Wall clock time and date at job start Tue Mar 31 2020 22:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 117.00223 * 2 1 4 4 O 1.20828 * 119.99933 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00082 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47258 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.47505 * 180.02562 * 6 5 3 8 8 C 1.37100 * 120.00101 * 264.53956 * 7 6 5 9 9 H 1.07999 * 120.00008 * 146.01306 * 8 7 6 10 10 C 1.38949 * 119.99891 * 326.00920 * 8 7 6 11 11 N 1.31409 * 119.99993 * 337.81511 * 10 8 7 12 12 Si 1.86805 * 120.00089 * 157.80894 * 10 8 7 13 13 H 1.48501 * 109.46723 * 59.99968 * 12 10 8 14 14 H 1.48496 * 109.47337 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46836 * 300.00392 * 12 10 8 16 16 C 1.34773 * 120.00296 * 84.53876 * 7 6 5 17 17 O 1.21290 * 119.99934 * 0.02562 * 16 7 6 18 18 C 1.50703 * 120.00409 * 180.02562 * 16 7 6 19 19 C 1.53005 * 109.47228 * 179.97438 * 18 16 7 20 20 C 1.50697 * 109.46995 * 180.02562 * 19 18 16 21 21 O 1.21451 * 120.00312 * 359.97438 * 20 19 18 22 22 C 1.41236 * 120.00128 * 179.97438 * 20 19 18 23 23 C 1.37181 * 125.47976 * 179.97438 * 22 20 19 24 24 C 1.37197 * 113.24100 * 180.02562 * 23 22 20 25 25 C 1.34025 * 115.14856 * 359.97438 * 24 23 22 26 26 S 1.70617 * 110.99806 * 359.72986 * 25 24 23 27 27 H 1.09002 * 109.47442 * 300.00171 * 1 2 3 28 28 H 1.09008 * 109.47220 * 60.00025 * 1 2 3 29 29 H 1.09003 * 109.47389 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47330 * 60.00448 * 5 3 2 31 31 H 1.09002 * 109.47702 * 299.99991 * 5 3 2 32 32 H 1.09006 * 109.47419 * 59.99820 * 6 5 3 33 33 H 1.09008 * 109.46890 * 300.00117 * 6 5 3 34 34 H 0.97003 * 120.00164 * 180.02562 * 11 10 8 35 35 H 1.09005 * 109.47103 * 60.00078 * 18 16 7 36 36 H 1.08998 * 109.47110 * 300.00013 * 18 16 7 37 37 H 1.09001 * 109.46633 * 300.00084 * 19 18 16 38 38 H 1.08993 * 109.47325 * 60.00228 * 19 18 16 39 39 H 1.08000 * 123.38265 * 359.97438 * 23 22 20 40 40 H 1.07999 * 122.43132 * 180.02562 * 24 23 22 41 41 H 1.08000 * 124.49991 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4631 2.8187 0.0011 8 6 6.1418 2.9670 1.1830 9 1 7.1090 2.5041 1.3120 10 6 5.5853 3.7129 2.2148 11 7 4.6660 4.6143 1.9521 12 14 6.1440 3.4342 3.9754 13 1 7.6002 3.7055 4.0814 14 1 5.4025 4.3483 4.8807 15 1 5.8732 2.0266 4.3637 16 6 6.1418 2.7435 -1.1608 17 8 5.5414 2.6128 -2.2066 18 6 7.6468 2.8218 -1.1609 19 6 8.1633 2.7114 -2.5969 20 6 9.6682 2.7891 -2.5968 21 8 10.2695 2.9205 -1.5498 22 6 10.3796 2.7091 -3.8143 23 6 11.7439 2.7675 -3.9446 24 6 12.1684 2.6651 -5.2453 25 6 11.1927 2.5270 -6.1536 26 16 9.6592 2.5107 -5.4060 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9564 0.7806 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 3.6101 3.2360 0.8911 33 1 3.6107 3.2363 -0.8890 34 1 4.2778 5.1353 2.6724 35 1 8.0532 2.0044 -0.5652 36 1 7.9611 3.7740 -0.7335 37 1 7.8490 1.7590 -3.0238 38 1 7.7570 3.5285 -3.1929 39 1 12.4164 2.8833 -3.1075 40 1 13.2132 2.6930 -5.5175 41 1 11.3557 2.4340 -7.2172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871339030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:53 Heat of formation + Delta-G solvation = -141.332658 kcal Electronic energy + Delta-G solvation = -26336.263827 eV Core-core repulsion = 22307.852422 eV Total energy + Delta-G solvation = -4028.411404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.57812 -41.00418 -40.23618 -38.29033 -37.66734 -36.86931 -34.08514 -33.70876 -32.43677 -31.16330 -28.80574 -27.51862 -26.90715 -25.63533 -24.20650 -22.00222 -21.52485 -20.90204 -20.15619 -19.08727 -18.81815 -18.02487 -17.79137 -17.64428 -17.41442 -16.86751 -16.82689 -16.34361 -16.06112 -15.65507 -15.57280 -15.02916 -14.92425 -14.56747 -14.16979 -14.12591 -13.78674 -13.68451 -13.66578 -13.35993 -13.19239 -13.07774 -12.95889 -12.82259 -12.72548 -12.46084 -12.12943 -12.06072 -11.94351 -11.79974 -11.78592 -11.61003 -11.03979 -10.88860 -10.39876 -9.87119 -9.57223 -9.53695 -8.32365 -6.06685 -0.69305 0.56475 1.00704 1.12596 1.21701 1.43874 1.49225 1.57878 1.65911 1.96213 2.00571 2.33321 2.81971 3.04291 3.32993 3.83836 3.88993 4.09797 4.12655 4.16503 4.25031 4.30992 4.31838 4.33973 4.41154 4.51046 4.60082 4.62940 4.69243 4.75842 4.95004 5.01563 5.04752 5.10592 5.26604 5.27149 5.38120 5.39750 5.52134 5.93819 6.38426 6.48062 6.69605 7.10175 7.53942 7.96183 8.69818 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.002938 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.486436 B = 9529.446246 C =11570.833907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.474 3.526 4 O -0.537 6.537 5 C -0.115 4.115 6 C 0.132 3.868 7 N -0.447 5.447 8 C -0.359 4.359 9 H 0.104 0.896 10 C 0.004 3.996 11 N -0.889 5.889 12 Si 0.978 3.022 13 H -0.264 1.264 14 H -0.286 1.286 15 H -0.261 1.261 16 C 0.460 3.540 17 O -0.625 6.625 18 C -0.097 4.097 19 C -0.144 4.144 20 C 0.428 3.572 21 O -0.488 6.488 22 C -0.341 4.341 23 C -0.046 4.046 24 C -0.167 4.167 25 C -0.212 4.212 26 S 0.247 5.753 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.138 0.862 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.035 0.965 34 H 0.272 0.728 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.150 0.850 40 H 0.171 0.829 41 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.519 -8.554 -11.564 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.318 3.682 4 O -0.427 6.427 5 C -0.154 4.154 6 C 0.008 3.992 7 N -0.165 5.165 8 C -0.486 4.486 9 H 0.121 0.879 10 C -0.200 4.200 11 N -0.525 5.525 12 Si 0.802 3.198 13 H -0.189 1.189 14 H -0.212 1.212 15 H -0.186 1.186 16 C 0.251 3.749 17 O -0.513 6.513 18 C -0.136 4.136 19 C -0.182 4.182 20 C 0.309 3.691 21 O -0.368 6.368 22 C -0.459 4.459 23 C -0.081 4.081 24 C -0.197 4.197 25 C -0.350 4.350 26 S 0.515 5.485 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.114 0.886 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.168 0.832 40 H 0.189 0.811 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.660 -8.257 -11.976 15.609 hybrid contribution 1.167 0.599 1.475 1.974 sum 6.827 -7.657 -10.502 14.681 Atomic orbital electron populations 1.23587 0.74758 1.05893 1.02451 1.86506 1.25171 1.32315 1.83853 1.23811 0.92063 0.81294 0.71043 1.90643 1.67831 1.37481 1.46717 1.21667 0.86890 1.00699 1.06098 1.20957 0.82270 0.93083 1.02900 1.43642 1.04659 1.62349 1.05856 1.19766 1.05785 1.32479 0.90557 0.87875 1.26193 0.96748 0.92838 1.04174 1.70052 1.28792 1.19140 1.34538 0.85213 0.78755 0.78678 0.77176 1.18907 1.21158 1.18602 1.21011 0.90887 0.79980 0.83036 1.90494 1.71619 1.57037 1.32160 1.21009 0.91296 1.04212 0.97132 1.21762 0.92611 1.05778 0.98058 1.20287 0.91023 0.70902 0.86884 1.90574 1.72384 1.38909 1.34963 1.24139 0.99270 1.22403 1.00049 1.21278 0.93230 0.94305 0.99296 1.20284 1.02634 1.05904 0.90830 1.26039 0.97335 1.05003 1.06602 1.83348 1.06664 1.64225 0.94213 0.92138 0.92108 0.84350 0.87677 0.86535 0.88603 0.94674 0.91843 0.89214 0.90274 0.87213 0.88050 0.83198 0.81127 0.78022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.36 -11.40 10.56 -51.41 -0.54 -11.94 16 3 C 0.47 18.37 7.96 71.23 0.57 18.94 16 4 O -0.54 -24.04 15.73 21.96 0.35 -23.70 16 5 C -0.11 -4.64 6.10 29.85 0.18 -4.46 16 6 C 0.13 6.57 4.19 86.38 0.36 6.94 16 7 N -0.45 -22.49 2.56 -635.54 -1.63 -24.12 16 8 C -0.36 -17.99 8.70 84.04 0.73 -17.26 16 9 H 0.10 4.91 6.97 -2.91 -0.02 4.89 16 10 C 0.00 0.21 4.92 84.93 0.42 0.62 16 11 N -0.89 -48.38 11.34 21.66 0.25 -48.13 16 12 Si 0.98 39.69 29.61 68.60 2.03 41.72 16 13 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 14 H -0.29 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 16 C 0.46 22.01 7.60 87.66 0.67 22.68 16 17 O -0.62 -31.53 15.65 -3.06 -0.05 -31.58 16 18 C -0.10 -3.93 3.64 29.85 0.11 -3.83 16 19 C -0.14 -4.83 4.28 29.85 0.13 -4.71 16 20 C 0.43 13.61 6.93 26.42 0.18 13.79 16 21 O -0.49 -18.40 16.36 -3.56 -0.06 -18.46 16 22 C -0.34 -8.63 6.23 22.76 0.14 -8.48 16 23 C -0.05 -1.00 9.95 21.78 0.22 -0.78 16 24 C -0.17 -2.51 10.14 21.06 0.21 -2.30 16 25 C -0.21 -2.82 10.93 66.86 0.73 -2.09 16 26 S 0.25 4.60 22.42 -56.49 -1.27 3.34 16 27 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 28 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 31 H 0.12 4.38 8.14 -2.39 -0.02 4.36 16 32 H 0.10 5.22 5.31 -2.38 -0.01 5.21 16 33 H 0.03 1.89 7.55 -2.38 -0.02 1.87 16 34 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 35 H 0.09 3.53 7.60 -2.38 -0.02 3.52 16 36 H 0.08 3.44 8.05 -2.39 -0.02 3.42 16 37 H 0.11 3.43 8.10 -2.39 -0.02 3.41 16 38 H 0.10 3.38 8.10 -2.39 -0.02 3.36 16 39 H 0.15 3.17 8.02 -2.91 -0.02 3.15 16 40 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -69.93 372.50 5.98 -63.95 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 1.06 Total: 28.06 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 5.84 Total: 20.86 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -1.38 Total: -72.25 kcal Atomic # 8 Polarization: -85.37 SS G_CDS: -0.30 Total: -85.67 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.27 Total: 3.34 kcal Total: -69.93 5.98 -63.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.383 kcal (2) G-P(sol) polarization free energy of solvation -69.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds