 0.5546 41 1 11.3555 0.9134 2.3827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870618835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:54 Heat of formation + Delta-G solvation = -104.353827 kcal Electronic energy + Delta-G solvation = -27516.738850 eV Core-core repulsion = 23489.930968 eV Total energy + Delta-G solvation = -4026.807882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.06666 -39.80862 -38.63271 -36.28459 -36.17535 -35.22984 -33.12865 -31.62077 -30.65864 -30.02425 -26.46015 -25.92956 -23.45161 -22.92619 -22.15909 -22.08176 -21.16463 -19.83202 -18.79233 -17.90021 -17.23306 -16.55388 -16.35354 -16.11051 -15.72697 -15.43623 -15.22226 -14.71291 -14.61744 -14.15983 -14.05187 -13.87348 -13.67473 -13.00379 -12.76524 -12.39561 -12.14154 -12.01049 -11.90626 -11.56602 -11.32903 -11.31023 -11.23511 -11.08516 -10.95446 -10.80699 -10.54117 -10.29919 -10.17154 -10.16108 -9.75181 -9.67715 -9.51306 -9.30327 -9.20689 -8.83840 -8.78939 -8.41651 -6.30294 -4.47475 0.52658 1.52666 1.95779 2.67858 2.96858 3.14410 3.25003 3.28162 3.31462 3.73288 3.82371 4.18449 4.22683 4.34442 4.88947 5.02630 5.06482 5.10132 5.13063 5.27762 5.36116 5.40512 5.45067 5.68391 5.83075 5.84414 5.87691 5.93439 6.01286 6.06207 6.28866 6.29583 6.35582 6.51891 6.55604 6.84841 6.96414 7.21681 7.61777 7.78208 7.86661 7.90466 8.46689 8.59881 8.97113 9.29118 10.72146 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.008031 B = 0.004965 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3485.478225 B = 5638.667041 C = 7560.965391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.456 3.544 5 O -0.516 6.516 6 C -0.102 4.102 7 C 0.232 3.768 8 H 0.048 0.952 9 C -0.546 4.546 10 H 0.072 0.928 11 C 0.082 3.918 12 N -0.859 5.859 13 Si 0.897 3.103 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.281 1.281 17 O -0.325 6.325 18 C 0.543 3.457 19 O -0.509 6.509 20 C -0.252 4.252 21 S 0.226 5.774 22 C -0.004 4.004 23 N -0.474 5.474 24 C 0.156 3.844 25 C -0.090 4.090 26 C -0.166 4.166 27 C -0.158 4.158 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.268 0.732 36 H 0.200 0.800 37 H 0.143 0.857 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 -8.288 3.827 9.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.283 6.283 4 C 0.301 3.699 5 O -0.404 6.404 6 C -0.139 4.139 7 C 0.179 3.821 8 H 0.066 0.934 9 C -0.582 4.582 10 H 0.090 0.910 11 C -0.125 4.125 12 N -0.495 5.495 13 Si 0.724 3.276 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.206 1.206 17 O -0.239 6.239 18 C 0.386 3.614 19 O -0.402 6.402 20 C -0.375 4.375 21 S 0.483 5.517 22 C -0.298 4.298 23 N -0.189 5.189 24 C 0.018 3.982 25 C -0.111 4.111 26 C -0.203 4.203 27 C -0.196 4.196 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.159 0.841 35 H 0.078 0.922 36 H 0.217 0.783 37 H 0.160 0.840 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.757 -8.397 4.353 9.621 hybrid contribution 0.832 0.641 -0.518 1.171 sum -0.925 -7.756 3.835 8.702 Atomic orbital electron populations 1.21775 0.93255 1.02340 1.03345 1.22861 0.94877 0.81759 1.02053 1.86576 1.26056 1.31006 1.84699 1.24919 0.79529 0.94308 0.71156 1.90604 1.60246 1.43669 1.45897 1.21877 0.96528 0.88161 1.07384 1.20118 0.88161 0.92569 0.81234 0.93370 1.21416 1.32158 0.94155 1.10492 0.91008 1.25111 0.93784 0.99190 0.94433 1.69864 1.34180 1.34537 1.10919 0.86446 0.79240 0.83333 0.78602 1.19337 1.20449 1.20634 1.86708 1.35698 1.59280 1.42244 1.19009 0.81006 0.76018 0.85391 1.90701 1.58777 1.59672 1.31010 1.25173 1.02387 1.11536 0.98385 1.84301 1.23897 1.43783 0.99730 1.28625 0.95697 1.01784 1.03664 1.65897 1.29671 1.23477 0.99807 1.19928 0.92593 0.93865 0.91780 1.20837 0.88449 1.05487 0.96294 1.22959 1.01748 0.92205 1.03384 1.22895 0.96390 0.97051 1.03241 0.91585 0.91687 0.90837 0.91855 0.91758 0.87671 0.84117 0.92234 0.78286 0.83992 0.87994 0.88693 0.88257 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 37.15 0.38 -1.21 16 2 C 0.06 0.85 6.19 37.15 0.23 1.08 16 3 O -0.37 -6.64 10.22 -39.26 -0.40 -7.05 16 4 C 0.46 9.64 7.84 36.00 0.28 9.92 16 5 O -0.52 -12.07 15.17 -23.95 -0.36 -12.44 16 6 C -0.10 -2.26 5.23 -27.89 -0.15 -2.41 16 7 C 0.23 5.84 1.65 -27.89 -0.05 5.79 16 8 H 0.05 1.27 6.98 -51.93 -0.36 0.91 16 9 C -0.55 -14.37 8.92 -34.44 -0.31 -14.68 16 10 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 11 C 0.08 2.09 5.25 -17.82 -0.09 2.00 16 12 N -0.86 -22.03 10.93 55.43 0.61 -21.43 16 13 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 O -0.32 -8.27 8.42 -46.21 -0.39 -8.66 16 18 C 0.54 13.27 7.89 34.06 0.27 13.54 16 19 O -0.51 -13.03 13.64 -19.35 -0.26 -13.30 16 20 C -0.25 -5.22 6.52 -36.79 -0.24 -5.46 16 21 S 0.23 3.73 23.09 -107.50 -2.48 1.25 16 22 C 0.00 -0.05 12.21 51.74 0.63 0.58 16 23 N -0.47 -7.85 9.81 -11.30 -0.11 -7.96 16 24 C 0.16 2.94 6.45 -83.52 -0.54 2.40 16 25 C -0.09 -1.58 5.46 -91.77 -0.50 -2.08 16 26 C -0.17 -2.30 10.09 -26.73 -0.27 -2.57 16 27 C -0.16 -2.34 10.23 -26.73 -0.27 -2.61 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 32 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 33 H 0.11 2.12 8.14 -51.93 -0.42 1.69 16 34 H 0.14 3.32 6.22 -51.93 -0.32 3.00 16 35 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 36 H 0.20 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.14 2.74 6.22 -51.93 -0.32 2.42 16 38 H 0.10 1.41 7.75 -51.93 -0.40 1.01 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -30.94 370.96 -8.64 -39.58 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.18 Total: 5.17 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.62 Total: 4.29 kcal Atomic # 7 Polarization: -29.88 SS G_CDS: 0.50 Total: -29.39 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -1.42 Total: -41.44 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -2.48 Total: 1.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.94 -8.64 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870618835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.773 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds