Wall clock time and date at job start Tue Mar 31 2020 22:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45198 * 109.47136 * 2 1 4 4 C 1.34223 * 117.00237 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99817 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.00265 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.46963 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47310 * 54.68878 * 7 6 4 9 9 C 1.50700 * 109.46821 * 174.69132 * 7 6 4 10 10 H 1.08002 * 119.99941 * 245.40675 * 9 7 6 11 11 C 1.37886 * 120.00120 * 65.40764 * 9 7 6 12 12 N 1.31510 * 119.99763 * 6.41257 * 11 9 7 13 13 Si 1.86798 * 119.99840 * 186.41319 * 11 9 7 14 14 H 1.48501 * 109.47071 * 84.97435 * 13 11 9 15 15 H 1.48496 * 109.46885 * 204.97687 * 13 11 9 16 16 H 1.48495 * 109.47100 * 324.97686 * 13 11 9 17 17 O 1.45206 * 109.46884 * 294.68825 * 7 6 4 18 18 C 1.34793 * 116.99593 * 150.00560 * 17 7 6 19 19 O 1.21556 * 120.00345 * 359.97438 * 18 17 7 20 20 C 1.47118 * 119.99773 * 180.02562 * 18 17 7 21 21 C 1.35288 * 123.15416 * 179.97438 * 20 18 17 22 22 S 1.70940 * 108.81928 * 180.02562 * 21 20 18 23 23 C 1.70769 * 91.13877 * 359.97438 * 22 21 20 24 24 C 1.50698 * 124.71019 * 179.97438 * 23 22 21 25 25 C 1.53004 * 117.49774 * 8.64390 * 24 23 22 26 26 C 1.52998 * 60.00195 * 252.51111 * 25 24 23 27 27 N 1.28626 * 110.57912 * 0.02562 * 23 22 21 28 28 H 1.09000 * 109.46661 * 60.00324 * 1 2 3 29 29 H 1.08994 * 109.46649 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46785 * 300.00283 * 1 2 3 31 31 H 1.08999 * 109.47023 * 240.00452 * 2 1 3 32 32 H 1.08994 * 109.47201 * 120.00104 * 2 1 3 33 33 H 1.08999 * 109.47162 * 59.99626 * 6 4 3 34 34 H 1.09000 * 109.46721 * 299.99530 * 6 4 3 35 35 H 0.97000 * 119.99819 * 179.97438 * 12 11 9 36 36 H 1.08000 * 125.59255 * 359.74934 * 21 20 18 37 37 H 1.08992 * 115.55225 * 154.35521 * 24 23 22 38 38 H 1.08999 * 117.49785 * 0.02562 * 25 24 23 39 39 H 1.08996 * 117.49584 * 145.01990 * 25 24 23 40 40 H 1.09003 * 117.49846 * 252.51304 * 26 25 24 41 41 H 1.09000 * 117.51515 * 107.48082 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9375 0.0000 7 6 5.4487 2.8574 -0.0001 8 1 5.7804 2.2455 -0.8390 9 6 6.0243 4.2439 -0.1310 10 1 6.5862 4.5143 -1.0129 11 6 5.8338 5.1674 0.8750 12 7 5.2605 4.8037 2.0014 13 14 6.3899 6.9348 0.6381 14 1 5.3292 7.6969 -0.0687 15 1 6.6458 7.5550 1.9628 16 1 7.6366 6.9576 -0.1684 17 8 5.9021 2.2605 1.2435 18 6 7.0515 1.5576 1.2015 19 8 7.6580 1.4463 0.1539 20 6 7.5715 0.9243 2.4233 21 6 8.7169 0.2049 2.4539 22 16 8.9715 -0.3589 4.0474 23 6 7.5366 0.3977 4.5809 24 6 7.0206 0.3579 5.9962 25 6 7.9372 -0.2393 7.0658 26 6 6.7051 -1.0144 6.5947 27 7 6.9568 1.0055 3.6067 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5852 3.4691 0.8904 34 1 3.5844 3.4701 -0.8896 35 1 5.1268 5.4532 2.7093 36 1 9.3620 0.0140 1.6090 37 1 6.3834 1.1927 6.2879 38 1 8.9137 -0.6029 6.7458 39 1 7.9034 0.2028 8.0615 40 1 5.8606 -1.0823 7.2806 41 1 6.8705 -1.8884 5.9647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870620461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:00 Heat of formation + Delta-G solvation = -124.367771 kcal Electronic energy + Delta-G solvation = -27221.576182 eV Core-core repulsion = 23193.900431 eV Total energy + Delta-G solvation = -4027.675751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.68551 -41.34855 -40.16196 -38.13614 -37.80087 -37.10887 -34.99374 -33.00144 -32.14349 -31.61265 -28.28324 -27.38696 -25.48651 -24.52206 -23.34186 -23.28542 -21.93150 -21.61123 -20.96811 -19.75238 -19.00815 -18.35719 -17.80354 -17.52062 -17.42749 -17.07939 -16.87820 -16.61720 -16.42244 -15.53860 -15.30186 -15.20401 -14.80945 -14.57995 -14.27637 -13.87475 -13.76969 -13.50698 -13.31366 -13.06061 -13.01561 -12.85124 -12.78457 -12.70439 -12.50335 -12.39017 -12.15078 -11.89961 -11.62260 -11.57204 -11.53532 -11.48149 -11.41155 -10.81556 -10.78435 -10.70280 -10.60390 -9.82843 -8.22091 -6.50065 -0.63423 0.15915 0.43771 0.84246 1.22166 1.39899 1.40599 1.51203 1.74777 2.16557 2.24622 2.36959 2.79579 2.99976 3.10390 3.72372 3.81011 3.87733 3.96736 4.04153 4.05055 4.08138 4.10699 4.30793 4.38219 4.42510 4.49427 4.63029 4.74515 4.84340 4.90473 4.96238 5.02093 5.08735 5.09302 5.20731 5.20941 5.44447 5.58960 5.87443 5.93821 6.45952 6.57846 6.79195 7.12397 7.30181 8.79457 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.007631 B = 0.004567 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3668.429650 B = 6129.780563 C = 8206.841827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 O -0.362 6.362 4 C 0.465 3.535 5 O -0.544 6.544 6 C -0.089 4.089 7 C 0.223 3.777 8 H 0.021 0.979 9 C -0.581 4.581 10 H 0.060 0.940 11 C 0.044 3.956 12 N -0.866 5.866 13 Si 0.960 3.040 14 H -0.256 1.256 15 H -0.280 1.280 16 H -0.277 1.277 17 O -0.310 6.310 18 C 0.525 3.475 19 O -0.554 6.554 20 C 0.007 3.993 21 C -0.242 4.242 22 S 0.314 5.686 23 C 0.039 3.961 24 C -0.120 4.120 25 C -0.142 4.142 26 C -0.150 4.150 27 N -0.462 5.462 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.269 0.731 36 H 0.199 0.801 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 -11.917 10.280 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 O -0.279 6.279 4 C 0.311 3.689 5 O -0.434 6.434 6 C -0.126 4.126 7 C 0.170 3.830 8 H 0.039 0.961 9 C -0.617 4.617 10 H 0.078 0.922 11 C -0.163 4.163 12 N -0.500 5.500 13 Si 0.784 3.216 14 H -0.180 1.180 15 H -0.205 1.205 16 H -0.202 1.202 17 O -0.223 6.223 18 C 0.369 3.631 19 O -0.448 6.448 20 C -0.126 4.126 21 C -0.384 4.384 22 S 0.573 5.427 23 C -0.240 4.240 24 C -0.142 4.142 25 C -0.180 4.180 26 C -0.188 4.188 27 N -0.177 5.177 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.216 0.784 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.031 -12.469 10.685 16.421 hybrid contribution -0.070 1.469 -1.596 2.170 sum -0.039 -11.000 9.089 14.269 Atomic orbital electron populations 1.21806 0.89521 1.04539 1.03826 1.23311 0.97698 0.79598 1.01979 1.86536 1.23793 1.33644 1.83931 1.24482 0.80514 0.93344 0.70603 1.90588 1.61272 1.44337 1.47199 1.21599 0.94883 0.89292 1.06857 1.20132 0.89910 0.92105 0.80845 0.96108 1.21431 1.38234 0.95939 1.06138 0.92197 1.25815 0.93736 1.02845 0.93914 1.70171 1.39929 1.35537 1.04387 0.85558 0.79127 0.79218 0.77710 1.18032 1.20500 1.20241 1.86791 1.35999 1.58791 1.40731 1.20344 0.80560 0.75458 0.86736 1.90673 1.60062 1.61629 1.32447 1.19542 0.96097 1.05262 0.91719 1.26983 1.01008 1.03240 1.07149 1.81764 1.20781 1.45843 0.94328 1.26951 0.97675 0.99981 0.99384 1.20542 1.07109 1.01472 0.85060 1.23325 0.95065 1.01205 0.98406 1.23297 1.00942 0.92149 1.02453 1.66874 1.32472 1.19901 0.98451 0.90882 0.87707 0.91383 0.91529 0.92416 0.86760 0.85320 0.92167 0.78351 0.85998 0.87251 0.84934 0.85780 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 10.29 71.98 0.74 -2.11 16 2 C 0.05 1.44 6.19 71.98 0.45 1.88 16 3 O -0.36 -13.93 10.22 -51.35 -0.52 -14.45 16 4 C 0.47 21.56 7.84 71.24 0.56 22.12 16 5 O -0.54 -28.25 15.18 26.84 0.41 -27.85 16 6 C -0.09 -4.33 5.30 29.85 0.16 -4.17 16 7 C 0.22 12.69 1.65 29.85 0.05 12.73 16 8 H 0.02 1.25 6.96 -2.39 -0.02 1.23 16 9 C -0.58 -33.69 8.88 25.60 0.23 -33.47 16 10 H 0.06 3.49 7.82 -2.91 -0.02 3.47 16 11 C 0.04 2.40 5.23 84.66 0.44 2.85 16 12 N -0.87 -49.41 11.23 21.45 0.24 -49.17 16 13 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 14 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 O -0.31 -18.40 8.00 -52.12 -0.42 -18.82 16 18 C 0.53 29.65 7.91 70.15 0.55 30.20 16 19 O -0.55 -32.48 15.97 19.65 0.31 -32.17 16 20 C 0.01 0.33 6.71 40.53 0.27 0.61 16 21 C -0.24 -8.53 10.62 67.14 0.71 -7.81 16 22 S 0.31 7.49 21.65 -56.49 -1.22 6.27 16 23 C 0.04 1.24 6.99 88.58 0.62 1.86 16 24 C -0.12 -2.81 6.33 -11.54 -0.07 -2.89 16 25 C -0.14 -1.92 10.01 30.60 0.31 -1.61 16 26 C -0.15 -2.35 10.23 30.60 0.31 -2.04 16 27 N -0.46 -20.49 10.60 -180.91 -1.92 -22.40 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 32 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 33 H 0.11 5.91 6.90 -2.39 -0.02 5.89 16 34 H 0.13 5.51 8.14 -2.39 -0.02 5.49 16 35 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 36 H 0.20 6.32 8.03 -2.91 -0.02 6.30 16 37 H 0.12 3.15 8.14 -2.39 -0.02 3.14 16 38 H 0.11 1.22 7.21 -2.39 -0.02 1.20 16 39 H 0.13 1.22 8.14 -2.39 -0.02 1.21 16 40 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -81.39 374.53 5.29 -76.10 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 1.06 Total: 19.10 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 5.33 Total: 18.16 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.68 Total: -71.57 kcal Atomic # 8 Polarization: -93.07 SS G_CDS: -0.22 Total: -93.29 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 7.49 SS G_CDS: -1.22 Total: 6.27 kcal Total: -81.39 5.29 -76.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870620461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.270 kcal (2) G-P(sol) polarization free energy of solvation -81.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds