Wall clock time and date at job start Tue Mar 31 2020 22:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34235 * 116.99998 * 2 1 4 4 O 1.20825 * 119.99861 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99912 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47367 * 179.97438 * 5 3 2 7 7 N 1.46499 * 109.47402 * 179.97438 * 6 5 3 8 8 C 1.36943 * 119.99997 * 274.41435 * 7 6 5 9 9 H 1.07996 * 119.99811 * 134.05800 * 8 7 6 10 10 C 1.38960 * 119.99700 * 314.06118 * 8 7 6 11 11 N 1.31435 * 120.00383 * 3.51281 * 10 8 7 12 12 Si 1.86799 * 119.99712 * 183.51904 * 10 8 7 13 13 H 1.48498 * 109.47432 * 89.99529 * 12 10 8 14 14 H 1.48503 * 109.46823 * 209.99880 * 12 10 8 15 15 H 1.48509 * 109.47093 * 329.99446 * 12 10 8 16 16 C 1.34774 * 120.00170 * 94.41226 * 7 6 5 17 17 O 1.21844 * 119.99754 * 4.70207 * 16 7 6 18 18 C 1.41158 * 120.00129 * 184.70024 * 16 7 6 19 19 C 1.35228 * 120.00016 * 175.38949 * 18 16 7 20 20 S 1.76199 * 120.00011 * 359.97438 * 19 18 16 21 21 C 1.80994 * 100.00085 * 180.02562 * 20 19 18 22 22 C 1.50703 * 109.47174 * 179.97438 * 21 20 19 23 23 C 1.34511 * 125.78465 * 90.00632 * 22 21 20 24 24 C 1.41386 * 106.83946 * 180.02562 * 23 22 21 25 25 C 1.34512 * 106.83729 * 359.97438 * 24 23 22 26 26 O 1.34297 * 108.42611 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47410 * 300.00837 * 1 2 3 28 28 H 1.09001 * 109.46743 * 60.00238 * 1 2 3 29 29 H 1.09000 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47444 * 59.99363 * 5 3 2 31 31 H 1.09007 * 109.47318 * 299.99465 * 5 3 2 32 32 H 1.09002 * 109.47104 * 59.99467 * 6 5 3 33 33 H 1.08997 * 109.46763 * 300.00133 * 6 5 3 34 34 H 0.96999 * 120.00335 * 180.02562 * 11 10 8 35 35 H 1.08000 * 120.00113 * 355.38458 * 18 16 7 36 36 H 1.07998 * 119.99763 * 179.97438 * 19 18 16 37 37 H 1.09009 * 109.47168 * 59.99743 * 21 20 19 38 38 H 1.08996 * 109.47372 * 300.00062 * 21 20 19 39 39 H 1.08002 * 126.58512 * 0.04939 * 23 22 21 40 40 H 1.07998 * 126.57857 * 180.02562 * 24 23 22 41 41 H 1.07998 * 125.78661 * 180.26628 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 7 5.4632 2.8188 -0.0011 8 6 6.1516 2.7639 1.1815 9 1 7.0194 2.1273 1.2720 10 6 5.7337 3.5272 2.2648 11 7 4.6385 4.2485 2.1770 12 14 6.7285 3.5281 3.8459 13 1 7.7431 4.6110 3.7917 14 1 5.8227 3.7557 5.0004 15 1 7.4104 2.2182 4.0024 16 6 6.1315 2.9433 -1.1648 17 8 5.5175 3.0782 -2.2085 18 6 7.5428 2.9173 -1.1744 19 6 8.2116 2.9484 -2.3493 20 16 7.3214 3.0204 -3.8682 21 6 8.7004 3.0376 -5.0403 22 6 8.1633 3.0983 -6.4470 23 6 7.9031 4.2203 -7.1418 24 6 7.4175 3.8156 -8.4065 25 6 7.4106 2.4705 -8.4090 26 8 7.8631 2.0415 -7.2195 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 3.6107 3.2365 0.8889 33 1 3.6101 3.2359 -0.8910 34 1 4.3469 4.7816 2.9331 35 1 8.0885 2.8728 -0.2435 36 1 9.2914 2.9290 -2.3567 37 1 9.2934 2.1313 -4.9169 38 1 9.3265 3.9097 -4.8520 39 1 8.0393 5.2356 -6.7996 40 1 7.1116 4.4623 -9.2155 41 1 7.0981 1.8420 -9.2298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:58 Heat of formation + Delta-G solvation = -89.394507 kcal Electronic energy + Delta-G solvation = -26096.600743 eV Core-core repulsion = 22070.441546 eV Total energy + Delta-G solvation = -4026.159197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.47335 -41.55317 -40.60784 -37.68013 -36.91129 -34.13271 -33.99124 -33.60315 -32.80720 -32.19736 -28.76037 -27.70027 -26.96190 -25.95742 -23.35505 -22.68483 -21.73905 -21.46248 -20.83023 -19.17167 -18.78255 -18.25286 -17.85973 -17.61758 -17.54242 -17.30483 -16.64410 -16.40265 -15.68118 -15.63865 -15.55816 -15.30848 -14.83052 -14.80507 -14.42262 -14.01292 -13.79394 -13.74756 -13.70047 -13.59124 -13.23864 -13.06564 -13.02714 -12.82729 -12.67665 -12.38043 -12.02227 -11.88172 -11.75124 -11.67858 -11.55063 -11.27160 -10.94034 -10.83984 -10.04452 -9.49610 -9.22231 -8.40342 -8.12682 -6.15636 0.30667 0.33162 1.14514 1.19664 1.51450 1.51697 1.61025 1.64079 1.72046 1.88220 2.09340 2.33400 2.65427 3.14726 3.19058 3.69778 3.87997 4.05267 4.13227 4.14851 4.23932 4.30792 4.31678 4.32759 4.36471 4.46701 4.62565 4.69874 4.81264 4.91412 5.00971 5.02867 5.16206 5.19435 5.29401 5.33532 5.40035 5.59647 5.72013 6.11007 6.18589 6.45600 6.71616 7.14021 7.56786 8.01814 8.77446 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009559 B = 0.003161 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.563853 B = 8856.633224 C =11245.663971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.109 4.109 6 C 0.114 3.886 7 N -0.445 5.445 8 C -0.347 4.347 9 H 0.108 0.892 10 C 0.000 4.000 11 N -0.902 5.902 12 Si 0.991 3.009 13 H -0.273 1.273 14 H -0.289 1.289 15 H -0.251 1.251 16 C 0.482 3.518 17 O -0.603 6.603 18 C -0.189 4.189 19 C -0.108 4.108 20 S -0.033 6.033 21 C -0.092 4.092 22 C -0.015 4.015 23 C -0.207 4.207 24 C -0.227 4.227 25 C -0.039 4.039 26 O -0.193 6.193 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.139 0.861 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.031 0.969 34 H 0.270 0.730 35 H 0.155 0.845 36 H 0.180 0.820 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.157 0.843 40 H 0.172 0.828 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.095 -6.599 -10.742 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.148 4.148 6 C -0.010 4.010 7 N -0.162 5.162 8 C -0.475 4.475 9 H 0.125 0.875 10 C -0.202 4.202 11 N -0.539 5.539 12 Si 0.815 3.185 13 H -0.198 1.198 14 H -0.215 1.215 15 H -0.174 1.174 16 C 0.276 3.724 17 O -0.494 6.494 18 C -0.223 4.223 19 C -0.243 4.243 20 S 0.211 5.789 21 C -0.238 4.238 22 C -0.065 4.065 23 C -0.229 4.229 24 C -0.246 4.246 25 C -0.107 4.107 26 O -0.090 6.090 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.157 0.843 30 H 0.116 0.884 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.173 0.827 36 H 0.198 0.802 37 H 0.128 0.872 38 H 0.147 0.853 39 H 0.175 0.825 40 H 0.189 0.811 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 4.335 -6.406 -11.296 13.691 hybrid contribution 1.004 0.605 1.140 1.635 sum 5.339 -5.802 -10.156 12.857 Atomic orbital electron populations 1.23576 0.74843 1.05856 1.02400 1.86508 1.25130 1.32411 1.83919 1.23872 0.92165 0.81244 0.71008 1.90634 1.67839 1.37509 1.46670 1.21617 0.86621 1.00990 1.05530 1.21324 0.83027 0.93063 1.03586 1.43429 1.04559 1.62656 1.05589 1.19811 1.12836 1.25945 0.88869 0.87471 1.26511 0.96657 0.93715 1.03329 1.69740 1.22839 1.28318 1.33022 0.84952 0.77766 0.79584 0.76241 1.19836 1.21522 1.17417 1.17911 0.89972 0.80576 0.83936 1.90504 1.69936 1.56829 1.32153 1.21730 0.93657 1.07695 0.99186 1.26167 1.03669 0.99188 0.95275 1.88414 1.06577 1.88357 0.95527 1.22568 1.02376 1.08238 0.90603 1.21646 1.06033 0.85380 0.93474 1.21924 1.05814 0.99549 0.95601 1.22197 1.07200 0.95836 0.99367 1.24855 1.02170 0.96208 0.87472 1.84002 1.64766 1.36005 1.24236 0.92152 0.92207 0.84341 0.88431 0.86721 0.86949 0.95013 0.91970 0.82736 0.80245 0.87195 0.85335 0.82487 0.81080 0.74401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.83 16 2 O -0.36 -11.97 10.57 -51.46 -0.54 -12.51 16 3 C 0.47 19.14 7.96 71.23 0.57 19.70 16 4 O -0.54 -24.99 15.73 21.97 0.35 -24.64 16 5 C -0.11 -4.56 6.12 29.85 0.18 -4.38 16 6 C 0.11 5.83 4.44 86.38 0.38 6.21 16 7 N -0.44 -22.37 2.52 -645.98 -1.63 -24.00 16 8 C -0.35 -16.67 8.19 84.07 0.69 -15.98 16 9 H 0.11 4.66 6.98 -2.91 -0.02 4.64 16 10 C 0.00 0.00 5.40 84.93 0.46 0.46 16 11 N -0.90 -48.40 10.74 21.67 0.23 -48.17 16 12 Si 0.99 37.89 29.55 68.60 2.03 39.92 16 13 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 14 H -0.29 -11.29 7.11 99.48 0.71 -10.59 16 15 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 16 C 0.48 23.41 7.36 84.96 0.63 24.03 16 17 O -0.60 -31.85 12.85 -4.81 -0.06 -31.91 16 18 C -0.19 -7.34 9.17 22.29 0.20 -7.14 16 19 C -0.11 -3.41 10.09 67.13 0.68 -2.73 16 20 S -0.03 -1.17 18.60 -56.49 -1.05 -2.23 16 21 C -0.09 -2.24 6.20 71.24 0.44 -1.80 16 22 C -0.01 -0.39 6.58 24.83 0.16 -0.23 16 23 C -0.21 -5.10 10.81 22.19 0.24 -4.86 16 24 C -0.23 -4.73 10.91 22.19 0.24 -4.48 16 25 C -0.04 -0.78 12.09 66.97 0.81 0.02 16 26 O -0.19 -5.15 10.65 -2.43 -0.03 -5.18 16 27 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 28 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 29 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 31 H 0.11 4.52 8.14 -2.38 -0.02 4.50 16 32 H 0.11 6.32 5.11 -2.39 -0.01 6.30 16 33 H 0.03 1.77 7.20 -2.39 -0.02 1.75 16 34 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 35 H 0.16 5.50 6.52 -2.91 -0.02 5.48 16 36 H 0.18 3.85 8.03 -2.91 -0.02 3.83 16 37 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.13 2.51 8.14 -2.40 -0.02 2.49 16 39 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 40 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 41 H 0.24 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -71.78 371.71 7.23 -64.55 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 1.05 Total: 33.50 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 6.88 Total: 10.66 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -1.40 Total: -72.16 kcal Atomic # 8 Polarization: -73.96 SS G_CDS: -0.29 Total: -74.24 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -1.05 Total: -2.23 kcal Total: -71.78 7.23 -64.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.841 kcal (2) G-P(sol) polarization free energy of solvation -71.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds