Wall clock time and date at job start Tue Mar 31 2020 22:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34235 * 116.99998 * 2 1 4 4 O 1.20825 * 119.99861 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99912 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47367 * 179.97438 * 5 3 2 7 7 N 1.46499 * 109.47402 * 179.97438 * 6 5 3 8 8 C 1.36943 * 119.99997 * 274.41435 * 7 6 5 9 9 H 1.07996 * 119.99811 * 134.05800 * 8 7 6 10 10 C 1.38960 * 119.99700 * 314.06118 * 8 7 6 11 11 N 1.31435 * 120.00383 * 3.51281 * 10 8 7 12 12 Si 1.86799 * 119.99712 * 183.51904 * 10 8 7 13 13 H 1.48498 * 109.47432 * 89.99529 * 12 10 8 14 14 H 1.48503 * 109.46823 * 209.99880 * 12 10 8 15 15 H 1.48509 * 109.47093 * 329.99446 * 12 10 8 16 16 C 1.34774 * 120.00170 * 94.41226 * 7 6 5 17 17 O 1.21844 * 119.99754 * 4.70207 * 16 7 6 18 18 C 1.41158 * 120.00129 * 184.70024 * 16 7 6 19 19 C 1.35228 * 120.00016 * 175.38949 * 18 16 7 20 20 S 1.76199 * 120.00011 * 359.97438 * 19 18 16 21 21 C 1.80994 * 100.00085 * 180.02562 * 20 19 18 22 22 C 1.50703 * 109.47174 * 179.97438 * 21 20 19 23 23 C 1.34511 * 125.78465 * 90.00632 * 22 21 20 24 24 C 1.41386 * 106.83946 * 180.02562 * 23 22 21 25 25 C 1.34512 * 106.83729 * 359.97438 * 24 23 22 26 26 O 1.34297 * 108.42611 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47410 * 300.00837 * 1 2 3 28 28 H 1.09001 * 109.46743 * 60.00238 * 1 2 3 29 29 H 1.09000 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47444 * 59.99363 * 5 3 2 31 31 H 1.09007 * 109.47318 * 299.99465 * 5 3 2 32 32 H 1.09002 * 109.47104 * 59.99467 * 6 5 3 33 33 H 1.08997 * 109.46763 * 300.00133 * 6 5 3 34 34 H 0.96999 * 120.00335 * 180.02562 * 11 10 8 35 35 H 1.08000 * 120.00113 * 355.38458 * 18 16 7 36 36 H 1.07998 * 119.99763 * 179.97438 * 19 18 16 37 37 H 1.09009 * 109.47168 * 59.99743 * 21 20 19 38 38 H 1.08996 * 109.47372 * 300.00062 * 21 20 19 39 39 H 1.08002 * 126.58512 * 0.04939 * 23 22 21 40 40 H 1.07998 * 126.57857 * 180.02562 * 24 23 22 41 41 H 1.07998 * 125.78661 * 180.26628 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 7 5.4632 2.8188 -0.0011 8 6 6.1516 2.7639 1.1815 9 1 7.0194 2.1273 1.2720 10 6 5.7337 3.5272 2.2648 11 7 4.6385 4.2485 2.1770 12 14 6.7285 3.5281 3.8459 13 1 7.7431 4.6110 3.7917 14 1 5.8227 3.7557 5.0004 15 1 7.4104 2.2182 4.0024 16 6 6.1315 2.9433 -1.1648 17 8 5.5175 3.0782 -2.2085 18 6 7.5428 2.9173 -1.1744 19 6 8.2116 2.9484 -2.3493 20 16 7.3214 3.0204 -3.8682 21 6 8.7004 3.0376 -5.0403 22 6 8.1633 3.0983 -6.4470 23 6 7.9031 4.2203 -7.1418 24 6 7.4175 3.8156 -8.4065 25 6 7.4106 2.4705 -8.4090 26 8 7.8631 2.0415 -7.2195 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 3.6107 3.2365 0.8889 33 1 3.6101 3.2359 -0.8910 34 1 4.3469 4.7816 2.9331 35 1 8.0885 2.8728 -0.2435 36 1 9.2914 2.9290 -2.3567 37 1 9.2934 2.1313 -4.9169 38 1 9.3265 3.9097 -4.8520 39 1 8.0393 5.2356 -6.7996 40 1 7.1116 4.4623 -9.2155 41 1 7.0981 1.8420 -9.2298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871341835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:00 Heat of formation + Delta-G solvation = -72.171441 kcal Electronic energy + Delta-G solvation = -26095.853895 eV Core-core repulsion = 22070.441546 eV Total energy + Delta-G solvation = -4025.412349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.51832 -39.99928 -38.87915 -36.16285 -35.14162 -33.14686 -32.37308 -31.94096 -31.74814 -30.52929 -27.51479 -26.69198 -25.16256 -24.39090 -21.82449 -21.73466 -20.57085 -19.97365 -19.16533 -17.65775 -17.22207 -17.14047 -16.32077 -16.18389 -16.11804 -15.99036 -15.10860 -14.81756 -14.60399 -14.21538 -13.95309 -13.77414 -13.69124 -13.33271 -13.05057 -12.82371 -12.74059 -12.43485 -12.22620 -12.10579 -12.00301 -11.75546 -11.56270 -11.25027 -11.04176 -10.72655 -10.49330 -10.43134 -10.19356 -9.99360 -9.95175 -9.90507 -9.81214 -9.16411 -8.62117 -8.03570 -7.67966 -6.90584 -6.34684 -4.29396 1.44165 1.80755 2.26777 2.73175 2.74949 2.97031 3.02836 3.07596 3.12629 3.16390 3.17301 3.99620 4.37201 4.62998 4.82423 4.93297 4.94471 5.02845 5.22718 5.27600 5.34453 5.35431 5.44747 5.59015 5.68862 5.79957 5.90102 5.92681 6.01774 6.08816 6.32828 6.35512 6.49083 6.63392 6.69915 6.80153 7.02203 7.13619 7.23840 7.62379 7.90741 8.24397 8.29117 8.95755 9.34557 9.79456 10.56600 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009559 B = 0.003161 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.563853 B = 8856.633224 C =11245.663971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.467 3.533 4 O -0.504 6.504 5 C -0.120 4.120 6 C 0.108 3.892 7 N -0.427 5.427 8 C -0.343 4.343 9 H 0.091 0.909 10 C 0.047 3.953 11 N -0.860 5.860 12 Si 0.922 3.078 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.268 1.268 16 C 0.491 3.509 17 O -0.572 6.572 18 C -0.149 4.149 19 C -0.154 4.154 20 S 0.040 5.960 21 C -0.118 4.118 22 C 0.018 3.982 23 C -0.202 4.202 24 C -0.213 4.213 25 C -0.045 4.045 26 O -0.173 6.173 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.065 0.935 34 H 0.273 0.727 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 -5.221 -9.835 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.309 3.691 4 O -0.391 6.391 5 C -0.159 4.159 6 C -0.016 4.016 7 N -0.144 5.144 8 C -0.471 4.471 9 H 0.109 0.891 10 C -0.159 4.159 11 N -0.496 5.496 12 Si 0.748 3.252 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.192 1.192 16 C 0.284 3.716 17 O -0.462 6.462 18 C -0.183 4.183 19 C -0.289 4.289 20 S 0.282 5.718 21 C -0.263 4.263 22 C -0.033 4.033 23 C -0.223 4.223 24 C -0.232 4.232 25 C -0.113 4.113 26 O -0.069 6.069 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.154 0.846 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.284 -4.992 -10.385 11.747 hybrid contribution 1.651 0.198 1.191 2.045 sum 3.935 -4.794 -9.195 11.091 Atomic orbital electron populations 1.23155 0.77474 1.02951 1.02311 1.86541 1.22673 1.34526 1.84731 1.24085 0.92411 0.80841 0.71727 1.90647 1.67250 1.36215 1.44967 1.21852 0.85720 1.03445 1.04845 1.21631 0.82319 0.91110 1.06556 1.43221 1.04752 1.61568 1.04859 1.19421 1.12696 1.25977 0.89028 0.89108 1.25631 0.95988 0.94217 1.00095 1.69560 1.20947 1.26899 1.32191 0.86018 0.79544 0.78994 0.80693 1.20004 1.20734 1.19245 1.17278 0.88278 0.81437 0.84649 1.90488 1.68472 1.55907 1.31298 1.21857 0.95668 1.03331 0.97463 1.25786 1.01775 1.04181 0.97190 1.88124 1.01895 1.89019 0.92733 1.22712 1.04823 1.06216 0.92591 1.21475 1.04026 0.84936 0.92885 1.21573 1.06687 0.99241 0.94832 1.21812 1.07059 0.95145 0.99192 1.23990 1.04110 0.95466 0.87734 1.84013 1.64264 1.35501 1.23167 0.92183 0.92220 0.88692 0.89022 0.87769 0.84648 0.91649 0.91576 0.83996 0.84975 0.88917 0.87696 0.83326 0.83493 0.78186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.37 -6.16 10.57 -39.27 -0.41 -6.58 16 3 C 0.47 9.19 7.96 36.00 0.29 9.48 16 4 O -0.50 -11.23 15.73 -18.75 -0.29 -11.53 16 5 C -0.12 -2.42 6.12 -27.88 -0.17 -2.59 16 6 C 0.11 2.59 4.44 -4.04 -0.02 2.57 16 7 N -0.43 -10.37 2.52 -118.18 -0.30 -10.66 16 8 C -0.34 -8.15 8.19 -15.00 -0.12 -8.28 16 9 H 0.09 2.01 6.98 -52.49 -0.37 1.64 16 10 C 0.05 1.14 5.40 -17.45 -0.09 1.04 16 11 N -0.86 -22.18 10.74 55.50 0.60 -21.58 16 12 Si 0.92 18.49 29.55 -169.99 -5.02 13.47 16 13 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 14 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 15 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 16 C 0.49 11.58 7.36 -15.15 -0.11 11.47 16 17 O -0.57 -14.47 12.85 5.06 0.07 -14.40 16 18 C -0.15 -2.94 9.17 -39.55 -0.36 -3.30 16 19 C -0.15 -2.59 10.09 29.66 0.30 -2.29 16 20 S 0.04 0.71 18.60 -107.50 -2.00 -1.29 16 21 C -0.12 -1.57 6.20 36.01 0.22 -1.35 16 22 C 0.02 0.25 6.58 -35.62 -0.23 0.02 16 23 C -0.20 -2.64 10.81 -39.70 -0.43 -3.07 16 24 C -0.21 -2.45 10.91 -39.70 -0.43 -2.88 16 25 C -0.04 -0.50 12.09 29.42 0.36 -0.14 16 26 O -0.17 -2.45 10.65 5.73 0.06 -2.39 16 27 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 28 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 32 H 0.14 3.57 5.11 -51.93 -0.27 3.30 16 33 H 0.07 1.69 7.20 -51.93 -0.37 1.32 16 34 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.14 2.60 6.52 -52.49 -0.34 2.26 16 36 H 0.13 1.70 8.03 -52.49 -0.42 1.28 16 37 H 0.09 1.11 8.14 -51.91 -0.42 0.69 16 38 H 0.10 1.19 8.14 -51.92 -0.42 0.77 16 39 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 371.71 15.07 5.60 5.60 Total: -1.00 -30.96 371.71 -6.58 -37.54 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.13 Total: 9.63 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 0.25 Total: 2.20 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.30 Total: -32.25 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.58 Total: -34.90 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.00 Total: -1.29 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.96 -6.58 -37.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.631 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds