Wall clock time and date at job start Tue Mar 31 2020 22:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3 8 8 H 1.08999 * 109.47456 * 54.99697 * 7 6 4 9 9 C 1.50695 * 109.47310 * 174.99936 * 7 6 4 10 10 H 1.08005 * 120.00302 * 239.99738 * 9 7 6 11 11 C 1.37884 * 120.00111 * 59.99751 * 9 7 6 12 12 N 1.31510 * 119.99863 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99841 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47365 * 60.00472 * 13 11 9 15 15 H 1.48505 * 109.46871 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47303 * 299.99668 * 13 11 9 17 17 O 1.45203 * 109.46931 * 294.99585 * 7 6 4 18 18 C 1.34879 * 116.99753 * 150.00098 * 17 7 6 19 19 O 1.21611 * 120.00501 * 359.97438 * 18 17 7 20 20 C 1.46501 * 119.99839 * 180.02562 * 18 17 7 21 21 C 1.36763 * 126.18013 * 359.68414 * 20 18 17 22 22 N 1.30910 * 113.93217 * 179.78886 * 21 20 18 23 23 C 1.29394 * 117.46701 * 0.52532 * 22 21 20 24 24 C 1.50700 * 124.70690 * 179.72475 * 23 22 21 25 25 C 1.53005 * 117.49753 * 8.59674 * 24 23 22 26 26 C 1.52999 * 60.00001 * 252.51066 * 25 24 23 27 27 S 1.70926 * 110.58821 * 359.70892 * 23 22 21 28 28 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 29 29 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 34 34 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 35 35 H 0.96998 * 120.00236 * 180.02562 * 12 11 9 36 36 H 1.07998 * 123.03103 * 0.02562 * 21 20 18 37 37 H 1.08997 * 115.55369 * 154.30967 * 24 23 22 38 38 H 1.09001 * 117.49688 * 0.02562 * 25 24 23 39 39 H 1.09004 * 117.49115 * 145.01722 * 25 24 23 40 40 H 1.09003 * 117.49848 * 252.50476 * 26 25 24 41 41 H 1.08998 * 117.51448 * 107.48448 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4485 2.8573 0.0107 8 1 5.7835 2.2522 -0.8318 9 6 6.0247 4.2448 -0.1070 10 1 6.6624 4.4958 -0.9418 11 6 5.7377 5.1940 0.8510 12 7 4.9616 4.8883 1.8678 13 14 6.4513 6.9141 0.7047 14 1 5.9918 7.5345 -0.5638 15 1 5.9957 7.7384 1.8529 16 1 7.9343 6.8368 0.7093 17 8 5.8973 2.2506 1.2512 18 6 7.0476 1.5476 1.2079 19 8 7.6583 1.4445 0.1613 20 6 7.5608 0.9073 2.4215 21 6 6.9829 0.9452 3.6605 22 7 7.6453 0.2841 4.5758 23 6 8.7413 -0.3008 4.2138 24 6 9.6322 -1.0978 5.1316 25 6 9.1121 -1.3932 6.5399 26 6 10.2339 -0.3728 6.3371 27 16 9.0383 -0.0444 2.5502 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.5878 3.4722 -0.8839 34 1 3.5816 3.4669 0.8960 35 1 4.7594 5.5562 2.5415 36 1 6.0612 1.4698 3.8643 37 1 10.2408 -1.8623 4.6489 38 1 8.1254 -1.0114 6.8024 39 1 9.3785 -2.3525 6.9837 40 1 11.2383 -0.6606 6.6477 41 1 9.9858 0.6807 6.4662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870619333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:56 Heat of formation + Delta-G solvation = -123.620046 kcal Electronic energy + Delta-G solvation = -26919.034736 eV Core-core repulsion = 22891.391408 eV Total energy + Delta-G solvation = -4027.643328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.58432 -41.17589 -40.50243 -37.96419 -37.75402 -37.12549 -35.10968 -32.96894 -32.25621 -31.41607 -28.27413 -27.73875 -24.98857 -24.14850 -23.52394 -23.24318 -22.71951 -21.58742 -20.50591 -19.31950 -18.97939 -18.52176 -18.07238 -17.62491 -17.29559 -17.10510 -16.64735 -16.50520 -16.36930 -15.55865 -15.34471 -15.28244 -15.05877 -14.56164 -14.31960 -13.93536 -13.74424 -13.46678 -13.22478 -13.01666 -12.90901 -12.84362 -12.71684 -12.63687 -12.48482 -12.35957 -12.16642 -11.89500 -11.78204 -11.59961 -11.51251 -11.45876 -11.39584 -10.85963 -10.78254 -10.71624 -10.58405 -9.87171 -8.27213 -6.53529 -0.94444 -0.06262 0.52162 1.24113 1.26145 1.40780 1.42443 1.50697 1.78083 2.01352 2.20103 2.35500 2.80837 2.99529 3.07787 3.70419 3.84218 3.87028 3.94386 3.98733 4.05759 4.10828 4.17264 4.31358 4.32866 4.43904 4.53420 4.81356 4.84475 4.88686 4.91799 4.95451 4.99081 5.11757 5.15747 5.26611 5.31481 5.47070 5.58839 5.87889 5.92272 6.43377 6.52647 6.82141 7.01923 7.26415 8.74882 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.008383 B = 0.004098 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3339.115474 B = 6831.237557 C = 9050.118223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.362 6.362 4 C 0.464 3.536 5 O -0.545 6.545 6 C -0.093 4.093 7 C 0.230 3.770 8 H 0.021 0.979 9 C -0.577 4.577 10 H 0.057 0.943 11 C 0.051 3.949 12 N -0.872 5.872 13 Si 0.958 3.042 14 H -0.260 1.260 15 H -0.271 1.271 16 H -0.283 1.283 17 O -0.329 6.329 18 C 0.536 3.464 19 O -0.558 6.558 20 C -0.321 4.321 21 C 0.130 3.870 22 N -0.497 5.497 23 C 0.087 3.913 24 C -0.118 4.118 25 C -0.141 4.141 26 C -0.142 4.142 27 S 0.249 5.751 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.274 0.726 36 H 0.185 0.815 37 H 0.159 0.841 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 -11.122 7.742 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 O -0.279 6.279 4 C 0.310 3.690 5 O -0.435 6.435 6 C -0.131 4.131 7 C 0.178 3.822 8 H 0.039 0.961 9 C -0.614 4.614 10 H 0.075 0.925 11 C -0.156 4.156 12 N -0.507 5.507 13 Si 0.782 3.218 14 H -0.185 1.185 15 H -0.196 1.196 16 H -0.209 1.209 17 O -0.244 6.244 18 C 0.382 3.618 19 O -0.453 6.453 20 C -0.443 4.443 21 C -0.029 4.029 22 N -0.211 5.211 23 C -0.186 4.186 24 C -0.140 4.140 25 C -0.180 4.180 26 C -0.182 4.182 27 S 0.510 5.490 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.084 0.916 36 H 0.202 0.798 37 H 0.177 0.823 38 H 0.108 0.892 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.178 -11.745 7.383 14.043 hybrid contribution -0.606 1.431 -0.431 1.613 sum 1.571 -10.314 6.951 12.537 Atomic orbital electron populations 1.21804 0.89714 1.04466 1.03803 1.23297 0.97581 0.79658 1.02034 1.86545 1.23912 1.33538 1.83919 1.24544 0.80469 0.93397 0.70585 1.90592 1.61222 1.44357 1.47342 1.21662 0.94566 0.89174 1.07671 1.20075 0.89999 0.91643 0.80530 0.96066 1.21437 1.33481 0.95323 1.11135 0.92493 1.25695 0.93831 1.02236 0.93794 1.69916 1.33980 1.35834 1.10953 0.85632 0.78405 0.79047 0.78746 1.18452 1.19571 1.20921 1.86681 1.36139 1.59439 1.42114 1.19677 0.80406 0.75394 0.86361 1.90715 1.59649 1.61742 1.33225 1.25287 1.05530 1.15221 0.98293 1.22624 0.99826 0.94703 0.85700 1.66125 1.07406 1.12187 1.35414 1.27328 0.95446 0.98796 0.97026 1.20952 1.01701 1.02431 0.88910 1.23117 0.99294 1.01856 0.93714 1.23178 1.00055 0.98164 0.96768 1.83557 1.17245 1.42322 1.05869 0.90994 0.87828 0.91340 0.91643 0.92175 0.85942 0.85098 0.91616 0.79811 0.82321 0.89233 0.84947 0.84540 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 10.29 71.98 0.74 -2.02 16 2 C 0.05 1.38 6.19 71.98 0.45 1.83 16 3 O -0.36 -13.35 10.22 -51.41 -0.53 -13.87 16 4 C 0.46 20.48 7.84 71.23 0.56 21.04 16 5 O -0.54 -26.92 15.17 26.91 0.41 -26.51 16 6 C -0.09 -4.34 5.23 29.85 0.16 -4.18 16 7 C 0.23 12.42 1.65 29.85 0.05 12.47 16 8 H 0.02 1.22 6.97 -2.39 -0.02 1.21 16 9 C -0.58 -32.10 8.92 25.60 0.23 -31.87 16 10 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 11 C 0.05 2.66 5.25 84.66 0.44 3.10 16 12 N -0.87 -45.77 10.93 21.45 0.23 -45.54 16 13 Si 0.96 41.54 29.54 68.60 2.03 43.56 16 14 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 15 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 O -0.33 -17.94 8.33 -52.93 -0.44 -18.38 16 18 C 0.54 28.17 7.89 69.98 0.55 28.73 16 19 O -0.56 -31.60 16.23 19.47 0.32 -31.28 16 20 C -0.32 -13.82 6.51 24.08 0.16 -13.66 16 21 C 0.13 5.10 11.20 84.48 0.95 6.04 16 22 N -0.50 -16.69 9.96 -189.53 -1.89 -18.58 16 23 C 0.09 2.44 6.95 88.47 0.62 3.06 16 24 C -0.12 -2.15 6.28 -11.54 -0.07 -2.22 16 25 C -0.14 -2.17 10.12 30.60 0.31 -1.86 16 26 C -0.14 -2.13 10.23 30.59 0.31 -1.81 16 27 S 0.25 8.05 23.00 -56.49 -1.30 6.75 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.87 8.13 -2.39 -0.02 1.85 16 32 H 0.06 1.79 8.13 -2.38 -0.02 1.77 16 33 H 0.12 5.13 8.14 -2.38 -0.02 5.11 16 34 H 0.13 6.41 6.22 -2.39 -0.01 6.39 16 35 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 36 H 0.18 7.28 8.06 -2.91 -0.02 7.26 16 37 H 0.16 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 1.80 7.83 -2.39 -0.02 1.78 16 39 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -71.80 375.86 5.33 -66.47 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 1.06 Total: 18.76 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 5.44 Total: 18.63 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -1.65 Total: -64.12 kcal Atomic # 8 Polarization: -89.81 SS G_CDS: -0.24 Total: -90.05 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 8.05 SS G_CDS: -1.30 Total: 6.75 kcal Total: -71.80 5.33 -66.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870619333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.150 kcal (2) G-P(sol) polarization free energy of solvation -71.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds