Wall clock time and date at job start Tue Mar 31 2020 22:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34229 * 116.99547 * 2 1 4 4 O 1.20819 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99582 * 179.97438 * 3 2 1 6 6 C 1.53008 * 109.47082 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.47015 * 180.02562 * 6 5 3 8 8 C 1.36902 * 119.99926 * 264.43040 * 7 6 5 9 9 H 1.08003 * 119.99777 * 130.61778 * 8 7 6 10 10 C 1.39025 * 120.00025 * 310.60988 * 8 7 6 11 11 N 1.31374 * 119.99979 * 350.89092 * 10 8 7 12 12 Si 1.86803 * 119.99739 * 170.88837 * 10 8 7 13 13 H 1.48502 * 109.47154 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.46987 * 120.00254 * 12 10 8 15 15 H 1.48503 * 109.46790 * 240.00159 * 12 10 8 16 16 C 1.34779 * 119.99837 * 84.43130 * 7 6 5 17 17 O 1.21627 * 119.99923 * 2.67916 * 16 7 6 18 18 C 1.47433 * 119.99817 * 182.67431 * 16 7 6 19 19 C 1.39739 * 120.16043 * 307.88860 * 18 16 7 20 20 C 1.38455 * 119.82162 * 179.97438 * 19 18 16 21 21 S 1.76203 * 119.93280 * 180.02562 * 20 19 18 22 22 C 1.81399 * 103.00015 * 179.97438 * 21 20 19 23 23 C 1.39193 * 120.13884 * 359.97438 * 20 19 18 24 24 C 1.38007 * 120.32280 * 359.76797 * 23 20 19 25 25 C 1.38673 * 120.18181 * 0.51319 * 24 23 20 26 26 O 1.35749 * 120.07451 * 179.74196 * 25 24 23 27 27 H 1.08998 * 109.46914 * 299.99480 * 1 2 3 28 28 H 1.09000 * 109.46951 * 59.99547 * 1 2 3 29 29 H 1.09006 * 109.46679 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46991 * 60.00717 * 5 3 2 31 31 H 1.08992 * 109.47339 * 300.00275 * 5 3 2 32 32 H 1.09001 * 109.46346 * 60.00536 * 6 5 3 33 33 H 1.08992 * 109.46919 * 300.00760 * 6 5 3 34 34 H 0.97001 * 120.00189 * 179.97438 * 11 10 8 35 35 H 1.08000 * 120.09339 * 359.95915 * 19 18 16 36 36 H 1.08996 * 109.47534 * 59.99532 * 22 21 20 37 37 H 1.08991 * 109.46948 * 180.02562 * 22 21 20 38 38 H 1.09011 * 109.46611 * 299.99789 * 22 21 20 39 39 H 1.07992 * 119.84045 * 180.02562 * 23 20 19 40 40 H 1.08002 * 119.91329 * 180.27135 * 24 23 20 41 41 H 0.96707 * 113.99971 * 269.72293 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7422 0.0011 7 7 5.4631 2.8189 0.0011 8 6 6.1407 2.9692 1.1811 9 1 6.9731 2.3209 1.4121 10 6 5.7574 3.9563 2.0819 11 7 4.8680 4.8569 1.7303 12 14 6.5071 4.0019 3.7923 13 1 7.4754 2.8855 3.9383 14 1 7.2087 5.2956 3.9909 15 1 5.4327 3.8605 4.8076 16 6 6.1419 2.7415 -1.1607 17 8 5.5383 2.6570 -2.2133 18 6 7.6161 2.7593 -1.1557 19 6 8.3037 3.7730 -0.4833 20 6 9.6883 3.7826 -0.4826 21 16 10.5583 5.0592 0.3649 22 6 12.2967 4.6312 0.0732 23 6 10.3944 2.7854 -1.1493 24 6 9.7213 1.7785 -1.8108 25 6 8.3347 1.7591 -1.8249 26 8 7.6749 0.7705 -2.4807 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9564 0.7807 -0.8893 31 1 3.9557 0.7810 0.8907 32 1 3.6101 3.2360 0.8912 33 1 3.6106 3.2365 -0.8888 34 1 4.6002 5.5454 2.3589 35 1 7.7567 4.5471 0.0344 36 1 12.4956 4.6290 -0.9984 37 1 12.9383 5.3653 0.5606 38 1 12.5010 3.6418 0.4828 39 1 11.4742 2.7973 -1.1453 40 1 10.2758 1.0055 -2.3222 41 1 7.4806 0.9738 -3.4060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871348731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:41 Heat of formation + Delta-G solvation = -151.715498 kcal Electronic energy + Delta-G solvation = -27441.846222 eV Core-core repulsion = 23412.984584 eV Total energy + Delta-G solvation = -4028.861638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.63956 -41.19526 -39.56041 -37.66752 -37.59665 -36.76269 -33.97377 -33.05880 -31.70486 -30.96362 -29.62589 -28.69515 -26.98095 -25.79706 -23.94901 -23.56690 -21.88419 -21.25494 -19.77819 -19.13094 -18.77370 -17.86392 -17.70393 -17.66322 -17.39054 -16.91495 -16.55825 -16.21946 -16.18181 -15.46814 -15.22740 -15.14845 -14.86297 -14.56620 -14.54321 -14.21999 -13.85301 -13.73370 -13.50358 -13.34050 -13.27304 -13.15422 -12.99850 -12.90272 -12.76924 -12.69774 -12.11812 -11.98371 -11.81700 -11.65383 -11.63026 -11.09889 -11.07139 -10.56811 -10.41619 -9.90405 -9.47881 -8.34034 -8.27758 -6.24616 -0.02328 0.27337 0.61273 1.10024 1.40098 1.44101 1.56157 1.59051 1.62042 1.97642 2.29522 2.57214 2.92677 3.03819 3.32138 3.78993 3.92605 3.97023 4.07899 4.17616 4.29777 4.30801 4.34742 4.36676 4.37519 4.50289 4.55686 4.67100 4.67786 4.87613 4.90821 4.97743 5.15972 5.21083 5.23693 5.33247 5.39541 5.46039 5.74179 5.98620 6.34258 6.67156 6.81690 7.05443 7.42352 7.88693 8.70559 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.004062 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.586847 B = 6890.918547 C = 8558.226837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.476 3.524 4 O -0.537 6.537 5 C -0.115 4.115 6 C 0.146 3.854 7 N -0.438 5.438 8 C -0.346 4.346 9 H 0.086 0.914 10 C 0.015 3.985 11 N -0.892 5.892 12 Si 0.969 3.031 13 H -0.255 1.255 14 H -0.276 1.276 15 H -0.276 1.276 16 C 0.518 3.482 17 O -0.619 6.619 18 C -0.127 4.127 19 C -0.037 4.037 20 C -0.109 4.109 21 S -0.166 6.166 22 C -0.131 4.131 23 C -0.096 4.096 24 C -0.126 4.126 25 C 0.126 3.874 26 O -0.500 6.500 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.139 0.861 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.035 0.965 34 H 0.272 0.728 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.168 0.832 40 H 0.169 0.831 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.385 -7.097 -2.276 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.320 3.680 4 O -0.426 6.426 5 C -0.154 4.154 6 C 0.022 3.978 7 N -0.155 5.155 8 C -0.474 4.474 9 H 0.104 0.896 10 C -0.189 4.189 11 N -0.528 5.528 12 Si 0.792 3.208 13 H -0.178 1.178 14 H -0.201 1.201 15 H -0.202 1.202 16 C 0.308 3.692 17 O -0.507 6.507 18 C -0.132 4.132 19 C -0.061 4.061 20 C -0.221 4.221 21 S 0.075 5.925 22 C -0.299 4.299 23 C -0.119 4.119 24 C -0.146 4.146 25 C 0.078 3.922 26 O -0.313 6.313 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.120 0.880 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.144 0.856 38 H 0.116 0.884 39 H 0.185 0.815 40 H 0.187 0.813 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 9.436 -5.970 -1.479 11.264 hybrid contribution -0.367 -0.193 -0.281 0.501 sum 9.069 -6.163 -1.760 11.105 Atomic orbital electron populations 1.23598 0.74675 1.05925 1.02486 1.86511 1.25234 1.32243 1.83820 1.23736 0.91929 0.81326 0.71052 1.90642 1.67791 1.37464 1.46730 1.21672 0.87095 1.00551 1.06083 1.20805 0.82280 0.92762 1.01991 1.43347 1.04373 1.62343 1.05438 1.19434 1.16291 1.16464 0.95163 0.89636 1.26273 0.96243 0.93202 1.03223 1.69986 1.31513 1.14329 1.36954 0.85217 0.78617 0.79021 0.77913 1.17801 1.20109 1.20179 1.18780 0.87841 0.78906 0.83693 1.90579 1.70940 1.56950 1.32219 1.20216 0.93170 0.97421 1.02392 1.20696 0.92515 0.97471 0.95409 1.21644 0.95645 1.00740 1.04116 1.85877 1.05094 1.34378 1.67137 1.23796 0.91588 1.07381 1.07159 1.21454 1.01094 0.92754 0.96603 1.21437 0.91584 0.99940 1.01637 1.18628 0.90730 0.87270 0.95587 1.84648 1.77879 1.39002 1.29726 0.92037 0.92125 0.84326 0.87985 0.86418 0.89799 0.94619 0.91787 0.87120 0.88164 0.85612 0.88389 0.81510 0.81309 0.73604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.61 10.57 -51.40 -0.54 -12.15 16 3 C 0.48 18.74 7.96 71.24 0.57 19.31 16 4 O -0.54 -24.27 15.73 21.98 0.35 -23.92 16 5 C -0.12 -4.79 6.10 29.85 0.18 -4.61 16 6 C 0.15 7.40 4.14 86.38 0.36 7.75 16 7 N -0.44 -22.72 2.44 -639.24 -1.56 -24.28 16 8 C -0.35 -17.65 6.60 84.09 0.55 -17.10 16 9 H 0.09 4.33 7.53 -2.91 -0.02 4.31 16 10 C 0.02 0.76 5.11 84.95 0.43 1.20 16 11 N -0.89 -48.92 11.71 21.68 0.25 -48.66 16 12 Si 0.97 40.43 29.56 68.60 2.03 42.46 16 13 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 14 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 15 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 16 C 0.52 26.43 6.80 86.67 0.59 27.02 16 17 O -0.62 -33.56 16.32 1.63 0.03 -33.54 16 18 C -0.13 -5.54 5.02 -20.02 -0.10 -5.64 16 19 C -0.04 -1.54 8.05 22.68 0.18 -1.36 16 20 C -0.11 -3.57 6.10 22.55 0.14 -3.43 16 21 S -0.17 -4.68 22.56 -56.49 -1.27 -5.95 16 22 C -0.13 -1.95 9.14 113.37 1.04 -0.91 16 23 C -0.10 -2.41 9.35 22.44 0.21 -2.20 16 24 C -0.13 -3.34 9.97 22.32 0.22 -3.12 16 25 C 0.13 4.49 6.70 22.84 0.15 4.64 16 26 O -0.50 -17.05 12.63 -85.00 -1.07 -18.12 16 27 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 28 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 29 H 0.14 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.10 4.20 8.14 -2.38 -0.02 4.18 16 31 H 0.12 4.54 8.14 -2.39 -0.02 4.52 16 32 H 0.08 4.61 6.07 -2.39 -0.01 4.60 16 33 H 0.04 1.97 7.51 -2.39 -0.02 1.95 16 34 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 35 H 0.11 5.38 7.27 -2.91 -0.02 5.36 16 36 H 0.10 1.17 7.74 -2.39 -0.02 1.15 16 37 H 0.13 1.39 8.14 -2.40 -0.02 1.37 16 38 H 0.10 1.21 7.74 -2.38 -0.02 1.20 16 39 H 0.17 2.71 5.84 -2.91 -0.02 2.69 16 40 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 41 H 0.41 10.90 9.06 -74.05 -0.67 10.23 16 Total: -1.00 -72.97 368.39 4.33 -68.64 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.41 Total: 32.17 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: 5.72 Total: 23.36 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -1.31 Total: -72.94 kcal Atomic # 8 Polarization: -86.49 SS G_CDS: -1.24 Total: -87.74 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: -4.68 SS G_CDS: -1.27 Total: -5.95 kcal Total: -72.97 4.33 -68.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871348731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.079 kcal (2) G-P(sol) polarization free energy of solvation -72.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds