Wall clock time and date at job start Tue Mar 31 2020 22:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 116.99976 * 2 1 4 4 O 1.20820 * 120.00183 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00086 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47218 * 180.02562 * 5 3 2 7 7 N 1.46498 * 109.46803 * 179.97438 * 6 5 3 8 8 C 1.36942 * 119.99699 * 264.77041 * 7 6 5 9 9 H 1.08003 * 119.99564 * 139.03796 * 8 7 6 10 10 C 1.38956 * 120.00697 * 319.03813 * 8 7 6 11 11 N 1.31433 * 120.00473 * 160.46539 * 10 8 7 12 12 Si 1.86808 * 119.99534 * 340.46304 * 10 8 7 13 13 H 1.48499 * 109.46893 * 94.81528 * 12 10 8 14 14 H 1.48501 * 109.46925 * 214.81337 * 12 10 8 15 15 H 1.48497 * 109.47125 * 334.81031 * 12 10 8 16 16 C 1.34774 * 120.00174 * 84.77844 * 7 6 5 17 17 O 1.21836 * 119.99601 * 5.20230 * 16 7 6 18 18 C 1.41155 * 120.00049 * 185.20111 * 16 7 6 19 19 C 1.35228 * 119.99806 * 175.81591 * 18 16 7 20 20 S 1.76200 * 119.99968 * 179.97438 * 19 18 16 21 21 C 1.80998 * 100.00014 * 180.02562 * 20 19 18 22 22 C 1.50703 * 109.47163 * 180.02562 * 21 20 19 23 23 C 1.34505 * 125.79002 * 89.71418 * 22 21 20 24 24 C 1.41383 * 106.84348 * 179.88967 * 23 22 21 25 25 C 1.34513 * 106.83949 * 0.37399 * 24 23 22 26 26 O 1.34306 * 125.78804 * 270.02647 * 22 21 20 27 27 H 1.08996 * 109.47074 * 299.99736 * 1 2 3 28 28 H 1.08998 * 109.47015 * 59.99882 * 1 2 3 29 29 H 1.09004 * 109.47043 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47009 * 59.99896 * 5 3 2 31 31 H 1.09003 * 109.46823 * 300.00302 * 5 3 2 32 32 H 1.09008 * 109.46997 * 60.00081 * 6 5 3 33 33 H 1.08994 * 109.46855 * 300.00108 * 6 5 3 34 34 H 0.96997 * 120.00110 * 179.97438 * 11 10 8 35 35 H 1.08001 * 120.00437 * 355.81136 * 18 16 7 36 36 H 1.07994 * 120.00003 * 0.02562 * 19 18 16 37 37 H 1.09002 * 109.47014 * 60.00010 * 21 20 19 38 38 H 1.08991 * 109.47052 * 300.00065 * 21 20 19 39 39 H 1.08007 * 126.58044 * 0.02562 * 23 22 21 40 40 H 1.07999 * 126.58406 * 180.16161 * 24 23 22 41 41 H 1.08000 * 125.79394 * 179.74979 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8187 0.0002 8 6 6.1411 2.9618 1.1814 9 1 7.0530 2.4085 1.3510 10 6 5.6561 3.8189 2.1616 11 7 6.0548 3.6859 3.4069 12 14 4.4373 5.1605 1.7094 13 1 3.0546 4.6733 1.9463 14 1 4.6894 6.3609 2.5465 15 1 4.5991 5.5136 0.2762 16 6 6.1416 2.7485 -1.1621 17 8 5.5370 2.7168 -2.2194 18 6 7.5527 2.7116 -1.1545 19 6 8.2312 2.5559 -2.3138 20 16 9.9926 2.5106 -2.3045 21 6 10.3108 2.2929 -4.0729 22 6 11.7973 2.2248 -4.3112 23 6 12.5450 1.1068 -4.3021 24 6 13.8755 1.5016 -4.5723 25 6 13.8626 2.8383 -4.7221 26 8 12.6011 3.2710 -4.5629 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9557 0.7810 -0.8908 31 1 3.9564 0.7805 0.8892 32 1 3.6107 3.2357 0.8907 33 1 3.6100 3.2367 -0.8893 34 1 5.7165 4.2845 4.0911 35 1 8.0904 2.8078 -0.2229 36 1 7.6935 2.4603 -3.2455 37 1 9.8923 3.1352 -4.6238 38 1 9.8457 1.3683 -4.4146 39 1 12.1958 0.1003 -4.1249 40 1 14.7375 0.8545 -4.6414 41 1 14.7209 3.4585 -4.9340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871341834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:57 Heat of formation + Delta-G solvation = -70.310521 kcal Electronic energy + Delta-G solvation = -25625.927726 eV Core-core repulsion = 21600.596073 eV Total energy + Delta-G solvation = -4025.331653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.76288 -40.25905 -39.11989 -36.39568 -35.27579 -33.41611 -32.66050 -32.18604 -32.09867 -30.84830 -27.71002 -27.00065 -25.18448 -24.78106 -22.20219 -21.97269 -20.78946 -20.41610 -18.96790 -17.75986 -17.46114 -17.11949 -16.69662 -16.47710 -16.41106 -16.29355 -15.63544 -14.99761 -14.88145 -14.46428 -14.21170 -14.01340 -13.87781 -13.26915 -13.21962 -13.03654 -12.89799 -12.70058 -12.54041 -12.39817 -12.27751 -12.17307 -11.83987 -11.70212 -11.17714 -10.85182 -10.67768 -10.30106 -10.25885 -10.16532 -10.15636 -10.08830 -9.97556 -9.38920 -8.81659 -8.63465 -7.95848 -7.29300 -6.58952 -4.22795 1.03812 1.65748 1.95025 2.39852 2.48008 2.56580 2.75362 2.89791 3.10312 3.22386 3.31371 4.06635 4.16695 4.31894 4.42239 4.68057 4.80178 4.87278 4.97141 5.12043 5.14949 5.16413 5.21309 5.48791 5.50292 5.56900 5.58131 5.64256 5.69058 5.83486 5.99612 6.16872 6.25017 6.31715 6.48121 6.49838 6.61208 6.76420 6.89115 7.22921 7.93387 7.98857 8.11009 8.81927 9.18338 9.51709 10.49910 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.002411 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.588347 B =11608.958894 C =12947.472360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.468 3.532 4 O -0.510 6.510 5 C -0.122 4.122 6 C 0.113 3.887 7 N -0.451 5.451 8 C -0.352 4.352 9 H 0.110 0.890 10 C 0.073 3.927 11 N -0.851 5.851 12 Si 0.868 3.132 13 H -0.267 1.267 14 H -0.284 1.284 15 H -0.258 1.258 16 C 0.513 3.487 17 O -0.602 6.602 18 C -0.131 4.131 19 C -0.132 4.132 20 S -0.097 6.097 21 C -0.037 4.037 22 C -0.002 4.002 23 C -0.187 4.187 24 C -0.215 4.215 25 C -0.033 4.033 26 O -0.170 6.170 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.278 0.722 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.680 -6.365 -11.253 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.398 6.398 5 C -0.161 4.161 6 C -0.010 4.010 7 N -0.170 5.170 8 C -0.479 4.479 9 H 0.127 0.873 10 C -0.136 4.136 11 N -0.485 5.485 12 Si 0.694 3.306 13 H -0.194 1.194 14 H -0.211 1.211 15 H -0.182 1.182 16 C 0.304 3.696 17 O -0.490 6.490 18 C -0.163 4.163 19 C -0.266 4.266 20 S 0.146 5.854 21 C -0.185 4.185 22 C -0.053 4.053 23 C -0.209 4.209 24 C -0.235 4.235 25 C -0.102 4.102 26 O -0.066 6.066 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 6.849 -5.623 -10.691 13.886 hybrid contribution -1.591 0.488 -0.813 1.852 sum 5.258 -5.136 -11.503 13.651 Atomic orbital electron populations 1.23206 0.77054 1.03262 1.02411 1.86533 1.22964 1.33979 1.84427 1.23984 0.92280 0.81037 0.71625 1.90648 1.67363 1.36332 1.45443 1.21792 0.86223 1.01662 1.06418 1.21421 0.83113 0.93285 1.03218 1.43646 1.03861 1.63029 1.06451 1.19090 1.10940 1.26874 0.90986 0.87271 1.25375 0.96935 0.96663 0.94631 1.69736 1.42617 1.36089 1.00052 0.87031 0.81232 0.82091 0.80240 1.19370 1.21057 1.18191 1.16880 0.87936 0.81232 0.83548 1.90701 1.71127 1.56354 1.30853 1.21767 0.95105 1.01194 0.98222 1.25455 0.95207 1.03795 1.02140 1.86129 1.02061 1.90907 1.06271 1.21927 0.90237 1.07750 0.98553 1.21391 0.91965 0.85510 1.06403 1.21647 0.93155 0.99433 1.06639 1.21852 0.98201 0.95402 1.08004 1.24098 0.85213 0.95543 1.05380 1.84036 1.17797 1.35798 1.69007 0.92046 0.92106 0.88395 0.87444 0.86695 0.90203 0.90265 0.91178 0.84288 0.84231 0.87583 0.86459 0.83014 0.83225 0.77908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.59 10.56 -39.25 -0.41 -6.01 16 3 C 0.47 8.49 7.96 36.01 0.29 8.77 16 4 O -0.51 -10.52 15.73 -18.75 -0.29 -10.82 16 5 C -0.12 -2.28 6.10 -27.88 -0.17 -2.45 16 6 C 0.11 2.52 3.28 -4.04 -0.01 2.51 16 7 N -0.45 -10.55 2.13 -118.19 -0.25 -10.81 16 8 C -0.35 -8.78 8.83 -15.00 -0.13 -8.92 16 9 H 0.11 2.80 6.94 -52.48 -0.36 2.44 16 10 C 0.07 1.88 5.30 -17.46 -0.09 1.79 16 11 N -0.85 -22.75 13.96 55.50 0.77 -21.98 16 12 Si 0.87 20.64 25.04 -169.99 -4.26 16.38 16 13 H -0.27 -6.33 6.71 56.52 0.38 -5.95 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.51 11.66 7.35 -15.15 -0.11 11.55 16 17 O -0.60 -14.54 15.74 5.07 0.08 -14.46 16 18 C -0.13 -2.62 8.85 -39.55 -0.35 -2.97 16 19 C -0.13 -2.22 9.53 29.66 0.28 -1.94 16 20 S -0.10 -1.39 22.02 -107.50 -2.37 -3.76 16 21 C -0.04 -0.41 6.20 36.01 0.22 -0.19 16 22 C 0.00 -0.02 6.58 -35.63 -0.23 -0.25 16 23 C -0.19 -1.92 10.81 -39.71 -0.43 -2.35 16 24 C -0.22 -1.93 10.91 -39.70 -0.43 -2.37 16 25 C -0.03 -0.29 12.09 29.42 0.36 0.06 16 26 O -0.17 -2.00 10.65 5.69 0.06 -1.94 16 27 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 31 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 32 H 0.08 1.87 3.74 -51.92 -0.19 1.68 16 33 H 0.08 1.82 7.47 -51.93 -0.39 1.43 16 34 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.14 2.82 6.40 -52.49 -0.34 2.48 16 36 H 0.14 2.29 7.42 -52.49 -0.39 1.90 16 37 H 0.11 1.09 8.14 -51.92 -0.42 0.67 16 38 H 0.12 1.07 8.14 -51.92 -0.42 0.65 16 39 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 40 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -31.36 372.51 -5.86 -37.22 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.06 Total: 5.83 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 0.25 Total: 4.71 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.52 Total: -32.79 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.57 Total: -33.22 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.26 Total: 16.38 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.37 Total: -3.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.36 -5.86 -37.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.087 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds