Wall clock time and date at job start Tue Mar 31 2020 22:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 116.99706 * 2 1 4 4 O 1.20828 * 120.00452 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99723 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47135 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47337 * 179.97438 * 6 5 3 8 8 C 1.36864 * 120.00123 * 283.25791 * 7 6 5 9 9 H 1.08001 * 120.00214 * 314.89750 * 8 7 6 10 10 C 1.39052 * 120.00007 * 134.89509 * 8 7 6 11 11 N 1.31367 * 119.99895 * 338.80058 * 10 8 7 12 12 Si 1.86800 * 120.00133 * 158.80147 * 10 8 7 13 13 H 1.48498 * 109.46943 * 65.00069 * 12 10 8 14 14 H 1.48496 * 109.47046 * 185.00326 * 12 10 8 15 15 H 1.48500 * 109.46837 * 305.00315 * 12 10 8 16 16 C 1.34771 * 119.99699 * 103.25723 * 7 6 5 17 17 O 1.21594 * 120.00022 * 186.51535 * 16 7 6 18 18 C 1.47731 * 120.00264 * 6.51341 * 16 7 6 19 19 C 1.39652 * 120.14753 * 143.90559 * 18 16 7 20 20 C 1.37939 * 119.84426 * 180.29830 * 19 18 16 21 21 C 1.38379 * 120.14888 * 359.43418 * 20 19 18 22 22 S 1.76200 * 119.84571 * 180.31791 * 21 20 19 23 23 C 1.81398 * 103.00072 * 270.27431 * 22 21 20 24 24 O 1.42096 * 102.99970 * 24.12788 * 22 21 20 25 25 C 1.38381 * 120.30440 * 0.59250 * 21 20 19 26 26 C 1.37937 * 120.15153 * 359.68243 * 25 21 20 27 27 H 1.08995 * 109.47243 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47289 * 300.00473 * 1 2 3 29 29 H 1.09004 * 109.46798 * 60.00100 * 1 2 3 30 30 H 1.08996 * 109.47417 * 60.00170 * 5 3 2 31 31 H 1.09003 * 109.46756 * 299.99678 * 5 3 2 32 32 H 1.09005 * 109.46953 * 59.99584 * 6 5 3 33 33 H 1.09004 * 109.47296 * 299.99984 * 6 5 3 34 34 H 0.96999 * 119.99985 * 185.04295 * 11 10 8 35 35 H 1.07996 * 120.07822 * 0.03463 * 19 18 16 36 36 H 1.07993 * 119.92343 * 179.70352 * 20 19 18 37 37 H 1.08991 * 109.46976 * 60.00034 * 23 22 21 38 38 H 1.08998 * 109.47203 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.47310 * 299.99768 * 23 22 21 40 40 H 1.07998 * 119.92149 * 179.69983 * 25 21 20 41 41 H 1.07999 * 120.07569 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1598 2.5841 1.1554 9 1 5.8335 3.0303 2.0833 10 6 7.2876 1.7711 1.1338 11 7 7.4581 0.9103 0.1562 12 14 8.5604 1.9029 2.4948 13 1 7.9536 1.4800 3.7825 14 1 9.7151 1.0242 2.1794 15 1 9.0240 3.3095 2.6043 16 6 6.1229 3.1205 -1.1348 17 8 7.3374 3.0685 -1.1645 18 6 5.3707 3.5144 -2.3437 19 6 5.8862 4.4850 -3.2053 20 6 5.1757 4.8525 -4.3291 21 6 3.9604 4.2533 -4.6097 22 16 3.0635 4.7227 -6.0519 23 6 2.0295 6.0914 -5.4619 24 8 4.0778 5.2302 -6.9080 25 6 3.4435 3.2911 -3.7600 26 6 4.1408 2.9182 -2.6297 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.9564 0.7806 -0.8891 31 1 3.9556 0.7810 0.8909 32 1 3.6099 3.2368 0.8893 33 1 3.6107 3.2357 -0.8907 34 1 8.2058 0.2928 0.1786 35 1 6.8369 4.9500 -2.9900 36 1 5.5709 5.6064 -4.9937 37 1 2.6665 6.8918 -5.0856 38 1 1.4205 6.4673 -6.2840 39 1 1.3800 5.7372 -4.6614 40 1 2.4922 2.8309 -3.9824 41 1 3.7361 2.1675 -1.9672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871340127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:49 Heat of formation + Delta-G solvation = -93.675965 kcal Electronic energy + Delta-G solvation = -27539.088160 eV Core-core repulsion = 23512.743305 eV Total energy + Delta-G solvation = -4026.344855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -40.40963 -39.51617 -37.50821 -36.43380 -35.70988 -34.82307 -32.60861 -30.80853 -30.65611 -30.35895 -28.85451 -27.61092 -25.41301 -24.02981 -22.61009 -22.43416 -20.51324 -19.66757 -18.05727 -17.54039 -17.25877 -16.62441 -16.41213 -16.20135 -15.69106 -15.17968 -14.92508 -14.82398 -14.54138 -14.13572 -13.77038 -13.71424 -13.49691 -13.24551 -13.08486 -13.06150 -12.72595 -12.38124 -12.17806 -12.10885 -12.02622 -11.65963 -11.62643 -11.26422 -10.92683 -10.88799 -10.74085 -10.66707 -10.56487 -10.35394 -10.25423 -10.12400 -8.92297 -8.88074 -8.63890 -8.36882 -8.23757 -7.34935 -6.28694 -4.02640 0.94927 1.64161 1.90375 2.40094 2.68395 2.86219 3.23429 3.32167 3.35860 3.64074 3.92477 4.17020 4.44964 4.70066 5.00469 5.05537 5.08126 5.09267 5.13200 5.15379 5.16386 5.19149 5.45656 5.46324 5.56706 5.65171 5.69703 5.76211 5.86174 5.99081 6.04578 6.25213 6.30759 6.40726 6.47286 6.53053 6.64008 6.80639 7.15323 7.48246 7.91719 8.11055 8.83524 8.95481 9.43291 10.05415 10.78979 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009189 B = 0.004429 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.450698 B = 6320.014886 C = 8872.688922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.513 6.513 5 C -0.128 4.128 6 C 0.094 3.906 7 N -0.436 5.436 8 C -0.358 4.358 9 H 0.084 0.916 10 C 0.078 3.922 11 N -0.819 5.819 12 Si 0.914 3.086 13 H -0.277 1.277 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.499 3.501 17 O -0.521 6.521 18 C -0.054 4.054 19 C -0.097 4.097 20 C -0.058 4.058 21 C -0.465 4.465 22 S 1.328 4.672 23 C -0.499 4.499 24 O -0.863 6.863 25 C -0.051 4.051 26 C -0.136 4.136 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.269 0.731 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.133 0.867 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.752 -0.592 -6.415 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.308 3.692 4 O -0.401 6.401 5 C -0.166 4.166 6 C -0.030 4.030 7 N -0.156 5.156 8 C -0.485 4.485 9 H 0.101 0.899 10 C -0.135 4.135 11 N -0.450 5.450 12 Si 0.741 3.259 13 H -0.203 1.203 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.287 3.713 17 O -0.399 6.399 18 C -0.058 4.058 19 C -0.118 4.118 20 C -0.078 4.078 21 C -0.563 4.563 22 S 1.526 4.474 23 C -0.655 4.655 24 O -0.858 6.858 25 C -0.071 4.071 26 C -0.155 4.155 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.151 0.849 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.115 -0.793 -7.441 17.768 hybrid contribution 1.634 1.549 1.746 2.849 sum -14.481 0.756 -5.694 15.579 Atomic orbital electron populations 1.23208 0.77121 1.03301 1.02339 1.86575 1.22884 1.34065 1.84232 1.24218 0.92457 0.81006 0.71561 1.90636 1.67428 1.36235 1.45793 1.21961 0.85237 1.02209 1.07232 1.21945 0.84852 0.92660 1.03547 1.43123 1.02614 1.60874 1.09011 1.19006 1.10523 1.31625 0.87298 0.89864 1.25303 0.98332 0.93344 0.96544 1.69789 1.28946 1.15150 1.31161 0.86242 0.80577 0.78632 0.80452 1.20279 1.21037 1.19746 1.17975 0.87454 0.82684 0.83219 1.90656 1.13211 1.53288 1.82727 1.20829 0.94161 0.94911 0.95882 1.21258 0.99769 0.97027 0.93723 1.20953 0.93476 0.97726 0.95601 1.27446 1.06002 1.07010 1.15860 1.69269 0.96374 1.01642 0.80092 1.27774 1.11789 1.16365 1.09589 1.93086 1.56835 1.80107 1.55790 1.20701 0.98885 0.94917 0.92570 1.22007 0.94753 1.01220 0.97509 0.88482 0.92129 0.92015 0.87515 0.86059 0.91328 0.89051 0.92112 0.85264 0.85780 0.90055 0.87982 0.87063 0.84894 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.80 10.57 -39.25 -0.41 -5.22 16 3 C 0.46 6.98 7.93 36.01 0.29 7.26 16 4 O -0.51 -8.40 15.73 -18.75 -0.29 -8.70 16 5 C -0.13 -2.15 5.11 -27.88 -0.14 -2.29 16 6 C 0.09 1.78 4.15 -4.04 -0.02 1.77 16 7 N -0.44 -10.35 2.53 -115.92 -0.29 -10.64 16 8 C -0.36 -9.25 9.04 -15.00 -0.14 -9.39 16 9 H 0.08 2.07 7.92 -52.49 -0.42 1.65 16 10 C 0.08 2.07 4.29 -17.45 -0.07 1.99 16 11 N -0.82 -22.84 11.83 55.50 0.66 -22.18 16 12 Si 0.91 21.01 29.61 -169.99 -5.03 15.98 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 16 C 0.50 12.49 6.83 -12.38 -0.08 12.40 16 17 O -0.52 -15.25 14.46 5.28 0.08 -15.17 16 18 C -0.05 -1.11 5.45 -104.97 -0.57 -1.68 16 19 C -0.10 -1.89 9.62 -39.16 -0.38 -2.26 16 20 C -0.06 -0.99 9.42 -39.64 -0.37 -1.36 16 21 C -0.47 -6.47 5.62 -39.48 -0.22 -6.69 16 22 S 1.33 13.25 14.18 -107.50 -1.52 11.72 16 23 C -0.50 -4.33 10.70 101.05 1.08 -3.25 16 24 O -0.86 -14.19 16.89 -35.23 -0.60 -14.79 16 25 C -0.05 -0.68 9.73 -39.64 -0.39 -1.06 16 26 C -0.14 -2.28 7.38 -39.17 -0.29 -2.57 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.11 1.80 6.98 -51.93 -0.36 1.44 16 31 H 0.12 2.16 8.07 -51.93 -0.42 1.75 16 32 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 33 H 0.09 1.62 3.98 -51.93 -0.21 1.42 16 34 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.13 2.54 8.02 -52.49 -0.42 2.12 16 36 H 0.12 2.08 7.45 -52.49 -0.39 1.69 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.14 2.30 3.38 -52.49 -0.18 2.12 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -37.81 362.03 -7.11 -44.92 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.91 Total: 4.36 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.24 Total: -5.74 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.36 Total: -32.83 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -1.23 Total: -43.87 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 16 Polarization: 13.25 SS G_CDS: -1.52 Total: 11.72 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.81 -7.11 -44.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871340127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.758 kcal (2) G-P(sol) polarization free energy of solvation -37.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds