Wall clock time and date at job start Tue Mar 31 2020 22:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 116.99806 * 2 1 4 4 O 1.20832 * 119.99617 * 4.26787 * 3 2 1 5 5 C 1.50696 * 119.99984 * 184.26587 * 3 2 1 6 6 H 1.08998 * 115.56369 * 17.63859 * 5 3 2 7 7 C 1.53082 * 117.50992 * 231.94222 * 5 3 2 8 8 C 1.53001 * 117.49829 * 163.33642 * 5 3 2 9 9 H 1.09001 * 117.49825 * 215.00195 * 8 5 3 10 10 C 1.52999 * 117.49943 * 359.97438 * 8 5 3 11 11 N 1.46501 * 109.47200 * 163.12001 * 10 8 5 12 12 S 1.65600 * 120.00072 * 162.65593 * 11 10 8 13 13 O 1.42105 * 106.40043 * 168.59098 * 12 11 10 14 14 O 1.42102 * 106.40303 * 35.67357 * 12 11 10 15 15 C 1.76197 * 107.21872 * 282.12921 * 12 11 10 16 16 C 1.37641 * 120.12401 * 109.32314 * 15 12 11 17 17 C 1.38615 * 120.24253 * 179.97438 * 16 15 12 18 18 C 1.38647 * 120.50694 * 0.02840 * 17 16 15 19 19 C 1.37603 * 120.24629 * 359.66882 * 18 17 16 20 20 C 1.40699 * 120.12960 * 289.31048 * 15 12 11 21 21 C 1.41394 * 120.24157 * 0.02562 * 20 15 12 22 22 H 1.08003 * 119.99923 * 28.87168 * 21 20 15 23 23 C 1.39948 * 119.99746 * 208.59136 * 21 20 15 24 24 N 1.30826 * 120.00055 * 21.35226 * 23 21 20 25 25 Si 1.86797 * 119.99903 * 201.34722 * 23 21 20 26 26 H 1.48500 * 109.47166 * 5.01585 * 25 23 21 27 27 H 1.48500 * 109.47124 * 125.01668 * 25 23 21 28 28 H 1.48496 * 109.47369 * 245.01402 * 25 23 21 29 29 H 1.09004 * 109.47483 * 63.66149 * 1 2 3 30 30 H 1.08996 * 109.47288 * 183.66134 * 1 2 3 31 31 H 1.09003 * 109.47417 * 303.66325 * 1 2 3 32 32 H 1.08999 * 117.49364 * 145.03860 * 7 5 3 33 33 H 1.08995 * 117.53149 * 359.97438 * 7 5 3 34 34 H 1.08991 * 109.47187 * 43.11363 * 10 8 5 35 35 H 1.09006 * 109.47058 * 283.11084 * 10 8 5 36 36 H 0.97005 * 119.99687 * 342.64968 * 11 10 8 37 37 H 1.07993 * 119.88149 * 0.02562 * 16 15 12 38 38 H 1.08004 * 119.74266 * 180.02562 * 17 16 15 39 39 H 1.08005 * 119.88034 * 179.97438 * 18 17 16 40 40 H 1.08003 * 120.13079 * 180.32278 * 19 18 17 41 41 H 0.96995 * 119.99683 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4057 2.2080 0.0779 5 6 3.5630 1.2766 -0.0971 6 1 4.0599 0.3766 -0.4593 7 6 4.2957 2.1136 0.9546 8 6 4.1747 2.6251 -0.4823 9 1 5.0737 2.6122 -1.0985 10 6 3.2149 3.7884 -0.7401 11 7 3.9553 5.0517 -0.6942 12 16 3.2950 6.4226 -1.3476 13 8 4.1084 7.5048 -0.9158 14 8 1.8977 6.3530 -1.0986 15 6 3.4950 6.3161 -3.0950 16 6 2.4014 6.1054 -3.9038 17 6 2.5559 6.0218 -5.2788 18 6 3.8105 6.1484 -5.8552 19 6 4.9169 6.3657 -5.0664 20 6 4.7730 6.4464 -3.6688 21 6 5.9036 6.6628 -2.8477 22 1 5.9167 6.2845 -1.8362 23 6 7.0079 7.3621 -3.3477 24 7 6.8663 8.1612 -4.3738 25 14 8.6841 7.1546 -2.5499 26 1 8.6046 6.1124 -1.4950 27 1 9.6741 6.7439 -3.5777 28 1 9.1063 8.4423 -1.9427 29 1 -0.3634 0.4560 -0.9210 30 1 -0.3633 -1.0255 0.0656 31 1 -0.3634 0.5697 0.8553 32 1 5.2742 1.7639 1.2836 33 1 3.6918 2.6064 1.7165 34 1 2.4379 3.7945 0.0242 35 1 2.7573 3.6710 -1.7225 36 1 4.8323 5.0851 -0.2810 37 1 1.4194 6.0057 -3.4658 38 1 1.6922 5.8567 -5.9059 39 1 3.9192 6.0812 -6.9276 40 1 5.8926 6.4692 -5.5177 41 1 7.6316 8.6462 -4.7201 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885776269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:24 Heat of formation + Delta-G solvation = -135.699287 kcal Electronic energy + Delta-G solvation = -27653.956048 eV Core-core repulsion = 23625.788925 eV Total energy + Delta-G solvation = -4028.167123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.76272 -39.37818 -38.97299 -38.03321 -37.10974 -36.65462 -35.68899 -35.10472 -32.03756 -31.40281 -29.19060 -27.47101 -27.25069 -25.30872 -23.44337 -22.97197 -22.20947 -21.36664 -20.19407 -19.50272 -18.96424 -18.46325 -18.02700 -17.49533 -17.33220 -17.10114 -16.63761 -16.23622 -16.01885 -15.59668 -15.09271 -14.98745 -14.63203 -14.49313 -14.43806 -14.23065 -13.83848 -13.68422 -13.35738 -13.04180 -13.02012 -12.95490 -12.86917 -12.85119 -12.77226 -12.52345 -12.26009 -12.10425 -11.79617 -11.65128 -11.62283 -11.47544 -11.27548 -11.12297 -11.06519 -10.12369 -9.84059 -9.47865 -8.85210 -6.58031 -0.16568 0.53394 0.95710 0.99493 1.39375 1.51035 1.56717 1.70510 2.18272 2.33426 2.60170 2.81612 3.02957 3.44247 3.54294 3.73513 3.77425 3.82525 4.01751 4.28031 4.30960 4.31495 4.34417 4.46876 4.58208 4.66340 4.69266 4.71509 4.88036 4.90026 4.99136 5.05551 5.11046 5.22598 5.29584 5.50609 5.51363 5.69984 5.77274 5.97975 6.08239 6.28559 6.46015 6.67011 6.74188 6.82056 8.15005 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.004014 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.558591 B = 6973.300044 C = 7757.083443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.481 3.519 4 O -0.531 6.531 5 C -0.158 4.158 6 H 0.170 0.830 7 C -0.121 4.121 8 C -0.137 4.137 9 H 0.144 0.856 10 C 0.143 3.857 11 N -1.106 6.106 12 S 2.717 3.283 13 O -0.994 6.994 14 O -1.013 7.013 15 C -0.797 4.797 16 C -0.016 4.016 17 C -0.256 4.256 18 C -0.072 4.072 19 C -0.188 4.188 20 C 0.164 3.836 21 C -0.474 4.474 22 H 0.095 0.905 23 C 0.042 3.958 24 N -0.801 5.801 25 Si 0.977 3.023 26 H -0.240 1.240 27 H -0.256 1.256 28 H -0.270 1.270 29 H 0.058 0.942 30 H 0.134 0.866 31 H 0.060 0.940 32 H 0.149 0.851 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.422 0.578 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 -16.811 6.968 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.326 3.674 4 O -0.421 6.421 5 C -0.177 4.177 6 H 0.187 0.813 7 C -0.157 4.157 8 C -0.157 4.157 9 H 0.161 0.839 10 C 0.017 3.983 11 N -0.867 5.867 12 S 2.813 3.187 13 O -0.984 6.984 14 O -1.004 7.004 15 C -0.892 4.892 16 C -0.035 4.035 17 C -0.276 4.276 18 C -0.091 4.091 19 C -0.208 4.208 20 C 0.159 3.841 21 C -0.501 4.501 22 H 0.113 0.887 23 C -0.178 4.178 24 N -0.424 5.424 25 Si 0.796 3.204 26 H -0.162 1.162 27 H -0.180 1.180 28 H -0.195 1.195 29 H 0.077 0.923 30 H 0.152 0.848 31 H 0.078 0.922 32 H 0.167 0.833 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.258 0.742 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.125 0.875 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.422 -15.689 7.283 17.355 hybrid contribution 0.569 0.270 -0.727 0.962 sum -0.853 -15.419 6.555 16.777 Atomic orbital electron populations 1.23547 0.74897 1.05702 1.02422 1.86461 1.24776 1.32445 1.83706 1.23270 0.91518 0.81154 0.71416 1.90683 1.67899 1.36846 1.46718 1.22005 0.87090 0.98940 1.09703 0.81301 1.23389 1.02765 0.98623 0.90963 1.22631 1.00976 0.90686 1.01375 0.83870 1.21132 0.93519 0.81449 1.02178 1.55324 1.32248 1.24192 1.74916 1.00447 0.71673 0.72474 0.74141 1.93498 1.69974 1.52561 1.82410 1.93422 1.33568 1.87273 1.86103 1.30213 1.00052 1.35514 1.23375 1.20560 0.96042 0.92333 0.94593 1.20845 0.97471 1.14973 0.94292 1.21205 0.92965 0.95770 0.99139 1.21378 0.98071 1.07104 0.94216 1.17281 0.89882 0.83703 0.93195 1.20124 0.99433 1.30328 1.00242 0.88722 1.26886 1.04932 0.91415 0.94541 1.69868 1.34714 1.16553 1.21291 0.85235 0.75277 0.80134 0.79801 1.16220 1.17989 1.19469 0.92293 0.84757 0.92153 0.83319 0.88350 0.89578 0.92903 0.74195 0.86665 0.85675 0.85786 0.87510 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.62 113.37 1.20 1.64 16 2 O -0.36 -7.30 10.57 -51.44 -0.54 -7.85 16 3 C 0.48 11.56 7.63 71.23 0.54 12.11 16 4 O -0.53 -16.70 12.92 21.95 0.28 -16.42 16 5 C -0.16 -2.83 6.30 -11.51 -0.07 -2.90 16 6 H 0.17 1.95 8.14 -2.39 -0.02 1.93 16 7 C -0.12 -1.93 9.89 30.62 0.30 -1.63 16 8 C -0.14 -3.04 5.83 -10.79 -0.06 -3.10 16 9 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 10 C 0.14 4.63 4.92 86.38 0.42 5.05 16 11 N -1.11 -39.80 5.62 -187.49 -1.05 -40.85 16 12 S 2.72 126.08 5.14 -56.49 -0.29 125.79 16 13 O -0.99 -51.82 16.08 -128.00 -2.06 -53.88 16 14 O -1.01 -50.08 16.47 -128.00 -2.11 -52.19 16 15 C -0.80 -39.86 5.98 22.73 0.14 -39.72 16 16 C -0.02 -0.74 9.53 22.22 0.21 -0.52 16 17 C -0.26 -11.21 10.05 22.46 0.23 -10.98 16 18 C -0.07 -3.22 10.02 22.22 0.22 -3.00 16 19 C -0.19 -9.44 8.69 22.73 0.20 -9.24 16 20 C 0.16 8.57 5.51 -21.29 -0.12 8.45 16 21 C -0.47 -24.06 7.46 23.46 0.18 -23.89 16 22 H 0.09 4.47 5.86 -2.91 -0.02 4.45 16 23 C 0.04 2.00 5.02 85.26 0.43 2.43 16 24 N -0.80 -40.17 11.45 21.83 0.25 -39.92 16 25 Si 0.98 35.36 29.61 68.60 2.03 37.39 16 26 H -0.24 -8.02 7.11 99.48 0.71 -7.31 16 27 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 28 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 29 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.01 8.01 -2.39 -0.02 0.99 16 32 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 3.02 5.56 -2.39 -0.01 3.01 16 35 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.42 13.09 8.23 -96.74 -0.80 12.29 16 37 H 0.12 5.13 7.33 -2.91 -0.02 5.11 16 38 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 39 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 40 H 0.11 5.39 6.59 -2.91 -0.02 5.38 16 41 H 0.30 13.20 8.30 -92.71 -0.77 12.43 16 Total: -1.00 -73.43 359.62 0.62 -72.82 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: 0.28 Total: 40.41 kcal Atomic # 6 Polarization: -69.13 SS G_CDS: 3.82 Total: -65.31 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -0.80 Total: -80.77 kcal Atomic # 8 Polarization: -125.91 SS G_CDS: -4.43 Total: -130.33 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Atomic # 16 Polarization: 126.08 SS G_CDS: -0.29 Total: 125.79 kcal Total: -73.43 0.62 -72.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885776269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.881 kcal (2) G-P(sol) polarization free energy of solvation -73.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds