Wall clock time and date at job start Tue Mar 31 2020 22:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.28581 * 2 1 4 4 C 1.54369 * 110.32251 * 122.12099 * 2 1 3 5 5 C 1.54474 * 103.04373 * 136.71877 * 4 2 1 6 6 H 1.08997 * 110.40160 * 119.27994 * 5 4 2 7 7 N 1.46494 * 110.40383 * 241.58493 * 5 4 2 8 8 S 1.65598 * 120.00226 * 214.99959 * 7 5 4 9 9 O 1.42106 * 106.40123 * 311.46573 * 8 7 5 10 10 O 1.42093 * 106.40717 * 178.54505 * 8 7 5 11 11 C 1.76199 * 107.21707 * 64.99995 * 8 7 5 12 12 C 1.38242 * 119.99639 * 90.00210 * 11 8 7 13 13 C 1.38235 * 119.99709 * 180.02562 * 12 11 8 14 14 C 1.38237 * 120.00110 * 359.95907 * 13 12 11 15 15 C 1.50706 * 119.99763 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47294 * 90.00107 * 15 14 13 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99944 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47418 * 89.99710 * 20 18 16 22 22 H 1.48498 * 109.47091 * 209.99770 * 20 18 16 23 23 H 1.48498 * 109.46997 * 329.99580 * 20 18 16 24 24 C 1.38236 * 120.00188 * 0.27014 * 14 13 12 25 25 C 1.38231 * 119.99630 * 359.54348 * 24 14 13 26 26 C 1.51506 * 104.62978 * 0.37756 * 5 4 2 27 27 O 1.20823 * 125.94251 * 159.60031 * 26 5 4 28 28 O 1.34561 * 108.10961 * 339.61402 * 26 5 4 29 29 H 1.08997 * 109.47158 * 297.87991 * 1 2 3 30 30 H 1.08997 * 109.47030 * 57.87681 * 1 2 3 31 31 H 1.09003 * 109.46990 * 177.87733 * 1 2 3 32 32 H 1.09000 * 110.70066 * 18.33221 * 4 2 1 33 33 H 1.09000 * 110.85184 * 255.17513 * 4 2 1 34 34 H 0.97007 * 120.00189 * 35.00452 * 7 5 4 35 35 H 1.07996 * 120.00380 * 0.02562 * 12 11 8 36 36 H 1.08001 * 120.00272 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.46953 * 209.99549 * 15 14 13 38 38 H 1.09000 * 109.47318 * 329.99147 * 15 14 13 39 39 H 0.96997 * 119.99752 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.00153 * 179.72710 * 24 14 13 41 41 H 1.08006 * 120.00211 * 180.20782 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0661 -0.7697 1.2260 5 6 3.2146 -1.6150 0.6321 6 1 4.1620 -1.3531 1.1031 7 7 2.9383 -3.0435 0.8026 8 16 4.1813 -4.0984 1.0931 9 8 5.1846 -3.8117 0.1284 10 8 3.5914 -5.3824 1.2427 11 6 4.8654 -3.6792 2.6618 12 6 4.3705 -4.2671 3.8110 13 6 4.9068 -3.9378 5.0418 14 6 5.9385 -3.0213 5.1233 15 6 6.5235 -2.6627 6.4652 16 6 7.6639 -3.5957 6.7815 17 1 7.9375 -4.3711 6.0811 18 6 8.3574 -3.4602 7.9654 19 7 8.0240 -2.5163 8.8184 20 14 9.7705 -4.6171 8.3578 21 1 11.0382 -4.0444 7.8379 22 1 9.8731 -4.7921 9.8288 23 1 9.5237 -5.9346 7.7186 24 6 6.4301 -2.4299 3.9747 25 6 5.8965 -2.7620 2.7436 26 6 3.2352 -1.2528 -0.8389 27 8 4.1656 -1.4065 -1.5942 28 8 2.0370 -0.7299 -1.1577 29 1 -0.3633 0.4805 0.9084 30 1 -0.3633 0.5464 -0.8703 31 1 -0.3633 -1.0270 -0.0381 32 1 1.2923 -1.4122 1.6462 33 1 2.4453 -0.0811 1.9811 34 1 2.0272 -3.3716 0.7454 35 1 3.5650 -4.9836 3.7472 36 1 4.5200 -4.3967 5.9397 37 1 6.8902 -1.6366 6.4392 38 1 5.7552 -2.7546 7.2328 39 1 8.5121 -2.4208 9.6512 40 1 7.2331 -1.7105 4.0388 41 1 6.2828 -2.3025 1.8457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885189028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:43 Heat of formation + Delta-G solvation = -158.929914 kcal Electronic energy + Delta-G solvation = -27025.495803 eV Core-core repulsion = 22996.321325 eV Total energy + Delta-G solvation = -4029.174479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.14701 -40.25014 -38.80276 -38.43120 -37.06186 -36.51529 -35.59116 -33.38167 -33.32510 -31.97020 -30.24465 -29.25325 -25.73432 -25.59821 -23.75785 -22.92659 -22.49861 -22.28556 -20.77915 -19.18322 -18.88963 -18.56062 -18.06175 -17.90315 -17.87648 -16.85558 -16.75134 -16.15317 -15.96543 -15.76847 -15.25755 -15.05057 -14.72797 -14.62475 -14.44604 -14.20893 -13.92910 -13.59705 -13.42003 -13.41407 -13.28703 -13.22791 -13.15726 -13.00585 -12.76624 -12.68137 -12.65444 -12.45323 -12.12090 -12.04094 -11.94692 -11.67011 -11.46369 -11.41035 -10.64582 -10.55995 -9.96933 -9.96396 -8.26907 -6.38950 -0.80672 -0.09684 0.39514 0.71103 1.38425 1.39431 1.50120 1.84818 2.22146 2.34403 2.50383 2.77197 2.86909 3.06248 3.17905 3.22922 3.65324 3.83527 3.85253 3.94778 3.97708 4.16606 4.26528 4.30201 4.48591 4.48946 4.80553 4.82696 4.84114 4.91848 4.95945 5.08073 5.09942 5.26262 5.28084 5.32679 5.33674 5.68126 5.69130 5.83756 5.87528 5.91765 6.10597 6.27184 6.73105 7.30211 8.83005 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018527 B = 0.002765 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.925599 B =10123.690504 C =10685.813998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.070 3.930 3 H 0.116 0.884 4 C -0.150 4.150 5 C 0.091 3.909 6 H 0.134 0.866 7 N -1.083 6.083 8 S 2.714 3.286 9 O -0.977 6.977 10 O -0.976 6.976 11 C -0.695 4.695 12 C -0.013 4.013 13 C -0.152 4.152 14 C 0.001 3.999 15 C 0.048 3.952 16 C -0.534 4.534 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.924 5.924 20 Si 0.960 3.040 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.151 4.151 25 C -0.022 4.022 26 C 0.468 3.532 27 O -0.471 6.471 28 O -0.362 6.362 29 H 0.108 0.892 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.437 0.563 35 H 0.159 0.841 36 H 0.132 0.868 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.267 0.733 40 H 0.130 0.870 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.510 6.327 -14.158 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.015 3.985 3 H 0.134 0.866 4 C -0.188 4.188 5 C -0.019 4.019 6 H 0.152 0.848 7 N -0.847 5.847 8 S 2.806 3.194 9 O -0.966 6.966 10 O -0.966 6.966 11 C -0.784 4.784 12 C -0.032 4.032 13 C -0.171 4.171 14 C 0.001 3.999 15 C 0.011 3.989 16 C -0.572 4.572 17 H 0.071 0.929 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.785 3.215 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.193 1.193 24 C -0.170 4.170 25 C -0.041 4.041 26 C 0.305 3.695 27 O -0.352 6.352 28 O -0.280 6.280 29 H 0.126 0.874 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.276 0.724 35 H 0.176 0.824 36 H 0.150 0.850 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.076 0.924 40 H 0.148 0.852 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.701 5.712 -15.117 23.968 hybrid contribution 0.907 -0.288 1.176 1.512 sum -16.794 5.424 -13.942 22.491 Atomic orbital electron populations 1.21984 0.89932 1.04146 1.04651 1.24115 0.97887 0.95805 0.80647 0.86625 1.23517 0.97092 0.99943 0.98293 1.22240 1.04617 0.82267 0.92769 0.84832 1.55246 1.24930 1.16684 1.87804 1.01155 0.72723 0.72246 0.73303 1.93618 1.59335 1.84865 1.58814 1.93558 1.77677 1.38052 1.87318 1.30541 1.13457 1.13907 1.20474 1.21027 0.97022 0.94696 0.90463 1.21318 0.97939 0.99153 0.98644 1.20827 0.91162 0.91280 0.96655 1.18272 0.95092 0.96383 0.89166 1.21299 1.15907 1.16042 1.03935 0.92908 1.25810 0.99946 0.97072 0.95931 1.70041 1.42139 1.33725 1.10419 0.85513 0.79249 0.79213 0.77516 1.19811 1.20335 1.19329 1.21285 1.01357 1.02354 0.91960 1.21018 0.92014 0.92803 0.98297 1.24098 0.80540 0.73816 0.91036 1.90757 1.34470 1.50322 1.59688 1.87328 1.32062 1.65632 1.43006 0.87383 0.91443 0.91154 0.85461 0.84787 0.72393 0.82373 0.85020 0.96661 0.96578 0.92388 0.85159 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.49 71.98 0.68 0.14 16 2 C 0.07 0.51 4.13 31.06 0.13 0.64 16 3 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 4 C -0.15 -0.86 6.51 31.56 0.21 -0.65 16 5 C 0.09 1.35 3.58 45.00 0.16 1.51 16 6 H 0.13 1.87 7.38 -2.39 -0.02 1.85 16 7 N -1.08 -17.25 5.48 -169.35 -0.93 -18.17 16 8 S 2.71 67.66 5.65 -56.49 -0.32 67.34 16 9 O -0.98 -31.55 17.04 -128.00 -2.18 -33.73 16 10 O -0.98 -28.11 17.28 -128.00 -2.21 -30.32 16 11 C -0.70 -18.88 5.89 22.27 0.13 -18.75 16 12 C -0.01 -0.36 9.52 22.27 0.21 -0.15 16 13 C -0.15 -5.17 9.70 22.27 0.22 -4.96 16 14 C 0.00 0.04 5.07 -19.86 -0.10 -0.06 16 15 C 0.05 2.33 5.10 29.10 0.15 2.48 16 16 C -0.53 -28.93 9.09 25.60 0.23 -28.69 16 17 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 18 C 0.01 0.63 5.46 84.65 0.46 1.09 16 19 N -0.92 -52.88 13.29 21.45 0.28 -52.60 16 20 Si 0.96 42.92 29.54 68.60 2.03 44.94 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 C -0.15 -5.20 9.70 22.27 0.22 -4.99 16 25 C -0.02 -0.64 8.96 22.27 0.20 -0.44 16 26 C 0.47 10.42 8.14 71.49 0.58 11.01 16 27 O -0.47 -15.17 18.00 21.56 0.39 -14.78 16 28 O -0.36 -6.41 10.87 -55.07 -0.60 -7.01 16 29 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.13 0.24 7.51 -2.39 -0.02 0.23 16 33 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.44 4.28 8.72 -96.74 -0.84 3.44 16 35 H 0.16 3.54 7.62 -2.91 -0.02 3.52 16 36 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 37 H 0.02 0.78 8.08 -2.39 -0.02 0.76 16 38 H 0.02 0.82 8.09 -2.39 -0.02 0.80 16 39 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 41 H 0.15 3.73 7.62 -2.91 -0.02 3.71 16 Total: -1.00 -79.35 366.70 0.16 -79.19 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.22 Total: 6.95 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 3.48 Total: -41.80 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -0.64 Total: -70.77 kcal Atomic # 8 Polarization: -81.24 SS G_CDS: -4.60 Total: -85.85 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 67.66 SS G_CDS: -0.32 Total: 67.34 kcal Total: -79.35 0.16 -79.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885189028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.742 kcal (2) G-P(sol) polarization free energy of solvation -79.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds