Wall clock time and date at job start Tue Mar 31 2020 22:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 116.99806 * 2 1 4 4 O 1.20832 * 119.99617 * 4.26787 * 3 2 1 5 5 C 1.50696 * 119.99984 * 184.26587 * 3 2 1 6 6 H 1.08998 * 115.56369 * 17.63859 * 5 3 2 7 7 C 1.53082 * 117.50992 * 231.94222 * 5 3 2 8 8 C 1.53001 * 117.49829 * 163.33642 * 5 3 2 9 9 H 1.09001 * 117.49825 * 215.00195 * 8 5 3 10 10 C 1.52999 * 117.49943 * 359.97438 * 8 5 3 11 11 N 1.46501 * 109.47200 * 163.12001 * 10 8 5 12 12 S 1.65600 * 120.00072 * 162.65593 * 11 10 8 13 13 O 1.42105 * 106.40043 * 168.59098 * 12 11 10 14 14 O 1.42102 * 106.40303 * 35.67357 * 12 11 10 15 15 C 1.76197 * 107.21872 * 282.12921 * 12 11 10 16 16 C 1.37641 * 120.12401 * 109.32314 * 15 12 11 17 17 C 1.38615 * 120.24253 * 179.97438 * 16 15 12 18 18 C 1.38647 * 120.50694 * 0.02840 * 17 16 15 19 19 C 1.37603 * 120.24629 * 359.66882 * 18 17 16 20 20 C 1.40699 * 120.12960 * 289.31048 * 15 12 11 21 21 C 1.41394 * 120.24157 * 0.02562 * 20 15 12 22 22 H 1.08003 * 119.99923 * 28.87168 * 21 20 15 23 23 C 1.39948 * 119.99746 * 208.59136 * 21 20 15 24 24 N 1.30826 * 120.00055 * 21.35226 * 23 21 20 25 25 Si 1.86797 * 119.99903 * 201.34722 * 23 21 20 26 26 H 1.48500 * 109.47166 * 5.01585 * 25 23 21 27 27 H 1.48500 * 109.47124 * 125.01668 * 25 23 21 28 28 H 1.48496 * 109.47369 * 245.01402 * 25 23 21 29 29 H 1.09004 * 109.47483 * 63.66149 * 1 2 3 30 30 H 1.08996 * 109.47288 * 183.66134 * 1 2 3 31 31 H 1.09003 * 109.47417 * 303.66325 * 1 2 3 32 32 H 1.08999 * 117.49364 * 145.03860 * 7 5 3 33 33 H 1.08995 * 117.53149 * 359.97438 * 7 5 3 34 34 H 1.08991 * 109.47187 * 43.11363 * 10 8 5 35 35 H 1.09006 * 109.47058 * 283.11084 * 10 8 5 36 36 H 0.97005 * 119.99687 * 342.64968 * 11 10 8 37 37 H 1.07993 * 119.88149 * 0.02562 * 16 15 12 38 38 H 1.08004 * 119.74266 * 180.02562 * 17 16 15 39 39 H 1.08005 * 119.88034 * 179.97438 * 18 17 16 40 40 H 1.08003 * 120.13079 * 180.32278 * 19 18 17 41 41 H 0.96995 * 119.99683 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4057 2.2080 0.0779 5 6 3.5630 1.2766 -0.0971 6 1 4.0599 0.3766 -0.4593 7 6 4.2957 2.1136 0.9546 8 6 4.1747 2.6251 -0.4823 9 1 5.0737 2.6122 -1.0985 10 6 3.2149 3.7884 -0.7401 11 7 3.9553 5.0517 -0.6942 12 16 3.2950 6.4226 -1.3476 13 8 4.1084 7.5048 -0.9158 14 8 1.8977 6.3530 -1.0986 15 6 3.4950 6.3161 -3.0950 16 6 2.4014 6.1054 -3.9038 17 6 2.5559 6.0218 -5.2788 18 6 3.8105 6.1484 -5.8552 19 6 4.9169 6.3657 -5.0664 20 6 4.7730 6.4464 -3.6688 21 6 5.9036 6.6628 -2.8477 22 1 5.9167 6.2845 -1.8362 23 6 7.0079 7.3621 -3.3477 24 7 6.8663 8.1612 -4.3738 25 14 8.6841 7.1546 -2.5499 26 1 8.6046 6.1124 -1.4950 27 1 9.6741 6.7439 -3.5777 28 1 9.1063 8.4423 -1.9427 29 1 -0.3634 0.4560 -0.9210 30 1 -0.3633 -1.0255 0.0656 31 1 -0.3634 0.5697 0.8553 32 1 5.2742 1.7639 1.2836 33 1 3.6918 2.6064 1.7165 34 1 2.4379 3.7945 0.0242 35 1 2.7573 3.6710 -1.7225 36 1 4.8323 5.0851 -0.2810 37 1 1.4194 6.0057 -3.4658 38 1 1.6922 5.8567 -5.9059 39 1 3.9192 6.0812 -6.9276 40 1 5.8926 6.4692 -5.5177 41 1 7.6316 8.6462 -4.7201 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885776269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:25 Heat of formation + Delta-G solvation = -113.659272 kcal Electronic energy + Delta-G solvation = -27653.000321 eV Core-core repulsion = 23625.788925 eV Total energy + Delta-G solvation = -4027.211396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.82215 -38.06030 -37.55359 -36.17232 -36.07184 -34.73512 -33.93858 -33.70456 -30.20939 -29.56696 -28.40067 -26.19251 -25.48734 -24.47658 -21.62769 -21.29995 -21.11423 -20.39233 -18.51016 -17.98231 -17.67452 -16.91947 -16.58998 -16.43386 -15.90614 -15.46882 -15.42336 -14.97091 -14.34398 -14.09143 -13.70654 -13.46662 -13.31863 -13.19164 -13.08232 -12.79942 -12.70253 -12.15111 -11.93908 -11.76501 -11.56256 -11.28132 -11.17078 -11.14904 -10.99489 -10.95065 -10.93824 -10.69420 -10.58299 -10.52995 -10.43232 -10.31467 -9.84926 -9.36840 -9.35306 -8.62682 -8.00305 -7.61555 -7.08441 -4.71029 1.59183 1.95041 2.37524 2.50979 2.72687 2.96898 3.01589 3.11282 3.55559 3.77309 4.03704 4.37670 4.47657 4.58121 4.62993 4.82156 4.88404 4.94046 5.03278 5.25172 5.31795 5.34386 5.51872 5.57681 5.66778 5.81756 5.91283 6.06492 6.09161 6.24888 6.36723 6.44921 6.57201 6.80073 6.92847 7.10282 7.33011 7.51688 7.56273 7.65938 7.73891 7.81968 7.91579 8.29250 8.50784 8.66225 9.88211 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.004014 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.558591 B = 6973.300044 C = 7757.083443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.486 3.514 4 O -0.492 6.492 5 C -0.167 4.167 6 H 0.137 0.863 7 C -0.141 4.141 8 C -0.118 4.118 9 H 0.130 0.870 10 C 0.145 3.855 11 N -1.122 6.122 12 S 2.700 3.300 13 O -0.962 6.962 14 O -0.994 6.994 15 C -0.778 4.778 16 C 0.001 3.999 17 C -0.255 4.255 18 C -0.073 4.073 19 C -0.163 4.163 20 C 0.188 3.812 21 C -0.447 4.447 22 H 0.088 0.912 23 C 0.085 3.915 24 N -0.766 5.766 25 Si 0.911 3.089 26 H -0.254 1.254 27 H -0.270 1.270 28 H -0.268 1.268 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.411 0.589 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.004 -14.624 6.471 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.330 3.670 4 O -0.379 6.379 5 C -0.187 4.187 6 H 0.155 0.845 7 C -0.178 4.178 8 C -0.138 4.138 9 H 0.148 0.852 10 C 0.019 3.981 11 N -0.879 5.879 12 S 2.796 3.204 13 O -0.952 6.952 14 O -0.985 6.985 15 C -0.873 4.873 16 C -0.019 4.019 17 C -0.275 4.275 18 C -0.092 4.092 19 C -0.183 4.183 20 C 0.183 3.817 21 C -0.474 4.474 22 H 0.106 0.894 23 C -0.138 4.138 24 N -0.388 5.388 25 Si 0.734 3.266 26 H -0.177 1.177 27 H -0.195 1.195 28 H -0.193 1.193 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.244 0.756 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.726 -13.480 6.800 15.342 hybrid contribution 1.146 -0.365 -0.549 1.322 sum -1.580 -13.845 6.252 15.273 Atomic orbital electron populations 1.23286 0.76129 1.03563 1.02916 1.86463 1.23498 1.33320 1.84260 1.22723 0.90484 0.81332 0.72495 1.90694 1.66859 1.35564 1.44801 1.21820 0.88414 0.98766 1.09662 0.84523 1.23230 1.01492 1.00356 0.92707 1.22762 1.01132 0.91336 0.98567 0.85210 1.21082 0.92676 0.80789 1.03522 1.55776 1.31690 1.24624 1.75769 1.01165 0.72321 0.72175 0.74705 1.93553 1.69400 1.50197 1.82063 1.93457 1.32287 1.86715 1.85999 1.29969 0.99914 1.35240 1.22217 1.20281 0.95844 0.92028 0.93751 1.20457 0.96424 1.16280 0.94355 1.20850 0.93488 0.97267 0.97602 1.21288 0.97559 1.05478 0.93993 1.16960 0.89203 0.83053 0.92447 1.19805 0.98571 1.29400 0.99651 0.89411 1.25943 1.01435 0.92344 0.94095 1.69841 1.33153 1.15861 1.19972 0.86203 0.80187 0.80039 0.80168 1.17742 1.19510 1.19268 0.91660 0.88211 0.91701 0.86876 0.87495 0.88484 0.91006 0.75620 0.87463 0.88797 0.88879 0.86813 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.62 101.05 1.07 1.37 16 2 O -0.36 -3.93 10.57 -39.26 -0.41 -4.34 16 3 C 0.49 6.07 7.63 36.00 0.27 6.35 16 4 O -0.49 -7.63 12.92 -18.75 -0.24 -7.87 16 5 C -0.17 -1.70 6.30 -91.73 -0.58 -2.28 16 6 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 7 C -0.14 -1.33 9.89 -26.69 -0.26 -1.59 16 8 C -0.12 -1.41 5.83 -90.62 -0.53 -1.94 16 9 H 0.13 1.42 8.14 -51.93 -0.42 0.99 16 10 C 0.15 2.34 4.92 -4.04 -0.02 2.32 16 11 N -1.12 -20.03 5.62 -10.61 -0.06 -20.09 16 12 S 2.70 61.15 5.14 -107.50 -0.55 60.60 16 13 O -0.96 -24.46 16.08 -57.17 -0.92 -25.38 16 14 O -0.99 -23.92 16.47 -57.17 -0.94 -24.86 16 15 C -0.78 -19.04 5.98 -38.87 -0.23 -19.28 16 16 C 0.00 0.02 9.53 -39.66 -0.38 -0.36 16 17 C -0.25 -5.70 10.05 -39.29 -0.39 -6.09 16 18 C -0.07 -1.66 10.02 -39.66 -0.40 -2.06 16 19 C -0.16 -4.05 8.69 -38.87 -0.34 -4.39 16 20 C 0.19 4.82 5.51 -106.83 -0.59 4.23 16 21 C -0.45 -11.20 7.46 -37.74 -0.28 -11.48 16 22 H 0.09 2.05 5.86 -52.48 -0.31 1.75 16 23 C 0.08 2.03 5.02 -17.34 -0.09 1.94 16 24 N -0.77 -18.97 11.45 55.55 0.64 -18.33 16 25 Si 0.91 17.62 29.61 -169.99 -5.03 12.59 16 26 H -0.25 -4.71 7.11 56.52 0.40 -4.31 16 27 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 28 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.55 8.01 -51.93 -0.42 0.14 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 1.66 5.56 -51.93 -0.29 1.37 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.41 6.44 8.23 -34.47 -0.28 6.16 16 37 H 0.11 2.35 7.33 -52.49 -0.38 1.97 16 38 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 39 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 40 H 0.11 2.81 6.59 -52.48 -0.35 2.47 16 41 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -33.04 359.62 -9.81 -42.86 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -4.97 Total: 12.65 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: -2.74 Total: -33.25 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.58 Total: -38.42 kcal Atomic # 8 Polarization: -59.93 SS G_CDS: -2.52 Total: -62.45 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Atomic # 16 Polarization: 61.15 SS G_CDS: -0.55 Total: 60.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.04 -9.81 -42.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885776269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.802 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds