Wall clock time and date at job start Tue Mar 31 2020 22:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 116.99976 * 2 1 4 4 O 1.20820 * 120.00183 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00086 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47218 * 180.02562 * 5 3 2 7 7 N 1.46498 * 109.46803 * 179.97438 * 6 5 3 8 8 C 1.36942 * 119.99699 * 264.77041 * 7 6 5 9 9 H 1.08003 * 119.99564 * 139.03796 * 8 7 6 10 10 C 1.38956 * 120.00697 * 319.03813 * 8 7 6 11 11 N 1.31433 * 120.00473 * 160.46539 * 10 8 7 12 12 Si 1.86808 * 119.99534 * 340.46304 * 10 8 7 13 13 H 1.48499 * 109.46893 * 94.81528 * 12 10 8 14 14 H 1.48501 * 109.46925 * 214.81337 * 12 10 8 15 15 H 1.48497 * 109.47125 * 334.81031 * 12 10 8 16 16 C 1.34774 * 120.00174 * 84.77844 * 7 6 5 17 17 O 1.21836 * 119.99601 * 5.20230 * 16 7 6 18 18 C 1.41155 * 120.00049 * 185.20111 * 16 7 6 19 19 C 1.35228 * 119.99806 * 175.81591 * 18 16 7 20 20 S 1.76200 * 119.99968 * 179.97438 * 19 18 16 21 21 C 1.80998 * 100.00014 * 180.02562 * 20 19 18 22 22 C 1.50703 * 109.47163 * 180.02562 * 21 20 19 23 23 C 1.34505 * 125.79002 * 89.71418 * 22 21 20 24 24 C 1.41383 * 106.84348 * 179.88967 * 23 22 21 25 25 C 1.34513 * 106.83949 * 0.37399 * 24 23 22 26 26 O 1.34306 * 125.78804 * 270.02647 * 22 21 20 27 27 H 1.08996 * 109.47074 * 299.99736 * 1 2 3 28 28 H 1.08998 * 109.47015 * 59.99882 * 1 2 3 29 29 H 1.09004 * 109.47043 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47009 * 59.99896 * 5 3 2 31 31 H 1.09003 * 109.46823 * 300.00302 * 5 3 2 32 32 H 1.09008 * 109.46997 * 60.00081 * 6 5 3 33 33 H 1.08994 * 109.46855 * 300.00108 * 6 5 3 34 34 H 0.96997 * 120.00110 * 179.97438 * 11 10 8 35 35 H 1.08001 * 120.00437 * 355.81136 * 18 16 7 36 36 H 1.07994 * 120.00003 * 0.02562 * 19 18 16 37 37 H 1.09002 * 109.47014 * 60.00010 * 21 20 19 38 38 H 1.08991 * 109.47052 * 300.00065 * 21 20 19 39 39 H 1.08007 * 126.58044 * 0.02562 * 23 22 21 40 40 H 1.07999 * 126.58406 * 180.16161 * 24 23 22 41 41 H 1.08000 * 125.79394 * 179.74979 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8187 0.0002 8 6 6.1411 2.9618 1.1814 9 1 7.0530 2.4085 1.3510 10 6 5.6561 3.8189 2.1616 11 7 6.0548 3.6859 3.4069 12 14 4.4373 5.1605 1.7094 13 1 3.0546 4.6733 1.9463 14 1 4.6894 6.3609 2.5465 15 1 4.5991 5.5136 0.2762 16 6 6.1416 2.7485 -1.1621 17 8 5.5370 2.7168 -2.2194 18 6 7.5527 2.7116 -1.1545 19 6 8.2312 2.5559 -2.3138 20 16 9.9926 2.5106 -2.3045 21 6 10.3108 2.2929 -4.0729 22 6 11.7973 2.2248 -4.3112 23 6 12.5450 1.1068 -4.3021 24 6 13.8755 1.5016 -4.5723 25 6 13.8626 2.8383 -4.7221 26 8 12.6011 3.2710 -4.5629 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9557 0.7810 -0.8908 31 1 3.9564 0.7805 0.8892 32 1 3.6107 3.2357 0.8907 33 1 3.6100 3.2367 -0.8893 34 1 5.7165 4.2845 4.0911 35 1 8.0904 2.8078 -0.2229 36 1 7.6935 2.4603 -3.2455 37 1 9.8923 3.1352 -4.6238 38 1 9.8457 1.3683 -4.4146 39 1 12.1958 0.1003 -4.1249 40 1 14.7375 0.8545 -4.6414 41 1 14.7209 3.4585 -4.9340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:55 Heat of formation + Delta-G solvation = -88.201133 kcal Electronic energy + Delta-G solvation = -25626.703522 eV Core-core repulsion = 21600.596073 eV Total energy + Delta-G solvation = -4026.107448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.51574 -41.69049 -40.84698 -37.78526 -37.04734 -34.40494 -34.19849 -33.85054 -32.95893 -32.44660 -28.84287 -27.82922 -27.03263 -26.31051 -23.71007 -22.71163 -21.92766 -21.55743 -20.72618 -19.12916 -18.77369 -18.47885 -18.12744 -17.86229 -17.67653 -17.46037 -16.97459 -16.51628 -16.17048 -15.82613 -15.65518 -15.37393 -14.99244 -14.71363 -14.51194 -14.43937 -14.06526 -13.98400 -13.75611 -13.74179 -13.54072 -13.36002 -13.09243 -13.04311 -12.90756 -12.66475 -12.08804 -11.90607 -11.80745 -11.69278 -11.55503 -11.44587 -11.26204 -10.86208 -10.65830 -9.83019 -9.42049 -8.57507 -8.56921 -6.20642 0.04902 0.12550 1.00469 1.05050 1.19172 1.28629 1.30807 1.38061 1.60453 1.78835 2.02534 2.12798 2.38686 2.73714 2.97112 3.56250 3.69607 3.84768 3.93663 4.05372 4.11318 4.13639 4.28920 4.29209 4.30109 4.36653 4.38316 4.54542 4.66342 4.68250 4.83499 4.88442 4.99958 5.01021 5.14540 5.19576 5.25278 5.39641 5.57380 6.02746 6.15086 6.16860 6.61227 6.89036 7.31718 7.67798 8.55797 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.002411 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.588347 B =11608.958894 C =12947.472360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.359 6.359 3 C 0.475 3.525 4 O -0.540 6.540 5 C -0.115 4.115 6 C 0.113 3.887 7 N -0.465 5.465 8 C -0.340 4.340 9 H 0.097 0.903 10 C 0.044 3.956 11 N -0.885 5.885 12 Si 0.908 3.092 13 H -0.268 1.268 14 H -0.277 1.277 15 H -0.272 1.272 16 C 0.518 3.482 17 O -0.620 6.620 18 C -0.178 4.178 19 C -0.087 4.087 20 S -0.100 6.100 21 C -0.029 4.029 22 C -0.032 4.032 23 C -0.186 4.186 24 C -0.228 4.228 25 C -0.029 4.029 26 O -0.192 6.192 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.138 0.862 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.281 0.719 35 H 0.130 0.870 36 H 0.148 0.852 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.165 0.835 40 H 0.173 0.827 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 -7.500 -13.011 16.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.319 3.681 4 O -0.430 6.430 5 C -0.153 4.153 6 C -0.011 4.011 7 N -0.185 5.185 8 C -0.468 4.468 9 H 0.114 0.886 10 C -0.162 4.162 11 N -0.521 5.521 12 Si 0.734 3.266 13 H -0.194 1.194 14 H -0.204 1.204 15 H -0.197 1.197 16 C 0.311 3.689 17 O -0.510 6.510 18 C -0.211 4.211 19 C -0.221 4.221 20 S 0.146 5.854 21 C -0.176 4.176 22 C -0.082 4.082 23 C -0.209 4.209 24 C -0.246 4.246 25 C -0.098 4.098 26 O -0.089 6.089 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.156 0.844 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.148 0.852 36 H 0.165 0.835 37 H 0.133 0.867 38 H 0.157 0.843 39 H 0.182 0.818 40 H 0.191 0.809 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 7.949 -6.780 -12.447 16.250 hybrid contribution -1.712 0.730 -0.528 1.935 sum 6.237 -6.050 -12.975 15.616 Atomic orbital electron populations 1.23614 0.74556 1.06005 1.02560 1.86506 1.25296 1.32095 1.83649 1.23742 0.91964 0.81413 0.70986 1.90637 1.67886 1.37455 1.47028 1.21615 0.87151 0.99309 1.07248 1.21335 0.82519 0.95462 1.01761 1.43671 1.04256 1.64301 1.06225 1.18966 1.10511 1.26065 0.91232 0.88566 1.25720 0.98096 0.97750 0.94664 1.69768 1.44364 1.37300 1.00634 0.86411 0.80135 0.80964 0.79043 1.19423 1.20356 1.19667 1.17241 0.88971 0.79732 0.82969 1.90671 1.71843 1.57220 1.31237 1.21479 0.93780 1.06702 0.99120 1.25695 0.97066 0.98141 1.01239 1.86282 0.99245 1.89612 1.10298 1.22032 0.90845 1.09321 0.95421 1.21446 0.92132 0.85988 1.08671 1.22004 0.93827 0.99783 1.05238 1.22227 0.98463 0.95960 1.08000 1.24924 0.85025 0.96294 1.03529 1.84024 1.18948 1.36413 1.69511 0.92079 0.91879 0.84365 0.86452 0.85961 0.91658 0.91553 0.90842 0.85180 0.83467 0.86740 0.84263 0.81790 0.80904 0.74419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -10.57 10.56 -51.40 -0.54 -11.11 16 3 C 0.47 17.03 7.96 71.24 0.57 17.60 16 4 O -0.54 -22.30 15.73 21.98 0.35 -21.96 16 5 C -0.11 -4.27 6.10 29.85 0.18 -4.09 16 6 C 0.11 5.10 3.28 86.38 0.28 5.39 16 7 N -0.46 -22.21 2.13 -645.99 -1.37 -23.58 16 8 C -0.34 -17.42 8.83 84.07 0.74 -16.68 16 9 H 0.10 5.12 6.94 -2.91 -0.02 5.10 16 10 C 0.04 2.29 5.30 84.92 0.45 2.74 16 11 N -0.88 -48.21 13.96 21.67 0.30 -47.91 16 12 Si 0.91 43.46 25.04 68.60 1.72 45.18 16 13 H -0.27 -12.73 6.71 99.48 0.67 -12.06 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 15 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 16 C 0.52 23.86 7.35 84.96 0.62 24.48 16 17 O -0.62 -30.02 15.74 -4.78 -0.08 -30.10 16 18 C -0.18 -7.17 8.85 22.29 0.20 -6.98 16 19 C -0.09 -2.83 9.53 67.13 0.64 -2.20 16 20 S -0.10 -2.72 22.02 -56.49 -1.24 -3.96 16 21 C -0.03 -0.58 6.20 71.24 0.44 -0.14 16 22 C -0.03 -0.66 6.58 24.83 0.16 -0.50 16 23 C -0.19 -3.39 10.81 22.19 0.24 -3.15 16 24 C -0.23 -3.44 10.91 22.19 0.24 -3.20 16 25 C -0.03 -0.44 12.09 66.97 0.81 0.37 16 26 O -0.19 -4.12 10.65 -2.55 -0.03 -4.15 16 27 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 28 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 29 H 0.14 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 31 H 0.12 4.36 8.14 -2.39 -0.02 4.34 16 32 H 0.07 3.12 3.74 -2.38 -0.01 3.12 16 33 H 0.07 3.13 7.47 -2.39 -0.02 3.11 16 34 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.13 5.44 6.40 -2.91 -0.02 5.42 16 36 H 0.15 4.58 7.42 -2.91 -0.02 4.56 16 37 H 0.11 2.10 8.14 -2.39 -0.02 2.09 16 38 H 0.14 2.15 8.14 -2.40 -0.02 2.13 16 39 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 41 H 0.24 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -68.58 372.51 6.90 -61.68 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 1.02 Total: 20.51 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 6.78 Total: 15.39 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -1.07 Total: -71.49 kcal Atomic # 8 Polarization: -67.01 SS G_CDS: -0.30 Total: -67.31 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.72 Total: 45.18 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -1.24 Total: -3.96 kcal Total: -68.58 6.90 -61.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.521 kcal (2) G-P(sol) polarization free energy of solvation -68.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds