Wall clock time and date at job start Tue Mar 31 2020 22:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.26253 * 2 1 4 4 C 1.54486 * 110.21893 * 238.09015 * 2 1 3 5 5 C 1.54686 * 101.62352 * 215.65737 * 4 2 1 6 6 H 1.09008 * 110.65244 * 143.18161 * 5 4 2 7 7 N 1.46497 * 110.53053 * 265.89209 * 5 4 2 8 8 S 1.65603 * 119.99762 * 210.97248 * 7 5 4 9 9 O 1.42099 * 106.40161 * 311.46218 * 8 7 5 10 10 O 1.42100 * 106.39979 * 178.54348 * 8 7 5 11 11 C 1.76198 * 107.21663 * 65.00423 * 8 7 5 12 12 C 1.38238 * 120.00076 * 90.00070 * 11 8 7 13 13 C 1.38234 * 120.00037 * 179.97438 * 12 11 8 14 14 C 1.38235 * 119.99836 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99802 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46817 * 90.00175 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00302 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99832 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46901 * 89.99815 * 20 18 16 22 22 H 1.48495 * 109.47068 * 210.00475 * 20 18 16 23 23 H 1.48508 * 109.46958 * 330.00281 * 20 18 16 24 24 C 1.38231 * 120.00255 * 0.25368 * 14 13 12 25 25 C 1.38233 * 119.99907 * 359.46864 * 24 14 13 26 26 C 1.51324 * 103.94011 * 24.51038 * 5 4 2 27 27 O 1.20823 * 124.94974 * 163.94944 * 26 5 4 28 28 O 1.33834 * 110.09843 * 343.93871 * 26 5 4 29 29 H 1.09001 * 109.46851 * 299.54616 * 1 2 3 30 30 H 1.08997 * 109.46850 * 59.54047 * 1 2 3 31 31 H 1.08989 * 109.47636 * 179.54212 * 1 2 3 32 32 H 1.08995 * 111.00049 * 97.57518 * 4 2 1 33 33 H 1.08997 * 110.99549 * 333.73581 * 4 2 1 34 34 H 0.97001 * 120.00293 * 30.97792 * 7 5 4 35 35 H 1.08003 * 119.99873 * 359.97438 * 12 11 8 36 36 H 1.07997 * 119.99984 * 179.97438 * 13 12 11 37 37 H 1.09000 * 109.47318 * 209.99554 * 15 14 13 38 38 H 1.09000 * 109.47161 * 330.00185 * 15 14 13 39 39 H 0.97002 * 119.99998 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.00101 * 179.72736 * 24 14 13 41 41 H 1.08002 * 120.00599 * 180.27521 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9075 1.0226 0.0000 4 6 2.0639 -0.7663 -1.2306 5 6 3.3268 -1.4457 -0.6508 6 1 3.4573 -2.4410 -1.0758 7 7 4.5130 -0.6227 -0.8994 8 16 5.9898 -1.3415 -1.1114 9 8 6.1401 -2.2710 -0.0472 10 8 6.9143 -0.2921 -1.3632 11 6 5.8997 -2.2913 -2.5927 12 6 6.2352 -1.7161 -3.8041 13 6 6.1650 -2.4614 -4.9662 14 6 5.7588 -3.7818 -4.9169 15 6 5.6818 -4.5943 -6.1839 16 6 7.0051 -5.2733 -6.4264 17 1 7.8205 -5.1305 -5.7327 18 6 7.1753 -6.0760 -7.5344 19 7 8.3299 -6.6690 -7.7457 20 14 5.7652 -6.3225 -8.7346 21 1 5.8250 -5.2789 -9.7894 22 1 5.8760 -7.6650 -9.3595 23 1 4.4737 -6.2194 -8.0089 24 6 5.4178 -4.3554 -3.7063 25 6 5.4935 -3.6118 -2.5435 26 6 3.0441 -1.5350 0.8331 27 8 3.6442 -2.2383 1.6110 28 8 2.0325 -0.7213 1.1583 29 1 -0.3633 0.5068 0.8941 30 1 -0.3633 0.5209 -0.8858 31 1 -0.3634 -1.0275 -0.0082 32 1 2.3248 -0.0793 -2.0356 33 1 1.3426 -1.5089 -1.5714 34 1 4.4334 0.3432 -0.9398 35 1 6.5521 -0.6843 -3.8427 36 1 6.4267 -2.0119 -5.9127 37 1 4.8997 -5.3472 -6.0858 38 1 5.4511 -3.9379 -7.0230 39 1 8.4497 -7.2335 -8.5254 40 1 5.0963 -5.3857 -3.6684 41 1 5.2313 -4.0611 -1.5970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885189030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:51 Heat of formation + Delta-G solvation = -159.577291 kcal Electronic energy + Delta-G solvation = -27068.150523 eV Core-core repulsion = 23038.947972 eV Total energy + Delta-G solvation = -4029.202551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.18663 -40.27717 -38.77740 -38.41925 -37.05496 -36.56139 -35.53885 -33.55848 -33.35551 -31.98439 -30.24492 -29.72258 -25.80438 -25.29596 -23.79057 -23.15307 -22.34500 -22.06891 -20.87350 -19.28152 -19.02155 -18.82806 -18.40143 -17.84461 -17.01948 -16.89641 -16.72010 -16.34528 -15.98558 -15.65870 -15.36124 -15.23067 -14.91656 -14.62508 -14.47301 -14.22824 -14.03382 -13.72984 -13.61636 -13.45751 -13.29564 -13.21818 -13.03550 -12.95592 -12.85515 -12.58404 -12.53263 -12.30311 -12.07822 -12.01901 -11.91508 -11.71032 -11.51179 -11.43067 -10.81966 -10.56680 -9.97475 -9.96069 -8.32779 -6.40442 -0.80791 -0.11754 0.38157 0.92612 1.37317 1.39541 1.50680 1.90814 2.09102 2.33601 2.46466 2.70158 2.82362 3.01934 3.12387 3.24410 3.57716 3.81970 3.90274 3.95938 3.99554 4.08250 4.27855 4.29052 4.46269 4.47572 4.77409 4.81224 4.85463 4.86316 4.94782 5.01139 5.06482 5.08158 5.17574 5.28292 5.33989 5.50348 5.75617 5.78028 5.89707 5.92330 6.19388 6.36966 6.66811 7.23750 8.83734 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.002896 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.096454 B = 9667.303387 C =10451.891973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.066 3.934 3 H 0.125 0.875 4 C -0.146 4.146 5 C 0.090 3.910 6 H 0.135 0.865 7 N -1.082 6.082 8 S 2.713 3.287 9 O -0.975 6.975 10 O -0.976 6.976 11 C -0.694 4.694 12 C -0.015 4.015 13 C -0.151 4.151 14 C 0.002 3.998 15 C 0.011 3.989 16 C -0.527 4.527 17 H 0.025 0.975 18 C 0.008 3.992 19 N -0.949 5.949 20 Si 0.955 3.045 21 H -0.263 1.263 22 H -0.287 1.287 23 H -0.239 1.239 24 C -0.151 4.151 25 C -0.025 4.025 26 C 0.463 3.537 27 O -0.482 6.482 28 O -0.355 6.355 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.144 0.856 33 H 0.126 0.874 34 H 0.438 0.562 35 H 0.160 0.840 36 H 0.137 0.863 37 H 0.042 0.958 38 H 0.043 0.957 39 H 0.268 0.732 40 H 0.134 0.866 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.777 18.220 10.562 29.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.012 3.988 3 H 0.143 0.857 4 C -0.185 4.185 5 C -0.020 4.020 6 H 0.153 0.847 7 N -0.846 5.846 8 S 2.805 3.195 9 O -0.965 6.965 10 O -0.966 6.966 11 C -0.783 4.783 12 C -0.034 4.034 13 C -0.170 4.170 14 C 0.001 3.999 15 C -0.026 4.026 16 C -0.565 4.565 17 H 0.043 0.957 18 C -0.190 4.190 19 N -0.589 5.589 20 Si 0.777 3.223 21 H -0.188 1.188 22 H -0.213 1.213 23 H -0.162 1.162 24 C -0.170 4.170 25 C -0.045 4.045 26 C 0.301 3.699 27 O -0.366 6.366 28 O -0.271 6.271 29 H 0.085 0.915 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.162 0.838 33 H 0.144 0.856 34 H 0.277 0.723 35 H 0.177 0.823 36 H 0.155 0.845 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.152 0.848 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.774 17.724 11.613 28.983 hybrid contribution 0.163 -0.710 -1.186 1.391 sum -19.611 17.014 10.427 27.979 Atomic orbital electron populations 1.22054 0.90588 1.03930 1.04654 1.24169 0.97300 0.96569 0.80722 0.85712 1.23606 0.93916 1.02283 0.98674 1.22256 0.88792 0.98964 0.91996 0.84722 1.55181 1.22909 1.18660 1.87865 1.01194 0.72297 0.72805 0.73251 1.93631 1.84850 1.64913 1.53113 1.93561 1.60097 1.56542 1.86424 1.30575 1.20241 1.08855 1.18595 1.21053 0.91678 1.00447 0.90256 1.21379 1.01779 0.94141 0.99663 1.20600 0.89176 0.93968 0.96112 1.18839 0.96262 0.95324 0.92168 1.21084 0.97447 1.29002 1.08965 0.95661 1.26039 0.98688 0.94477 0.99784 1.70065 1.26483 1.32621 1.29712 0.85598 0.80067 0.77795 0.78847 1.18772 1.21262 1.16179 1.21332 1.02836 1.00769 0.92022 1.21026 0.92660 0.91818 0.98953 1.23965 0.77419 0.76845 0.91706 1.90796 1.48636 1.37850 1.59301 1.86797 1.47056 1.52936 1.40326 0.91518 0.87211 0.91685 0.83839 0.85567 0.72272 0.82289 0.84474 0.93976 0.93908 0.92259 0.84829 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.47 9.53 71.98 0.69 0.22 16 2 C 0.07 0.39 4.26 31.10 0.13 0.53 16 3 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 4 C -0.15 -0.58 6.33 31.67 0.20 -0.38 16 5 C 0.09 1.24 3.47 45.02 0.16 1.39 16 6 H 0.14 1.80 7.37 -2.38 -0.02 1.78 16 7 N -1.08 -15.62 5.54 -169.27 -0.94 -16.56 16 8 S 2.71 66.91 5.67 -56.49 -0.32 66.59 16 9 O -0.98 -31.99 16.83 -127.91 -2.15 -34.15 16 10 O -0.98 -27.87 17.28 -128.00 -2.21 -30.08 16 11 C -0.69 -18.67 5.85 22.27 0.13 -18.54 16 12 C -0.02 -0.41 9.52 22.27 0.21 -0.20 16 13 C -0.15 -4.90 9.70 22.27 0.22 -4.69 16 14 C 0.00 0.07 5.07 -19.86 -0.10 -0.03 16 15 C 0.01 0.48 4.17 29.10 0.12 0.60 16 16 C -0.53 -29.16 9.65 25.60 0.25 -28.91 16 17 H 0.02 1.59 7.98 -2.91 -0.02 1.57 16 18 C 0.01 0.42 5.47 84.65 0.46 0.88 16 19 N -0.95 -58.22 13.96 21.45 0.30 -57.92 16 20 Si 0.95 41.23 27.47 68.60 1.88 43.12 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.24 -9.22 6.54 99.48 0.65 -8.57 16 24 C -0.15 -5.05 9.70 22.27 0.22 -4.83 16 25 C -0.03 -0.73 8.95 22.27 0.20 -0.53 16 26 C 0.46 10.23 8.29 71.43 0.59 10.82 16 27 O -0.48 -15.87 17.79 21.74 0.39 -15.48 16 28 O -0.36 -6.14 10.63 -47.98 -0.51 -6.65 16 29 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.14 -0.21 8.08 -2.39 -0.02 -0.23 16 33 H 0.13 0.14 7.91 -2.39 -0.02 0.12 16 34 H 0.44 3.21 8.84 -96.74 -0.85 2.36 16 35 H 0.16 3.43 7.62 -2.91 -0.02 3.41 16 36 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 37 H 0.04 1.73 7.14 -2.39 -0.02 1.71 16 38 H 0.04 1.71 7.51 -2.39 -0.02 1.70 16 39 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 41 H 0.15 3.76 7.62 -2.91 -0.02 3.73 16 Total: -1.00 -85.69 362.96 0.07 -85.63 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.16 Total: 9.17 kcal Atomic # 6 Polarization: -47.14 SS G_CDS: 3.47 Total: -43.67 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -0.64 Total: -74.48 kcal Atomic # 8 Polarization: -81.87 SS G_CDS: -4.49 Total: -86.36 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.88 Total: 43.12 kcal Atomic # 16 Polarization: 66.91 SS G_CDS: -0.32 Total: 66.59 kcal Total: -85.69 0.07 -85.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885189030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.948 kcal (2) G-P(sol) polarization free energy of solvation -85.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds