Wall clock time and date at job start Tue Mar 31 2020 22:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 116.99706 * 2 1 4 4 O 1.20828 * 120.00452 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99723 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47135 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47337 * 179.97438 * 6 5 3 8 8 C 1.36864 * 120.00123 * 283.25791 * 7 6 5 9 9 H 1.08001 * 120.00214 * 314.89750 * 8 7 6 10 10 C 1.39052 * 120.00007 * 134.89509 * 8 7 6 11 11 N 1.31367 * 119.99895 * 338.80058 * 10 8 7 12 12 Si 1.86800 * 120.00133 * 158.80147 * 10 8 7 13 13 H 1.48498 * 109.46943 * 65.00069 * 12 10 8 14 14 H 1.48496 * 109.47046 * 185.00326 * 12 10 8 15 15 H 1.48500 * 109.46837 * 305.00315 * 12 10 8 16 16 C 1.34771 * 119.99699 * 103.25723 * 7 6 5 17 17 O 1.21594 * 120.00022 * 186.51535 * 16 7 6 18 18 C 1.47731 * 120.00264 * 6.51341 * 16 7 6 19 19 C 1.39652 * 120.14753 * 143.90559 * 18 16 7 20 20 C 1.37939 * 119.84426 * 180.29830 * 19 18 16 21 21 C 1.38379 * 120.14888 * 359.43418 * 20 19 18 22 22 S 1.76200 * 119.84571 * 180.31791 * 21 20 19 23 23 C 1.81398 * 103.00072 * 270.27431 * 22 21 20 24 24 O 1.42096 * 102.99970 * 24.12788 * 22 21 20 25 25 C 1.38381 * 120.30440 * 0.59250 * 21 20 19 26 26 C 1.37937 * 120.15153 * 359.68243 * 25 21 20 27 27 H 1.08995 * 109.47243 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47289 * 300.00473 * 1 2 3 29 29 H 1.09004 * 109.46798 * 60.00100 * 1 2 3 30 30 H 1.08996 * 109.47417 * 60.00170 * 5 3 2 31 31 H 1.09003 * 109.46756 * 299.99678 * 5 3 2 32 32 H 1.09005 * 109.46953 * 59.99584 * 6 5 3 33 33 H 1.09004 * 109.47296 * 299.99984 * 6 5 3 34 34 H 0.96999 * 119.99985 * 185.04295 * 11 10 8 35 35 H 1.07996 * 120.07822 * 0.03463 * 19 18 16 36 36 H 1.07993 * 119.92343 * 179.70352 * 20 19 18 37 37 H 1.08991 * 109.46976 * 60.00034 * 23 22 21 38 38 H 1.08998 * 109.47203 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.47310 * 299.99768 * 23 22 21 40 40 H 1.07998 * 119.92149 * 179.69983 * 25 21 20 41 41 H 1.07999 * 120.07569 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1598 2.5841 1.1554 9 1 5.8335 3.0303 2.0833 10 6 7.2876 1.7711 1.1338 11 7 7.4581 0.9103 0.1562 12 14 8.5604 1.9029 2.4948 13 1 7.9536 1.4800 3.7825 14 1 9.7151 1.0242 2.1794 15 1 9.0240 3.3095 2.6043 16 6 6.1229 3.1205 -1.1348 17 8 7.3374 3.0685 -1.1645 18 6 5.3707 3.5144 -2.3437 19 6 5.8862 4.4850 -3.2053 20 6 5.1757 4.8525 -4.3291 21 6 3.9604 4.2533 -4.6097 22 16 3.0635 4.7227 -6.0519 23 6 2.0295 6.0914 -5.4619 24 8 4.0778 5.2302 -6.9080 25 6 3.4435 3.2911 -3.7600 26 6 4.1408 2.9182 -2.6297 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.9564 0.7806 -0.8891 31 1 3.9556 0.7810 0.8909 32 1 3.6099 3.2368 0.8893 33 1 3.6107 3.2357 -0.8907 34 1 8.2058 0.2928 0.1786 35 1 6.8369 4.9500 -2.9900 36 1 5.5709 5.6064 -4.9937 37 1 2.6665 6.8918 -5.0856 38 1 1.4205 6.4673 -6.2840 39 1 1.3800 5.7372 -4.6614 40 1 2.4922 2.8309 -3.9824 41 1 3.7361 2.1675 -1.9672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871340127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:48 Heat of formation + Delta-G solvation = -120.624091 kcal Electronic energy + Delta-G solvation = -27540.256718 eV Core-core repulsion = 23512.743305 eV Total energy + Delta-G solvation = -4027.513413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.68800 -40.96789 -39.07671 -37.61574 -36.86108 -36.57782 -34.44192 -32.25357 -32.12429 -31.82135 -29.57800 -28.54282 -27.22283 -25.46979 -24.10301 -23.78537 -21.79641 -21.29215 -19.21367 -19.00354 -18.72710 -17.75774 -17.66674 -17.35224 -17.19942 -16.79345 -16.47954 -15.92353 -15.84735 -15.67022 -15.19996 -15.10754 -14.67254 -14.50580 -14.26042 -14.23048 -13.87981 -13.71314 -13.50551 -13.37477 -13.31294 -13.08859 -12.81749 -12.78035 -12.71034 -12.60230 -12.27910 -12.12914 -11.91145 -11.66759 -11.49281 -11.34348 -10.86205 -10.41769 -10.07593 -9.90578 -9.35663 -9.28898 -8.28541 -6.06171 -0.33694 0.31776 0.94916 1.20865 1.36981 1.46074 1.49284 1.70163 1.79320 2.20354 2.32396 2.75815 2.96079 3.01701 3.21001 3.75561 3.79953 3.94351 4.00466 4.06356 4.24117 4.28858 4.38242 4.43879 4.45120 4.47909 4.55534 4.60197 4.65457 4.82711 4.84336 4.95633 5.05033 5.16506 5.18669 5.23553 5.39454 5.43256 5.45776 5.84762 6.13955 6.78026 6.90075 7.05243 7.50648 8.15745 8.79465 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009189 B = 0.004429 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.450698 B = 6320.014886 C = 8872.688922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.480 3.520 4 O -0.524 6.524 5 C -0.119 4.119 6 C 0.096 3.904 7 N -0.445 5.445 8 C -0.376 4.376 9 H 0.087 0.913 10 C 0.034 3.966 11 N -0.853 5.853 12 Si 0.968 3.032 13 H -0.252 1.252 14 H -0.288 1.288 15 H -0.284 1.284 16 C 0.488 3.512 17 O -0.582 6.582 18 C -0.087 4.087 19 C -0.116 4.116 20 C -0.071 4.071 21 C -0.459 4.459 22 S 1.413 4.587 23 C -0.498 4.498 24 O -0.924 6.924 25 C -0.030 4.030 26 C -0.137 4.137 27 H 0.128 0.872 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.264 0.736 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.060 0.940 38 H 0.127 0.873 39 H 0.141 0.859 40 H 0.200 0.800 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.225 -1.016 -7.495 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.324 3.676 4 O -0.414 6.414 5 C -0.158 4.158 6 C -0.027 4.027 7 N -0.164 5.164 8 C -0.502 4.502 9 H 0.105 0.895 10 C -0.175 4.175 11 N -0.486 5.486 12 Si 0.793 3.207 13 H -0.176 1.176 14 H -0.214 1.214 15 H -0.210 1.210 16 C 0.278 3.722 17 O -0.464 6.464 18 C -0.091 4.091 19 C -0.136 4.136 20 C -0.090 4.090 21 C -0.554 4.554 22 S 1.610 4.390 23 C -0.656 4.656 24 O -0.920 6.920 25 C -0.048 4.048 26 C -0.156 4.156 27 H 0.146 0.854 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.138 0.862 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.160 0.840 40 H 0.217 0.783 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.622 -1.252 -8.477 22.332 hybrid contribution 2.763 1.790 1.937 3.820 sum -17.859 0.538 -6.540 19.027 Atomic orbital electron populations 1.23605 0.74434 1.05676 1.02999 1.86540 1.25381 1.32623 1.83639 1.23490 0.91312 0.81442 0.71393 1.90633 1.67443 1.36729 1.46550 1.21644 0.87329 1.00226 1.06566 1.22032 0.81921 0.94444 1.04331 1.43281 1.04554 1.60348 1.08246 1.19273 1.11318 1.31459 0.88189 0.89535 1.26038 0.99827 0.93131 0.98493 1.69885 1.29372 1.16278 1.33096 0.85412 0.78408 0.77602 0.79316 1.17587 1.21389 1.20991 1.18708 0.87252 0.81508 0.84729 1.90590 1.15850 1.55768 1.84166 1.20517 0.96128 0.97310 0.95114 1.21151 0.99617 0.97789 0.95080 1.20998 0.94906 0.98350 0.94711 1.28208 1.04780 1.05645 1.16790 1.68569 0.93068 1.01175 0.76215 1.27766 1.11580 1.14721 1.11526 1.92975 1.58948 1.81958 1.58110 1.21381 1.00334 0.93176 0.89933 1.22169 0.93383 1.00911 0.99159 0.85366 0.92087 0.90779 0.87683 0.87539 0.91336 0.87404 0.92701 0.87614 0.86195 0.92071 0.85504 0.84016 0.78281 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.37 -8.70 10.57 -51.37 -0.54 -9.25 16 3 C 0.48 13.37 7.93 71.24 0.56 13.94 16 4 O -0.52 -15.69 15.73 21.96 0.35 -15.34 16 5 C -0.12 -3.95 5.11 29.85 0.15 -3.80 16 6 C 0.10 3.64 4.15 86.38 0.36 3.99 16 7 N -0.44 -21.97 2.53 -638.92 -1.62 -23.59 16 8 C -0.38 -20.18 9.04 84.10 0.76 -19.42 16 9 H 0.09 4.44 7.92 -2.91 -0.02 4.42 16 10 C 0.03 1.89 4.29 84.96 0.36 2.25 16 11 N -0.85 -49.96 11.83 21.68 0.26 -49.70 16 12 Si 0.97 44.63 29.61 68.60 2.03 46.66 16 13 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 14 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 15 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 16 C 0.49 25.84 6.83 86.75 0.59 26.43 16 17 O -0.58 -36.52 14.46 -4.01 -0.06 -36.57 16 18 C -0.09 -3.70 5.45 -20.09 -0.11 -3.81 16 19 C -0.12 -4.74 9.62 22.54 0.22 -4.52 16 20 C -0.07 -2.39 9.42 22.23 0.21 -2.18 16 21 C -0.46 -11.41 5.62 22.34 0.13 -11.28 16 22 S 1.41 22.44 14.18 -56.49 -0.80 21.64 16 23 C -0.50 -6.16 10.70 113.37 1.21 -4.94 16 24 O -0.92 -28.42 16.89 -148.98 -2.52 -30.93 16 25 C -0.03 -0.66 9.73 22.23 0.22 -0.44 16 26 C -0.14 -4.40 7.38 22.54 0.17 -4.23 16 27 H 0.13 1.13 8.14 -2.39 -0.02 1.12 16 28 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 29 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 30 H 0.11 3.52 6.98 -2.39 -0.02 3.50 16 31 H 0.11 3.87 8.07 -2.39 -0.02 3.85 16 32 H 0.07 2.57 8.09 -2.38 -0.02 2.55 16 33 H 0.11 3.73 3.98 -2.38 -0.01 3.72 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.11 4.63 8.02 -2.91 -0.02 4.61 16 36 H 0.12 4.11 7.45 -2.91 -0.02 4.08 16 37 H 0.06 1.11 8.14 -2.40 -0.02 1.09 16 38 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.20 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.15 4.54 3.38 -2.91 -0.01 4.53 16 Total: -1.00 -89.54 362.03 4.19 -85.35 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.07 Total: 18.17 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 6.03 Total: -6.43 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.36 Total: -73.29 kcal Atomic # 8 Polarization: -89.32 SS G_CDS: -2.77 Total: -92.09 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 22.44 SS G_CDS: -0.80 Total: 21.64 kcal Total: -89.54 4.19 -85.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871340127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.277 kcal (2) G-P(sol) polarization free energy of solvation -89.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds