Wall clock time and date at job start Tue Mar 31 2020 22:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3 8 8 H 1.08999 * 109.47456 * 54.99697 * 7 6 4 9 9 C 1.50695 * 109.47310 * 174.99936 * 7 6 4 10 10 H 1.08005 * 120.00302 * 239.99738 * 9 7 6 11 11 C 1.37884 * 120.00111 * 59.99751 * 9 7 6 12 12 N 1.31510 * 119.99863 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99841 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47365 * 60.00472 * 13 11 9 15 15 H 1.48505 * 109.46871 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47303 * 299.99668 * 13 11 9 17 17 O 1.45203 * 109.46931 * 294.99585 * 7 6 4 18 18 C 1.34879 * 116.99753 * 150.00098 * 17 7 6 19 19 O 1.21611 * 120.00501 * 359.97438 * 18 17 7 20 20 C 1.46501 * 119.99839 * 180.02562 * 18 17 7 21 21 C 1.36763 * 126.18013 * 359.68414 * 20 18 17 22 22 N 1.30910 * 113.93217 * 179.78886 * 21 20 18 23 23 C 1.29394 * 117.46701 * 0.52532 * 22 21 20 24 24 C 1.50700 * 124.70690 * 179.72475 * 23 22 21 25 25 C 1.53005 * 117.49753 * 8.59674 * 24 23 22 26 26 C 1.52999 * 60.00001 * 252.51066 * 25 24 23 27 27 S 1.70926 * 110.58821 * 359.70892 * 23 22 21 28 28 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 29 29 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 34 34 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 35 35 H 0.96998 * 120.00236 * 180.02562 * 12 11 9 36 36 H 1.07998 * 123.03103 * 0.02562 * 21 20 18 37 37 H 1.08997 * 115.55369 * 154.30967 * 24 23 22 38 38 H 1.09001 * 117.49688 * 0.02562 * 25 24 23 39 39 H 1.09004 * 117.49115 * 145.01722 * 25 24 23 40 40 H 1.09003 * 117.49848 * 252.50476 * 26 25 24 41 41 H 1.08998 * 117.51448 * 107.48448 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4485 2.8573 0.0107 8 1 5.7835 2.2522 -0.8318 9 6 6.0247 4.2448 -0.1070 10 1 6.6624 4.4958 -0.9418 11 6 5.7377 5.1940 0.8510 12 7 4.9616 4.8883 1.8678 13 14 6.4513 6.9141 0.7047 14 1 5.9918 7.5345 -0.5638 15 1 5.9957 7.7384 1.8529 16 1 7.9343 6.8368 0.7093 17 8 5.8973 2.2506 1.2512 18 6 7.0476 1.5476 1.2079 19 8 7.6583 1.4445 0.1613 20 6 7.5608 0.9073 2.4215 21 6 6.9829 0.9452 3.6605 22 7 7.6453 0.2841 4.5758 23 6 8.7413 -0.3008 4.2138 24 6 9.6322 -1.0978 5.1316 25 6 9.1121 -1.3932 6.5399 26 6 10.2339 -0.3728 6.3371 27 16 9.0383 -0.0444 2.5502 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.5878 3.4722 -0.8839 34 1 3.5816 3.4669 0.8960 35 1 4.7594 5.5562 2.5415 36 1 6.0612 1.4698 3.8643 37 1 10.2408 -1.8623 4.6489 38 1 8.1254 -1.0114 6.8024 39 1 9.3785 -2.3525 6.9837 40 1 11.2383 -0.6606 6.6477 41 1 9.9858 0.6807 6.4662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870619333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:57 Heat of formation + Delta-G solvation = -106.870356 kcal Electronic energy + Delta-G solvation = -26918.308415 eV Core-core repulsion = 22891.391408 eV Total energy + Delta-G solvation = -4026.917007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.89825 -39.71653 -38.75541 -36.90042 -36.20048 -35.23640 -33.13244 -31.61054 -30.66420 -29.86599 -26.58704 -26.19487 -23.40297 -22.85490 -22.49935 -22.14651 -21.14304 -19.85100 -18.94916 -17.94004 -17.24824 -16.85878 -16.31881 -16.12212 -15.75366 -15.46819 -15.25452 -14.73743 -14.61090 -14.37406 -13.95940 -13.86006 -13.71247 -13.00357 -12.76236 -12.41493 -12.32893 -12.12691 -11.88886 -11.66685 -11.56831 -11.30110 -11.25795 -11.04730 -11.00352 -10.89052 -10.79348 -10.75073 -10.33379 -10.15954 -9.88657 -9.73457 -9.50777 -9.28574 -9.20475 -8.85513 -8.78221 -8.52606 -6.29907 -4.47410 0.48436 1.31150 1.89231 2.72390 2.98048 3.18408 3.24824 3.26850 3.31657 3.68646 3.83430 3.94228 4.13835 4.23112 4.66375 4.67771 4.82778 5.03396 5.07717 5.14181 5.35941 5.37196 5.45364 5.46523 5.47682 5.64962 5.83584 5.87428 5.88942 5.94632 6.04195 6.07133 6.29750 6.40340 6.55382 6.84107 6.97226 7.22173 7.61593 7.79531 7.85814 7.90491 8.47605 8.59345 8.96829 9.29026 10.72478 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.008383 B = 0.004098 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3339.115474 B = 6831.237557 C = 9050.118223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.457 3.543 5 O -0.517 6.517 6 C -0.101 4.101 7 C 0.232 3.768 8 H 0.048 0.952 9 C -0.548 4.548 10 H 0.071 0.929 11 C 0.083 3.917 12 N -0.859 5.859 13 Si 0.899 3.101 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.274 1.274 17 O -0.318 6.318 18 C 0.544 3.456 19 O -0.524 6.524 20 C -0.263 4.263 21 C 0.112 3.888 22 N -0.480 5.480 23 C 0.059 3.941 24 C -0.097 4.097 25 C -0.149 4.149 26 C -0.156 4.156 27 S 0.217 5.783 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.142 0.858 35 H 0.269 0.731 36 H 0.193 0.807 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.907 -10.150 5.858 11.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.283 6.283 4 C 0.301 3.699 5 O -0.404 6.404 6 C -0.139 4.139 7 C 0.179 3.821 8 H 0.066 0.934 9 C -0.585 4.585 10 H 0.089 0.911 11 C -0.125 4.125 12 N -0.494 5.494 13 Si 0.725 3.275 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.199 1.199 17 O -0.233 6.233 18 C 0.386 3.614 19 O -0.417 6.417 20 C -0.386 4.386 21 C -0.045 4.045 22 N -0.195 5.195 23 C -0.214 4.214 24 C -0.119 4.119 25 C -0.188 4.188 26 C -0.195 4.195 27 S 0.477 5.523 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.159 0.841 35 H 0.079 0.921 36 H 0.209 0.791 37 H 0.145 0.855 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.797 -10.771 5.507 12.230 hybrid contribution -0.505 1.285 0.023 1.381 sum 1.292 -9.486 5.530 11.056 Atomic orbital electron populations 1.21775 0.93255 1.02338 1.03345 1.22862 0.94878 0.81759 1.02055 1.86575 1.26045 1.31005 1.84698 1.24910 0.79530 0.94294 0.71156 1.90605 1.60254 1.43680 1.45896 1.21869 0.96422 0.88175 1.07415 1.20129 0.88197 0.92507 0.81264 0.93396 1.21352 1.32353 0.94208 1.10552 0.91101 1.25109 0.93747 0.99208 0.94397 1.69839 1.33956 1.34777 1.10852 0.86539 0.79896 0.83051 0.77981 1.19639 1.20851 1.19913 1.86702 1.35377 1.59003 1.42216 1.19067 0.81116 0.75953 0.85258 1.90765 1.58934 1.60306 1.31697 1.25502 1.02111 1.11642 0.99302 1.22644 1.00252 0.95691 0.85865 1.66002 1.06316 1.10947 1.36222 1.26416 0.96506 1.01460 0.97065 1.20503 1.01193 1.01485 0.88683 1.23008 1.00031 1.00327 0.95450 1.23054 0.98375 0.99048 0.99002 1.83778 1.19788 1.43651 1.05127 0.91689 0.90841 0.91578 0.91863 0.91748 0.87639 0.84080 0.92071 0.79058 0.85494 0.87254 0.88161 0.87902 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.29 37.15 0.38 -1.24 16 2 C 0.06 0.87 6.19 37.15 0.23 1.10 16 3 O -0.37 -6.71 10.22 -39.26 -0.40 -7.11 16 4 C 0.46 9.74 7.84 36.00 0.28 10.02 16 5 O -0.52 -12.23 15.17 -23.95 -0.36 -12.59 16 6 C -0.10 -2.27 5.23 -27.89 -0.15 -2.41 16 7 C 0.23 5.91 1.65 -27.89 -0.05 5.87 16 8 H 0.05 1.28 6.97 -51.93 -0.36 0.92 16 9 C -0.55 -14.60 8.92 -34.44 -0.31 -14.90 16 10 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 11 C 0.08 2.13 5.25 -17.82 -0.09 2.04 16 12 N -0.86 -22.19 10.93 55.43 0.61 -21.58 16 13 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 14 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 17 O -0.32 -8.21 8.33 -46.22 -0.38 -8.59 16 18 C 0.54 13.48 7.89 34.06 0.27 13.75 16 19 O -0.52 -13.96 16.23 -19.35 -0.31 -14.28 16 20 C -0.26 -5.45 6.51 -36.79 -0.24 -5.69 16 21 C 0.11 2.13 11.20 -18.48 -0.21 1.93 16 22 N -0.48 -8.17 9.96 -11.26 -0.11 -8.28 16 23 C 0.06 0.87 6.95 -13.30 -0.09 0.78 16 24 C -0.10 -1.05 6.28 -91.77 -0.58 -1.62 16 25 C -0.15 -1.42 10.12 -26.73 -0.27 -1.69 16 26 C -0.16 -1.45 10.23 -26.73 -0.27 -1.72 16 27 S 0.22 3.54 23.00 -107.50 -2.47 1.07 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 32 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 33 H 0.11 2.14 8.14 -51.93 -0.42 1.72 16 34 H 0.14 3.34 6.22 -51.93 -0.32 3.02 16 35 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 36 H 0.19 3.60 8.06 -52.49 -0.42 3.18 16 37 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.11 1.22 7.83 -51.93 -0.41 0.81 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -31.39 375.86 -9.17 -40.56 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.29 Total: 3.86 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -1.09 Total: 6.20 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: 0.49 Total: -29.86 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -1.46 Total: -42.57 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -2.47 Total: 1.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.39 -9.17 -40.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870619333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.306 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds