Wall clock time and date at job start Tue Mar 31 2020 22:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.26253 * 2 1 4 4 C 1.54486 * 110.21893 * 238.09015 * 2 1 3 5 5 C 1.54686 * 101.62352 * 215.65737 * 4 2 1 6 6 H 1.09008 * 110.65244 * 143.18161 * 5 4 2 7 7 N 1.46497 * 110.53053 * 265.89209 * 5 4 2 8 8 S 1.65603 * 119.99762 * 210.97248 * 7 5 4 9 9 O 1.42099 * 106.40161 * 311.46218 * 8 7 5 10 10 O 1.42100 * 106.39979 * 178.54348 * 8 7 5 11 11 C 1.76198 * 107.21663 * 65.00423 * 8 7 5 12 12 C 1.38238 * 120.00076 * 90.00070 * 11 8 7 13 13 C 1.38234 * 120.00037 * 179.97438 * 12 11 8 14 14 C 1.38235 * 119.99836 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99802 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46817 * 90.00175 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00302 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99832 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46901 * 89.99815 * 20 18 16 22 22 H 1.48495 * 109.47068 * 210.00475 * 20 18 16 23 23 H 1.48508 * 109.46958 * 330.00281 * 20 18 16 24 24 C 1.38231 * 120.00255 * 0.25368 * 14 13 12 25 25 C 1.38233 * 119.99907 * 359.46864 * 24 14 13 26 26 C 1.51324 * 103.94011 * 24.51038 * 5 4 2 27 27 O 1.20823 * 124.94974 * 163.94944 * 26 5 4 28 28 O 1.33834 * 110.09843 * 343.93871 * 26 5 4 29 29 H 1.09001 * 109.46851 * 299.54616 * 1 2 3 30 30 H 1.08997 * 109.46850 * 59.54047 * 1 2 3 31 31 H 1.08989 * 109.47636 * 179.54212 * 1 2 3 32 32 H 1.08995 * 111.00049 * 97.57518 * 4 2 1 33 33 H 1.08997 * 110.99549 * 333.73581 * 4 2 1 34 34 H 0.97001 * 120.00293 * 30.97792 * 7 5 4 35 35 H 1.08003 * 119.99873 * 359.97438 * 12 11 8 36 36 H 1.07997 * 119.99984 * 179.97438 * 13 12 11 37 37 H 1.09000 * 109.47318 * 209.99554 * 15 14 13 38 38 H 1.09000 * 109.47161 * 330.00185 * 15 14 13 39 39 H 0.97002 * 119.99998 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.00101 * 179.72736 * 24 14 13 41 41 H 1.08002 * 120.00599 * 180.27521 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9075 1.0226 0.0000 4 6 2.0639 -0.7663 -1.2306 5 6 3.3268 -1.4457 -0.6508 6 1 3.4573 -2.4410 -1.0758 7 7 4.5130 -0.6227 -0.8994 8 16 5.9898 -1.3415 -1.1114 9 8 6.1401 -2.2710 -0.0472 10 8 6.9143 -0.2921 -1.3632 11 6 5.8997 -2.2913 -2.5927 12 6 6.2352 -1.7161 -3.8041 13 6 6.1650 -2.4614 -4.9662 14 6 5.7588 -3.7818 -4.9169 15 6 5.6818 -4.5943 -6.1839 16 6 7.0051 -5.2733 -6.4264 17 1 7.8205 -5.1305 -5.7327 18 6 7.1753 -6.0760 -7.5344 19 7 8.3299 -6.6690 -7.7457 20 14 5.7652 -6.3225 -8.7346 21 1 5.8250 -5.2789 -9.7894 22 1 5.8760 -7.6650 -9.3595 23 1 4.4737 -6.2194 -8.0089 24 6 5.4178 -4.3554 -3.7063 25 6 5.4935 -3.6118 -2.5435 26 6 3.0441 -1.5350 0.8331 27 8 3.6442 -2.2383 1.6110 28 8 2.0325 -0.7213 1.1583 29 1 -0.3633 0.5068 0.8941 30 1 -0.3633 0.5209 -0.8858 31 1 -0.3634 -1.0275 -0.0082 32 1 2.3248 -0.0793 -2.0356 33 1 1.3426 -1.5089 -1.5714 34 1 4.4334 0.3432 -0.9398 35 1 6.5521 -0.6843 -3.8427 36 1 6.4267 -2.0119 -5.9127 37 1 4.8997 -5.3472 -6.0858 38 1 5.4511 -3.9379 -7.0230 39 1 8.4497 -7.2335 -8.5254 40 1 5.0963 -5.3857 -3.6684 41 1 5.2313 -4.0611 -1.5970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885189030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:52 Heat of formation + Delta-G solvation = -132.040686 kcal Electronic energy + Delta-G solvation = -27066.956446 eV Core-core repulsion = 23038.947972 eV Total energy + Delta-G solvation = -4028.008474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.50369 -38.98728 -37.89877 -37.24942 -35.89050 -35.80576 -33.74686 -32.90207 -31.80550 -30.73761 -29.69334 -28.04505 -25.30106 -23.58633 -22.70288 -22.46975 -21.43380 -20.84278 -19.86990 -18.31863 -18.00071 -17.36725 -17.01735 -16.95458 -16.15524 -16.11417 -15.38291 -15.15825 -14.61867 -14.51137 -14.35452 -14.30395 -13.95565 -13.48571 -13.29261 -13.23022 -12.86458 -12.73352 -12.68707 -12.37516 -12.18363 -12.10915 -11.99111 -11.96239 -11.83614 -11.63361 -11.45252 -11.00948 -10.98190 -10.95161 -10.58568 -10.29951 -10.15256 -9.74871 -9.58340 -8.75457 -8.72058 -8.53985 -6.22216 -4.24291 0.26168 1.15359 1.63877 1.78465 2.64337 2.89421 3.16624 3.25025 3.25794 3.38076 3.55026 3.68307 3.92559 3.99590 4.19468 4.26666 4.36654 4.47517 4.63618 4.80672 5.01220 5.03115 5.10642 5.12958 5.16736 5.23920 5.34219 5.49631 5.54099 5.66916 5.74250 6.06672 6.15821 6.31478 6.38069 6.48970 6.62502 6.62967 6.75014 7.18739 7.20440 7.22874 7.48777 8.30219 8.81292 9.35619 10.90263 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.002896 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.096454 B = 9667.303387 C =10451.891973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.076 3.924 3 H 0.102 0.898 4 C -0.160 4.160 5 C 0.095 3.905 6 H 0.131 0.869 7 N -1.101 6.101 8 S 2.688 3.312 9 O -0.940 6.940 10 O -0.957 6.957 11 C -0.701 4.701 12 C -0.020 4.020 13 C -0.142 4.142 14 C 0.033 3.967 15 C 0.006 3.994 16 C -0.522 4.522 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.893 5.893 20 Si 0.879 3.121 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.141 4.141 25 C -0.026 4.026 26 C 0.465 3.535 27 O -0.421 6.421 28 O -0.340 6.340 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.421 0.579 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.267 0.733 40 H 0.131 0.869 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.714 15.946 11.426 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.119 0.881 4 C -0.199 4.199 5 C -0.016 4.016 6 H 0.149 0.851 7 N -0.860 5.860 8 S 2.780 3.220 9 O -0.930 6.930 10 O -0.947 6.947 11 C -0.791 4.791 12 C -0.039 4.039 13 C -0.161 4.161 14 C 0.033 3.967 15 C -0.031 4.031 16 C -0.559 4.559 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.531 5.531 20 Si 0.706 3.294 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.160 4.160 25 C -0.046 4.046 26 C 0.300 3.700 27 O -0.300 6.300 28 O -0.256 6.256 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.255 0.745 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.149 0.851 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.678 15.396 12.489 25.906 hybrid contribution -0.778 -0.129 -1.612 1.794 sum -17.456 15.267 10.877 25.614 Atomic orbital electron populations 1.22006 0.91853 1.03877 1.03627 1.23686 0.96284 0.95928 0.82006 0.88060 1.23471 0.96174 1.01700 0.98512 1.22050 0.87515 0.98076 0.93909 0.85095 1.55695 1.24071 1.17665 1.88595 1.02086 0.71819 0.73700 0.74351 1.93661 1.83774 1.63516 1.52017 1.93591 1.58410 1.56322 1.86394 1.30308 1.21780 1.08921 1.18106 1.20776 0.92722 0.99357 0.91054 1.21235 1.01886 0.94611 0.98405 1.20729 0.86255 0.93023 0.96695 1.18993 0.99203 0.94919 0.89997 1.20811 0.96265 1.28740 1.10126 0.90652 1.24989 0.95659 0.94904 0.97460 1.69886 1.23589 1.31068 1.28534 0.86787 0.83118 0.77923 0.81557 1.20032 1.21041 1.18947 1.21234 1.02559 1.00349 0.91872 1.20843 0.93200 0.91605 0.98944 1.23419 0.77941 0.77856 0.90783 1.90837 1.46391 1.35294 1.57497 1.86818 1.47832 1.53335 1.37610 0.90999 0.89833 0.91183 0.86842 0.87389 0.74463 0.85023 0.85149 0.94769 0.95216 0.92319 0.85109 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.49 9.53 37.16 0.35 -0.14 16 2 C 0.08 0.36 4.26 -25.95 -0.11 0.25 16 3 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 4 C -0.16 -0.65 6.33 -25.06 -0.16 -0.81 16 5 C 0.09 0.77 3.47 -67.89 -0.24 0.53 16 6 H 0.13 1.02 7.37 -51.92 -0.38 0.63 16 7 N -1.10 -9.45 5.54 -4.86 -0.03 -9.48 16 8 S 2.69 35.42 5.67 -107.50 -0.61 34.81 16 9 O -0.94 -15.63 16.83 -57.27 -0.96 -16.60 16 10 O -0.96 -14.61 17.28 -57.17 -0.99 -15.60 16 11 C -0.70 -10.08 5.85 -39.58 -0.23 -10.31 16 12 C -0.02 -0.29 9.52 -39.58 -0.38 -0.67 16 13 C -0.14 -2.41 9.70 -39.58 -0.38 -2.79 16 14 C 0.03 0.63 5.07 -104.62 -0.53 0.10 16 15 C 0.01 0.13 4.17 -29.03 -0.12 0.01 16 16 C -0.52 -14.05 9.65 -34.44 -0.33 -14.39 16 17 H 0.08 2.25 7.98 -52.48 -0.42 1.84 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 19 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 20 Si 0.88 20.17 27.47 -169.99 -4.67 15.51 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 24 C -0.14 -2.40 9.70 -39.59 -0.38 -2.79 16 25 C -0.03 -0.40 8.95 -39.58 -0.35 -0.75 16 26 C 0.47 5.32 8.29 36.31 0.30 5.62 16 27 O -0.42 -6.75 17.79 -18.51 -0.33 -7.08 16 28 O -0.34 -3.18 10.63 -37.90 -0.40 -3.58 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.11 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.11 0.30 7.91 -51.93 -0.41 -0.11 16 34 H 0.42 2.30 8.84 -34.47 -0.30 2.00 16 35 H 0.13 1.63 7.62 -52.48 -0.40 1.23 16 36 H 0.13 2.06 8.06 -52.49 -0.42 1.63 16 37 H 0.03 0.73 7.14 -51.93 -0.37 0.36 16 38 H 0.03 0.62 7.51 -51.93 -0.39 0.23 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.13 1.74 7.62 -52.49 -0.40 1.34 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -37.25 362.96 -9.61 -46.86 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.20 Total: -0.39 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -2.66 Total: -24.22 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.75 Total: -35.18 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -2.68 Total: -42.85 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.51 kcal Atomic # 16 Polarization: 35.42 SS G_CDS: -0.61 Total: 34.81 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.25 -9.61 -46.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885189030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.179 kcal (2) G-P(sol) polarization free energy of solvation -37.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds