Wall clock time and date at job start Tue Mar 31 2020 22:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34229 * 116.99547 * 2 1 4 4 O 1.20819 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99582 * 179.97438 * 3 2 1 6 6 C 1.53008 * 109.47082 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.47015 * 180.02562 * 6 5 3 8 8 C 1.36902 * 119.99926 * 264.43040 * 7 6 5 9 9 H 1.08003 * 119.99777 * 130.61778 * 8 7 6 10 10 C 1.39025 * 120.00025 * 310.60988 * 8 7 6 11 11 N 1.31374 * 119.99979 * 350.89092 * 10 8 7 12 12 Si 1.86803 * 119.99739 * 170.88837 * 10 8 7 13 13 H 1.48502 * 109.47154 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.46987 * 120.00254 * 12 10 8 15 15 H 1.48503 * 109.46790 * 240.00159 * 12 10 8 16 16 C 1.34779 * 119.99837 * 84.43130 * 7 6 5 17 17 O 1.21627 * 119.99923 * 2.67916 * 16 7 6 18 18 C 1.47433 * 119.99817 * 182.67431 * 16 7 6 19 19 C 1.39739 * 120.16043 * 307.88860 * 18 16 7 20 20 C 1.38455 * 119.82162 * 179.97438 * 19 18 16 21 21 S 1.76203 * 119.93280 * 180.02562 * 20 19 18 22 22 C 1.81399 * 103.00015 * 179.97438 * 21 20 19 23 23 C 1.39193 * 120.13884 * 359.97438 * 20 19 18 24 24 C 1.38007 * 120.32280 * 359.76797 * 23 20 19 25 25 C 1.38673 * 120.18181 * 0.51319 * 24 23 20 26 26 O 1.35749 * 120.07451 * 179.74196 * 25 24 23 27 27 H 1.08998 * 109.46914 * 299.99480 * 1 2 3 28 28 H 1.09000 * 109.46951 * 59.99547 * 1 2 3 29 29 H 1.09006 * 109.46679 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46991 * 60.00717 * 5 3 2 31 31 H 1.08992 * 109.47339 * 300.00275 * 5 3 2 32 32 H 1.09001 * 109.46346 * 60.00536 * 6 5 3 33 33 H 1.08992 * 109.46919 * 300.00760 * 6 5 3 34 34 H 0.97001 * 120.00189 * 179.97438 * 11 10 8 35 35 H 1.08000 * 120.09339 * 359.95915 * 19 18 16 36 36 H 1.08996 * 109.47534 * 59.99532 * 22 21 20 37 37 H 1.08991 * 109.46948 * 180.02562 * 22 21 20 38 38 H 1.09011 * 109.46611 * 299.99789 * 22 21 20 39 39 H 1.07992 * 119.84045 * 180.02562 * 23 20 19 40 40 H 1.08002 * 119.91329 * 180.27135 * 24 23 20 41 41 H 0.96707 * 113.99971 * 269.72293 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7422 0.0011 7 7 5.4631 2.8189 0.0011 8 6 6.1407 2.9692 1.1811 9 1 6.9731 2.3209 1.4121 10 6 5.7574 3.9563 2.0819 11 7 4.8680 4.8569 1.7303 12 14 6.5071 4.0019 3.7923 13 1 7.4754 2.8855 3.9383 14 1 7.2087 5.2956 3.9909 15 1 5.4327 3.8605 4.8076 16 6 6.1419 2.7415 -1.1607 17 8 5.5383 2.6570 -2.2133 18 6 7.6161 2.7593 -1.1557 19 6 8.3037 3.7730 -0.4833 20 6 9.6883 3.7826 -0.4826 21 16 10.5583 5.0592 0.3649 22 6 12.2967 4.6312 0.0732 23 6 10.3944 2.7854 -1.1493 24 6 9.7213 1.7785 -1.8108 25 6 8.3347 1.7591 -1.8249 26 8 7.6749 0.7705 -2.4807 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9564 0.7807 -0.8893 31 1 3.9557 0.7810 0.8907 32 1 3.6101 3.2360 0.8912 33 1 3.6106 3.2365 -0.8888 34 1 4.6002 5.5454 2.3589 35 1 7.7567 4.5471 0.0344 36 1 12.4956 4.6290 -0.9984 37 1 12.9383 5.3653 0.5606 38 1 12.5010 3.6418 0.4828 39 1 11.4742 2.7973 -1.1453 40 1 10.2758 1.0055 -2.3222 41 1 7.4806 0.9738 -3.4060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871348731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:41 Heat of formation + Delta-G solvation = -131.991648 kcal Electronic energy + Delta-G solvation = -27440.990932 eV Core-core repulsion = 23412.984584 eV Total energy + Delta-G solvation = -4028.006348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.08442 -39.67114 -37.91798 -36.25179 -36.16354 -34.88942 -32.13389 -31.44082 -30.18178 -29.70886 -28.69176 -27.47191 -25.08956 -24.20940 -22.47891 -22.17494 -20.34760 -19.46075 -18.16394 -17.77709 -17.25250 -16.25233 -16.19133 -16.16887 -15.80557 -15.43616 -15.27445 -14.56286 -14.48318 -14.20693 -13.77233 -13.70327 -13.57420 -13.39489 -13.03614 -12.76315 -12.58305 -12.24000 -12.19371 -11.95506 -11.91978 -11.71624 -11.61107 -11.20391 -11.07890 -10.85848 -10.54318 -10.42480 -10.28453 -10.12134 -10.01590 -9.97582 -9.22163 -9.14639 -8.73979 -8.44117 -7.54272 -7.07852 -6.43303 -4.29144 1.34135 1.62673 1.70967 2.60147 2.66590 3.04265 3.10973 3.21397 3.24825 3.60310 4.06553 4.10488 4.55194 4.70155 4.89779 5.02919 5.03643 5.16798 5.22481 5.24853 5.30953 5.31234 5.58993 5.63408 5.73489 5.82450 5.86279 5.96205 6.06642 6.27486 6.30558 6.46540 6.60319 6.71632 6.77619 6.87972 7.09915 7.25441 7.39679 7.87425 8.05054 8.17871 8.28464 8.97284 9.31518 9.78000 10.59422 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.004062 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.586847 B = 6890.918547 C = 8558.226837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.506 6.506 5 C -0.127 4.127 6 C 0.138 3.862 7 N -0.427 5.427 8 C -0.349 4.349 9 H 0.088 0.912 10 C 0.053 3.947 11 N -0.855 5.855 12 Si 0.909 3.091 13 H -0.264 1.264 14 H -0.275 1.275 15 H -0.279 1.279 16 C 0.527 3.473 17 O -0.592 6.592 18 C -0.091 4.091 19 C -0.017 4.017 20 C -0.111 4.111 21 S -0.116 6.116 22 C -0.146 4.146 23 C -0.114 4.114 24 C -0.143 4.143 25 C 0.133 3.867 26 O -0.491 6.491 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.273 0.727 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.209 -5.102 -2.508 9.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.393 6.393 5 C -0.166 4.166 6 C 0.014 3.986 7 N -0.144 5.144 8 C -0.477 4.477 9 H 0.105 0.895 10 C -0.155 4.155 11 N -0.489 5.489 12 Si 0.735 3.265 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.205 1.205 16 C 0.316 3.684 17 O -0.478 6.478 18 C -0.097 4.097 19 C -0.040 4.040 20 C -0.223 4.223 21 S 0.124 5.876 22 C -0.315 4.315 23 C -0.138 4.138 24 C -0.163 4.163 25 C 0.085 3.915 26 O -0.301 6.301 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.166 0.834 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.258 -3.948 -1.707 7.593 hybrid contribution 0.560 -0.798 -0.121 0.983 sum 6.817 -4.746 -1.828 8.506 Atomic orbital electron populations 1.23170 0.77371 1.03027 1.02329 1.86546 1.22738 1.34396 1.84640 1.24058 0.92358 0.80887 0.71703 1.90651 1.67271 1.36223 1.45108 1.21933 0.85907 1.03309 1.05410 1.21074 0.82200 0.90607 1.04719 1.43157 1.04216 1.62049 1.04982 1.19385 1.16436 1.16574 0.95269 0.89481 1.25561 0.96089 0.93832 1.00052 1.69868 1.29863 1.13437 1.35752 0.86128 0.79277 0.78991 0.82145 1.18835 1.20054 1.20459 1.18178 0.86087 0.79879 0.84285 1.90633 1.69803 1.55769 1.31549 1.20317 0.95045 0.94980 0.99322 1.21037 0.90869 0.98033 0.94101 1.21523 0.96820 0.99713 1.04238 1.85655 1.00340 1.34325 1.67243 1.23635 0.96513 1.05913 1.05455 1.20946 0.99052 0.94635 0.99126 1.21052 0.93178 0.99355 1.02723 1.18434 0.89418 0.87853 0.95764 1.84697 1.77570 1.39263 1.28567 0.92164 0.92178 0.88624 0.88176 0.87751 0.87587 0.91588 0.91710 0.83357 0.90056 0.87808 0.89977 0.86012 0.85392 0.75197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -6.02 10.57 -39.25 -0.41 -6.43 16 3 C 0.47 9.00 7.96 36.01 0.29 9.29 16 4 O -0.51 -11.00 15.73 -18.74 -0.29 -11.30 16 5 C -0.13 -2.53 6.10 -27.88 -0.17 -2.70 16 6 C 0.14 3.28 4.14 -4.04 -0.02 3.26 16 7 N -0.43 -10.46 2.44 -116.02 -0.28 -10.75 16 8 C -0.35 -8.53 6.60 -15.00 -0.10 -8.63 16 9 H 0.09 2.14 7.53 -52.48 -0.40 1.74 16 10 C 0.05 1.29 5.11 -17.46 -0.09 1.21 16 11 N -0.85 -22.20 11.71 55.50 0.65 -21.55 16 12 Si 0.91 19.29 29.56 -169.99 -5.03 14.26 16 13 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 16 C 0.53 12.76 6.80 -12.52 -0.09 12.67 16 17 O -0.59 -15.18 16.32 -0.75 -0.01 -15.19 16 18 C -0.09 -1.93 5.02 -104.87 -0.53 -2.46 16 19 C -0.02 -0.34 8.05 -38.94 -0.31 -0.65 16 20 C -0.11 -1.88 6.10 -39.15 -0.24 -2.12 16 21 S -0.12 -1.73 22.56 -107.50 -2.42 -4.16 16 22 C -0.15 -1.43 9.14 101.05 0.92 -0.50 16 23 C -0.11 -1.66 9.35 -39.31 -0.37 -2.03 16 24 C -0.14 -2.16 9.97 -39.51 -0.39 -2.55 16 25 C 0.13 2.44 6.70 -38.70 -0.26 2.18 16 26 O -0.49 -8.56 12.63 -24.96 -0.32 -8.88 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.99 8.14 -51.92 -0.42 1.56 16 31 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 32 H 0.11 2.72 6.07 -51.93 -0.31 2.41 16 33 H 0.07 1.69 7.51 -51.93 -0.39 1.30 16 34 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.15 3.33 7.27 -52.49 -0.38 2.95 16 36 H 0.08 0.70 7.74 -51.93 -0.40 0.30 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.74 7.74 -51.92 -0.40 0.34 16 39 H 0.12 1.38 5.84 -52.49 -0.31 1.08 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.39 5.37 9.06 45.56 0.41 5.78 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -30.96 368.39 -7.12 -38.08 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.27 Total: 11.90 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -0.28 Total: 8.45 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.37 Total: -32.29 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -1.04 Total: -41.80 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.42 Total: -4.16 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.96 -7.12 -38.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871348731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.907 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds