Wall clock time and date at job start Tue Mar 31 2020 22:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46904 * 110.99795 * 2 1 4 4 C 1.50702 * 109.47028 * 66.04375 * 3 2 1 5 5 H 1.07995 * 119.99837 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99706 * 179.97438 * 4 3 2 7 7 N 1.31505 * 119.99886 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00057 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47364 * 89.99883 * 8 6 4 10 10 H 1.48503 * 109.47320 * 209.99848 * 8 6 4 11 11 H 1.48502 * 109.47150 * 329.99612 * 8 6 4 12 12 C 1.46902 * 111.00071 * 236.04847 * 2 1 3 13 13 C 1.53000 * 109.46751 * 199.83123 * 12 2 1 14 14 H 1.09002 * 109.46963 * 300.49792 * 13 12 2 15 15 O 1.42893 * 109.47380 * 60.50381 * 13 12 2 16 16 C 1.53002 * 109.46939 * 180.49935 * 13 12 2 17 17 S 1.80997 * 109.47242 * 179.97438 * 16 13 12 18 18 C 1.76200 * 99.99872 * 180.02562 * 17 16 13 19 19 N 1.29172 * 124.84446 * 0.03202 * 18 17 16 20 20 C 1.34452 * 117.95212 * 179.97438 * 19 18 17 21 21 N 1.34570 * 128.45965 * 180.02562 * 20 19 18 22 22 C 1.31133 * 122.24076 * 179.97438 * 21 20 19 23 23 C 1.38468 * 121.48823 * 359.97438 * 22 21 20 24 24 C 1.38405 * 119.01236 * 0.02784 * 23 22 21 25 25 C 1.39236 * 118.53653 * 359.97438 * 24 23 22 26 26 S 1.75845 * 124.83660 * 179.72686 * 18 17 16 27 27 H 1.08996 * 109.46746 * 178.41273 * 1 2 3 28 28 H 1.08999 * 109.46872 * 298.41620 * 1 2 3 29 29 H 1.08997 * 109.46723 * 58.41819 * 1 2 3 30 30 H 1.08997 * 109.47134 * 186.04933 * 3 2 1 31 31 H 1.09002 * 109.47069 * 306.04511 * 3 2 1 32 32 H 0.97006 * 120.00354 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.46608 * 319.82896 * 12 2 1 34 34 H 1.09001 * 109.47150 * 79.82838 * 12 2 1 35 35 H 0.96699 * 114.00248 * 59.99565 * 15 13 12 36 36 H 1.08994 * 109.47404 * 300.00323 * 16 13 12 37 37 H 1.09000 * 109.46919 * 59.99917 * 16 13 12 38 38 H 1.08004 * 119.26021 * 180.02562 * 22 21 20 39 39 H 1.08004 * 120.49270 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.73361 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0484 6 6 2.0276 3.3492 1.5289 7 7 1.7143 3.9391 2.6617 8 14 3.0008 4.2759 0.2314 9 1 2.0642 4.9804 -0.6806 10 1 3.8880 5.2669 0.8918 11 1 3.8240 3.3171 -0.5486 12 6 1.9955 -0.7659 -1.1376 13 6 3.4451 -1.1661 -0.8558 14 1 4.0462 -0.2699 -0.7024 15 8 3.4951 -1.9799 0.3178 16 6 3.9975 -1.9532 -2.0459 17 16 5.7126 -2.4260 -1.7129 18 6 6.0858 -3.2918 -3.2015 19 7 5.2618 -3.4645 -4.1812 20 6 5.6939 -4.1488 -5.2548 21 7 5.0224 -4.4494 -6.3816 22 6 5.5683 -5.1293 -7.3610 23 6 6.8762 -5.5783 -7.2887 24 6 7.6194 -5.3009 -6.1546 25 6 7.0199 -4.5776 -5.1270 26 16 7.6355 -4.0373 -3.5683 27 1 -0.3633 -1.0272 -0.0285 28 1 -0.3633 0.4890 0.9038 29 1 -0.3633 0.5382 -0.8755 30 1 3.0797 1.3445 -0.1083 31 1 1.5611 1.9274 -0.8309 32 1 1.9888 4.8552 2.8237 33 1 1.3926 -1.6624 -1.2821 34 1 1.9563 -0.1526 -2.0379 35 1 2.9812 -2.7964 0.2524 36 1 3.3964 -2.8494 -2.1994 37 1 3.9594 -1.3325 -2.9411 38 1 4.9849 -5.3433 -8.2444 39 1 7.3098 -6.1368 -8.1052 40 1 8.6418 -5.6380 -6.0686 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871989957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:31 Heat of formation + Delta-G solvation = 8.505079 kcal Electronic energy + Delta-G solvation = -23334.685928 eV Core-core repulsion = 19787.817598 eV Total energy + Delta-G solvation = -3546.868330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.75018 -39.48522 -38.43829 -37.17174 -34.59688 -33.62274 -32.47596 -31.32857 -30.08911 -28.24626 -26.69144 -25.42808 -24.98303 -23.30431 -23.20047 -21.71377 -19.83743 -19.07787 -18.70292 -18.05886 -17.58238 -17.22238 -16.68759 -16.55785 -16.35446 -16.20520 -16.19194 -15.89400 -15.21884 -14.75894 -14.48665 -14.37043 -14.19675 -13.94146 -13.81372 -13.46846 -13.22543 -13.06269 -13.03105 -12.70580 -12.55777 -12.50763 -11.94442 -11.93574 -11.82323 -11.63406 -11.46674 -11.27472 -10.97563 -10.78728 -10.53651 -10.39372 -9.69910 -9.00300 -8.81505 -8.27923 -6.30562 -1.00682 -0.46081 -0.08050 0.25921 0.35932 0.88929 0.94845 1.32501 1.34928 1.45129 2.33596 2.60888 2.64336 3.02157 3.08375 3.36424 3.47810 3.76179 3.81598 3.83787 3.92895 4.11947 4.20708 4.25352 4.39304 4.47810 4.53253 4.64350 4.69163 4.77235 4.88946 4.94025 4.95343 5.03200 5.20288 5.41497 5.55029 5.96960 5.97169 6.34487 6.63013 6.75646 6.82958 6.92642 7.32364 8.88868 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.019178 B = 0.002304 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.684354 B =12151.257640 C =12388.656760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.539 5.539 3 C 0.171 3.829 4 C -0.513 4.513 5 H 0.038 0.962 6 C 0.006 3.994 7 N -0.948 5.948 8 Si 0.943 3.057 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.249 1.249 12 C 0.030 3.970 13 C 0.135 3.865 14 H 0.085 0.915 15 O -0.551 6.551 16 C -0.132 4.132 17 S 0.053 5.947 18 C 0.088 3.912 19 N -0.494 5.494 20 C 0.259 3.741 21 N -0.494 5.494 22 C 0.138 3.862 23 C -0.145 4.145 24 C -0.025 4.025 25 C -0.251 4.251 26 S 0.152 5.848 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.018 0.982 30 H 0.028 0.972 31 H -0.015 1.015 32 H 0.266 0.734 33 H 0.100 0.900 34 H 0.043 0.957 35 H 0.385 0.615 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.204 0.796 39 H 0.197 0.803 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.312 -23.541 -23.379 36.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.263 5.263 3 C 0.044 3.956 4 C -0.551 4.551 5 H 0.056 0.944 6 C -0.191 4.191 7 N -0.589 5.589 8 Si 0.767 3.233 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.172 1.172 12 C -0.101 4.101 13 C 0.073 3.927 14 H 0.103 0.897 15 O -0.357 6.357 16 C -0.283 4.283 17 S 0.287 5.713 18 C -0.306 4.306 19 N -0.215 5.215 20 C 0.015 3.985 21 N -0.206 5.206 22 C -0.032 4.032 23 C -0.169 4.169 24 C -0.055 4.055 25 C -0.375 4.375 26 S 0.403 5.597 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.003 0.997 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.061 0.939 35 H 0.234 0.766 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.220 0.780 39 H 0.214 0.786 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 15.073 -22.404 -20.995 34.204 hybrid contribution -1.074 0.329 -2.535 2.773 sum 13.999 -22.075 -23.530 35.170 Atomic orbital electron populations 1.22209 0.87057 1.01357 0.99975 1.61709 1.08149 1.14553 1.41851 1.19997 0.95233 0.85922 0.94491 1.21259 1.34606 0.97377 1.01891 0.94407 1.25846 0.97046 0.98508 0.97699 1.70046 1.48664 1.13845 1.26323 0.85774 0.79355 0.78856 0.79355 1.19251 1.20612 1.17235 1.22789 0.95810 0.99343 0.92128 1.21488 0.95432 0.92763 0.83043 0.89686 1.86672 1.74201 1.37173 1.37660 1.24441 0.94912 1.05673 1.03279 1.86342 1.15036 1.61061 1.08860 1.29534 0.96154 1.02745 1.02162 1.66444 1.34230 1.20009 1.00836 1.19780 0.88371 0.97418 0.92968 1.67231 1.38735 1.14868 0.99802 1.23542 0.94290 0.89855 0.95530 1.22712 0.94662 1.00506 0.99056 1.21353 1.01585 0.92556 0.89987 1.24895 0.99678 1.10322 1.02613 1.84738 1.11830 1.53167 1.09965 0.89827 0.93506 0.96318 0.95388 0.99698 0.92475 0.88137 0.93852 0.76578 0.86920 0.87681 0.77964 0.78575 0.80705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.31 127.69 1.19 2.75 16 2 N -0.54 -21.80 4.56 -927.02 -4.23 -26.02 16 3 C 0.17 8.25 3.62 85.56 0.31 8.56 16 4 C -0.51 -30.26 9.09 25.60 0.23 -30.02 16 5 H 0.04 2.49 7.34 -2.91 -0.02 2.47 16 6 C 0.01 0.36 5.47 84.66 0.46 0.83 16 7 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 8 Si 0.94 44.81 27.47 68.60 1.88 46.70 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 12 C 0.03 0.89 4.66 86.30 0.40 1.29 16 13 C 0.13 3.86 3.08 30.60 0.09 3.96 16 14 H 0.09 2.89 6.78 -2.39 -0.02 2.87 16 15 O -0.55 -16.41 12.80 -148.98 -1.91 -18.32 16 16 C -0.13 -3.10 4.83 71.98 0.35 -2.75 16 17 S 0.05 1.26 21.95 -56.49 -1.24 0.02 16 18 C 0.09 2.12 7.64 130.63 1.00 3.12 16 19 N -0.49 -13.74 9.82 -192.37 -1.89 -15.63 16 20 C 0.26 6.67 8.08 134.08 1.08 7.75 16 21 N -0.49 -11.64 10.41 -194.76 -2.03 -13.67 16 22 C 0.14 1.72 11.14 84.85 0.95 2.67 16 23 C -0.15 -1.03 10.12 22.36 0.23 -0.80 16 24 C -0.02 -0.27 10.18 22.55 0.23 -0.04 16 25 C -0.25 -4.88 6.53 22.92 0.15 -4.73 16 26 S 0.15 2.86 23.38 -56.49 -1.32 1.54 16 27 H 0.08 2.46 7.94 -2.39 -0.02 2.44 16 28 H 0.05 2.03 6.90 -2.39 -0.02 2.01 16 29 H 0.02 0.65 8.13 -2.39 -0.02 0.63 16 30 H 0.03 1.36 5.69 -2.39 -0.01 1.34 16 31 H -0.01 -0.69 7.54 -2.39 -0.02 -0.71 16 32 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 33 H 0.10 2.40 7.80 -2.39 -0.02 2.38 16 34 H 0.04 1.27 8.00 -2.39 -0.02 1.25 16 35 H 0.39 8.24 9.05 -74.06 -0.67 7.57 16 36 H 0.11 2.39 8.14 -2.40 -0.02 2.37 16 37 H 0.10 2.52 8.14 -2.40 -0.02 2.50 16 38 H 0.20 0.91 8.06 -2.91 -0.02 0.88 16 39 H 0.20 -0.47 8.06 -2.91 -0.02 -0.49 16 40 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -80.40 362.80 -3.40 -83.81 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.35 Total: 9.06 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 6.67 Total: -7.43 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -7.84 Total: -115.37 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.91 Total: -18.32 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -2.56 Total: 1.56 kcal Total: -80.40 -3.40 -83.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871989957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.314 kcal (2) G-P(sol) polarization free energy of solvation -80.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds