Wall clock time and date at job start Tue Mar 31 2020 22:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34236 * 117.00040 * 2 1 4 4 O 1.20825 * 119.99652 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00027 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46954 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.46820 * 179.97438 * 6 5 3 8 8 O 1.42907 * 109.46885 * 180.02562 * 7 6 5 9 9 N 1.41601 * 113.99866 * 180.02562 * 8 7 6 10 10 C 1.34781 * 119.99844 * 179.97438 * 9 8 7 11 11 O 1.21606 * 119.99855 * 359.97438 * 10 9 8 12 12 C 1.47428 * 119.99850 * 179.97438 * 10 9 8 13 13 C 1.39678 * 120.21400 * 0.02562 * 12 10 9 14 14 C 1.37804 * 119.93306 * 179.97438 * 13 12 10 15 15 C 1.38656 * 120.38754 * 0.02562 * 14 13 12 16 16 C 1.37915 * 120.43686 * 359.97438 * 15 14 13 17 17 C 1.39113 * 120.04584 * 359.97438 * 16 15 14 18 18 S 1.76204 * 120.18761 * 179.97438 * 17 16 15 19 19 C 1.76204 * 99.99719 * 6.86464 * 18 17 16 20 20 H 1.07991 * 120.00493 * 5.66058 * 19 18 17 21 21 C 1.38807 * 119.99763 * 185.65520 * 19 18 17 22 22 N 1.31561 * 120.00281 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00053 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46897 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46820 * 120.00182 * 23 21 19 26 26 H 1.48499 * 109.47420 * 240.00227 * 23 21 19 27 27 H 1.09004 * 109.47263 * 300.00153 * 1 2 3 28 28 H 1.08997 * 109.47468 * 60.00246 * 1 2 3 29 29 H 1.09006 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47049 * 59.99629 * 5 3 2 31 31 H 1.08999 * 109.46840 * 299.99406 * 5 3 2 32 32 H 1.08999 * 109.46930 * 59.99740 * 6 5 3 33 33 H 1.09000 * 109.46937 * 300.00074 * 6 5 3 34 34 H 1.08999 * 109.47526 * 60.00172 * 7 6 5 35 35 H 1.09000 * 109.47481 * 299.99808 * 7 6 5 36 36 H 0.96997 * 120.00122 * 359.97438 * 9 8 7 37 37 H 1.07997 * 120.03544 * 0.25294 * 13 12 10 38 38 H 1.08007 * 119.80795 * 179.97438 * 14 13 12 39 39 H 1.07996 * 119.78651 * 179.97438 * 15 14 13 40 40 H 1.07995 * 119.97769 * 179.97438 * 16 15 14 41 41 H 0.96998 * 120.00032 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 -0.0011 7 6 5.5279 2.8222 -0.0011 8 8 5.9331 4.1926 -0.0009 9 7 7.3369 4.3782 -0.0015 10 6 7.8520 5.6236 -0.0019 11 8 7.1112 6.5880 -0.0024 12 6 9.3136 5.8168 -0.0019 13 6 10.1686 4.7123 -0.0019 14 6 11.5339 4.8995 -0.0024 15 6 12.0662 6.1798 -0.0024 16 6 11.2365 7.2815 -0.0024 17 6 9.8556 7.1134 -0.0029 18 16 8.7920 8.5183 -0.0022 19 6 9.9811 9.8022 -0.2083 20 1 11.0178 9.5552 -0.3826 21 6 9.5852 11.1312 -0.1467 22 7 8.3223 11.4322 0.0661 23 14 10.8458 12.4924 -0.3644 24 1 12.1864 11.8942 -0.5887 25 1 10.4749 13.3278 -1.5348 26 1 10.8782 13.3371 0.8565 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9557 0.7809 -0.8907 31 1 3.9563 0.7807 0.8892 32 1 3.6106 3.2365 0.8889 33 1 3.6100 3.2360 -0.8911 34 1 5.9178 2.3278 -0.8908 35 1 5.9177 2.3285 0.8891 36 1 7.9278 3.6089 -0.0015 37 1 9.7602 3.7125 -0.0061 38 1 12.1931 4.0440 -0.0020 39 1 13.1376 6.3153 -0.0024 40 1 11.6591 8.2753 -0.0019 41 1 8.0457 12.3609 0.1095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888816393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:07 Heat of formation + Delta-G solvation = -113.063142 kcal Electronic energy + Delta-G solvation = -25200.418083 eV Core-core repulsion = 21173.232537 eV Total energy + Delta-G solvation = -4027.185546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53581 -40.88888 -39.15306 -38.33349 -37.63449 -35.17053 -34.76206 -33.51092 -31.79372 -31.35204 -29.38448 -27.84404 -27.35938 -24.82024 -23.56230 -23.36531 -21.96712 -21.44519 -20.11136 -19.32642 -18.60668 -18.41017 -17.83394 -17.53760 -17.35710 -17.05159 -16.97078 -16.26637 -15.85659 -15.63390 -15.38901 -15.06455 -14.88755 -14.73084 -14.53938 -14.11413 -13.95863 -13.54644 -13.53418 -13.31343 -13.00115 -12.95218 -12.85906 -12.53838 -12.48381 -12.44663 -12.03438 -11.85118 -11.63836 -11.63595 -11.51134 -11.42450 -11.32365 -10.41336 -10.02549 -9.94070 -9.74074 -8.48372 -8.44806 -6.25048 0.01071 0.54885 0.81964 1.14124 1.27357 1.36580 1.47087 1.64604 1.77353 1.98539 2.21685 2.87965 3.03393 3.23452 3.44368 3.61104 3.82126 3.87616 3.99544 4.07738 4.25673 4.28718 4.29653 4.33373 4.38373 4.42132 4.58608 4.61796 4.64818 4.71547 4.82702 4.96502 5.09958 5.11922 5.35215 5.37256 5.45784 5.56247 5.69137 5.82419 6.10567 6.16958 6.45579 6.68382 6.96209 7.38292 8.61173 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.002051 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.913347 B =13651.744960 C =15293.577485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.458 3.542 4 O -0.549 6.549 5 C -0.095 4.095 6 C -0.104 4.104 7 C 0.028 3.972 8 O -0.179 6.179 9 N -0.579 5.579 10 C 0.557 3.443 11 O -0.548 6.548 12 C -0.171 4.171 13 C -0.051 4.051 14 C -0.153 4.153 15 C -0.065 4.065 16 C -0.172 4.172 17 C -0.070 4.070 18 S 0.056 5.944 19 C -0.599 4.599 20 H 0.098 0.902 21 C 0.021 3.979 22 N -0.907 5.907 23 Si 0.997 3.003 24 H -0.254 1.254 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.134 0.866 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.425 0.575 37 H 0.167 0.833 38 H 0.172 0.828 39 H 0.152 0.848 40 H 0.120 0.880 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 -29.756 -0.092 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.303 3.697 4 O -0.439 6.439 5 C -0.133 4.133 6 C -0.143 4.143 7 C -0.048 4.048 8 O -0.184 6.184 9 N -0.284 5.284 10 C 0.346 3.654 11 O -0.427 6.427 12 C -0.185 4.185 13 C -0.071 4.071 14 C -0.176 4.176 15 C -0.086 4.086 16 C -0.197 4.197 17 C -0.188 4.188 18 S 0.316 5.684 19 C -0.745 4.745 20 H 0.116 0.884 21 C -0.185 4.185 22 N -0.542 5.542 23 Si 0.818 3.182 24 H -0.177 1.177 25 H -0.198 1.198 26 H -0.196 1.196 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.152 0.848 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.270 0.730 37 H 0.184 0.816 38 H 0.189 0.811 39 H 0.170 0.830 40 H 0.138 0.862 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.821 -28.110 0.035 28.369 hybrid contribution 1.083 1.029 -0.168 1.504 sum -2.738 -27.081 -0.133 27.220 Atomic orbital electron populations 1.23523 0.75111 1.05698 1.02259 1.86492 1.24725 1.32777 1.83747 1.24358 0.93369 0.80952 0.71061 1.90723 1.68441 1.37807 1.46913 1.21263 0.85529 0.97062 1.09399 1.21166 0.92955 0.96380 1.03781 1.23214 0.95306 0.82010 1.04316 1.90622 1.02503 1.27764 1.97547 1.47015 0.95012 1.07985 1.78391 1.18620 0.88441 0.81598 0.76698 1.90817 1.61028 1.40646 1.50159 1.19066 0.90076 0.93474 1.15932 1.21485 0.93737 0.96844 0.95011 1.21364 0.94772 0.97562 1.03859 1.21594 1.00502 0.92090 0.94410 1.21449 0.91731 1.00889 1.05669 1.22938 0.98709 0.97993 0.99205 1.85134 1.09253 0.93451 1.80596 1.24278 0.98706 0.94472 1.57056 0.88394 1.26217 0.98168 1.01191 0.92879 1.70159 1.17696 1.20388 1.45931 0.84942 0.78154 0.76837 0.78289 1.17697 1.19752 1.19551 0.92344 0.92339 0.84832 0.83933 0.83926 0.91894 0.91891 0.88873 0.88875 0.72977 0.81566 0.81081 0.82986 0.86194 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.08 10.57 -51.47 -0.54 -5.62 16 3 C 0.46 7.75 7.96 71.24 0.57 8.31 16 4 O -0.55 -14.32 15.73 21.97 0.35 -13.98 16 5 C -0.10 -0.85 5.81 29.85 0.17 -0.68 16 6 C -0.10 -1.75 4.87 30.59 0.15 -1.60 16 7 C 0.03 0.43 6.23 71.98 0.45 0.87 16 8 O -0.18 -5.38 11.11 -21.44 -0.24 -5.62 16 9 N -0.58 -16.48 6.34 -175.88 -1.12 -17.60 16 10 C 0.56 22.74 7.89 86.66 0.68 23.42 16 11 O -0.55 -29.52 14.18 13.30 0.19 -29.33 16 12 C -0.17 -6.47 5.89 -19.95 -0.12 -6.59 16 13 C -0.05 -1.23 9.53 22.52 0.21 -1.02 16 14 C -0.15 -3.29 10.02 22.27 0.22 -3.07 16 15 C -0.06 -1.81 10.03 22.29 0.22 -1.58 16 16 C -0.17 -6.93 9.22 22.40 0.21 -6.72 16 17 C -0.07 -3.26 6.14 23.04 0.14 -3.12 16 18 S 0.06 3.32 18.56 -56.49 -1.05 2.27 16 19 C -0.60 -35.21 9.00 67.96 0.61 -34.60 16 20 H 0.10 5.37 4.98 -2.91 -0.01 5.36 16 21 C 0.02 1.21 5.49 84.87 0.47 1.67 16 22 N -0.91 -56.72 13.22 21.65 0.29 -56.43 16 23 Si 1.00 44.33 29.55 68.60 2.03 46.36 16 24 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 28 H 0.06 0.68 8.13 -2.39 -0.02 0.67 16 29 H 0.13 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 33 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.42 7.13 6.57 -92.71 -0.61 6.52 16 37 H 0.17 2.13 6.40 -2.91 -0.02 2.11 16 38 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.12 5.26 5.03 -2.91 -0.01 5.24 16 41 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -94.03 369.82 5.56 -88.46 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.47 Total: 14.69 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 5.19 Total: -23.21 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -0.83 Total: -74.03 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -0.25 Total: -54.55 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.05 Total: 2.27 kcal Total: -94.03 5.56 -88.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888816393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.599 kcal (2) G-P(sol) polarization free energy of solvation -94.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds