Wall clock time and date at job start Tue Mar 31 2020 22:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34714 * 117.00206 * 2 1 4 4 O 1.21471 * 119.99323 * 0.02562 * 3 2 1 5 5 C 1.47741 * 120.00107 * 180.02562 * 3 2 1 6 6 C 1.39658 * 120.04646 * 359.95285 * 5 3 2 7 7 C 1.37915 * 119.68403 * 179.97438 * 6 5 3 8 8 C 1.38355 * 120.35892 * 0.05440 * 7 6 5 9 9 C 1.38723 * 120.71448 * 359.97438 * 8 7 6 10 10 C 1.39243 * 120.04684 * 180.02562 * 5 3 2 11 11 N 1.39644 * 111.63457 * 179.97438 * 9 8 7 12 12 S 1.65598 * 124.95469 * 180.02562 * 11 9 8 13 13 O 1.42098 * 104.27631 * 26.01706 * 12 11 9 14 14 O 1.42102 * 104.27702 * 153.87579 * 12 11 9 15 15 C 1.81396 * 104.44860 * 269.94658 * 12 11 9 16 16 C 1.52999 * 109.47140 * 180.02562 * 15 12 11 17 17 C 1.50702 * 109.47174 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99967 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00133 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99983 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00048 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47162 * 90.00029 * 21 19 17 23 23 H 1.48501 * 109.46916 * 209.99900 * 21 19 17 24 24 H 1.48499 * 109.47184 * 329.99859 * 21 19 17 25 25 C 1.46517 * 110.08952 * 359.97438 * 11 9 8 26 26 C 1.51275 * 130.79103 * 179.97438 * 8 7 6 27 27 H 1.09000 * 109.47470 * 59.99951 * 1 2 3 28 28 H 1.09005 * 109.47339 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46867 * 299.99648 * 1 2 3 30 30 H 1.07998 * 120.16005 * 0.02952 * 6 5 3 31 31 H 1.08003 * 119.81797 * 180.32906 * 7 6 5 32 32 H 1.08001 * 119.91988 * 0.02562 * 10 5 3 33 33 H 1.08999 * 109.47521 * 300.00410 * 15 12 11 34 34 H 1.08996 * 109.47128 * 59.99856 * 15 12 11 35 35 H 1.08995 * 109.47314 * 300.00053 * 16 15 12 36 36 H 1.08998 * 109.46840 * 60.00102 * 16 15 12 37 37 H 0.97002 * 120.00007 * 180.02562 * 20 19 17 38 38 H 1.08994 * 110.29965 * 241.06579 * 25 11 9 39 39 H 1.09002 * 110.37309 * 118.98184 * 25 11 9 40 40 H 1.09007 * 110.41614 * 298.81118 * 26 8 7 41 41 H 1.09007 * 110.41680 * 61.26385 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5390 1.2776 -0.0006 6 6 4.3005 0.1069 -0.0001 7 6 5.6773 0.1878 -0.0012 8 6 6.3054 1.4206 -0.0016 9 6 5.5644 2.5933 -0.0014 10 6 4.1722 2.5177 0.0000 11 7 6.3867 3.7219 -0.0013 12 16 5.8484 5.2880 -0.0005 13 8 4.5644 5.2169 0.6040 14 8 6.9041 6.0210 0.6058 15 6 5.7022 5.7172 -1.7569 16 6 5.2075 7.1589 -1.8901 17 6 5.0866 7.5157 -3.3493 18 1 5.3372 6.7869 -4.1059 19 6 4.6552 8.7721 -3.7183 20 7 4.3496 9.6594 -2.7969 21 14 4.5047 9.2141 -5.5270 22 1 3.1407 8.8763 -6.0073 23 1 4.7451 10.6690 -5.7026 24 1 5.5086 8.4486 -6.3089 25 6 7.7952 3.3184 -0.0008 26 6 7.7745 1.7812 -0.0022 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.8137 -0.8571 0.0002 31 1 6.2684 -0.7161 -0.0062 32 1 3.5834 3.4232 0.0012 33 1 6.6763 5.6219 -2.2366 34 1 4.9931 5.0435 -2.2377 35 1 4.2335 7.2546 -1.4104 36 1 5.9170 7.8323 -1.4093 37 1 4.0457 10.5432 -3.0565 38 1 8.2946 3.6898 0.8940 39 1 8.2967 3.6897 -0.8945 40 1 8.2615 1.3939 0.8928 41 1 8.2606 1.3948 -0.8981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901986842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:11 Heat of formation + Delta-G solvation = -124.463049 kcal Electronic energy + Delta-G solvation = -27165.968642 eV Core-core repulsion = 23138.288759 eV Total energy + Delta-G solvation = -4027.679883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.94390 -40.09086 -37.02397 -36.70101 -36.28328 -35.67134 -33.96169 -32.52609 -31.23791 -30.21463 -29.47051 -27.73450 -25.68216 -24.12322 -23.07190 -22.43680 -21.52153 -20.82182 -19.29620 -18.03689 -17.22587 -17.12774 -16.64110 -16.46473 -16.30510 -16.14196 -15.44206 -15.17811 -14.90520 -14.61609 -14.40894 -13.95191 -13.60195 -13.56717 -13.41916 -12.88414 -12.69317 -12.66346 -12.47538 -12.28221 -12.00194 -11.87980 -11.83743 -11.75890 -11.71906 -11.11301 -11.04466 -11.00033 -10.94507 -10.72031 -10.61783 -10.46626 -10.41790 -9.78381 -9.26869 -9.09502 -8.53295 -8.06340 -6.15352 -4.21485 0.42058 0.53516 1.21271 2.40328 2.43200 2.74017 3.25228 3.31278 3.33798 3.56525 4.03555 4.08320 4.11602 4.34955 4.47899 4.57037 4.79172 4.84721 4.86113 4.93452 5.02477 5.07301 5.10143 5.19936 5.33489 5.38219 5.46476 5.55708 5.56946 5.65000 5.67173 5.87144 6.00080 6.12108 6.17708 6.26897 6.37121 6.38305 6.72966 7.22977 7.28717 7.64549 7.77115 8.12191 8.81473 9.43569 10.95648 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010365 B = 0.003660 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.836107 B = 7648.011645 C = 9298.532366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.507 3.493 4 O -0.491 6.491 5 C -0.094 4.094 6 C -0.092 4.092 7 C -0.091 4.091 8 C -0.103 4.103 9 C 0.162 3.838 10 C -0.090 4.090 11 N -0.943 5.943 12 S 2.580 3.420 13 O -0.945 6.945 14 O -0.949 6.949 15 C -0.580 4.580 16 C 0.028 3.972 17 C -0.521 4.521 18 H 0.062 0.938 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.112 3.888 26 C -0.084 4.084 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.162 0.838 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.266 0.734 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.050 -23.745 5.535 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.351 3.649 4 O -0.378 6.378 5 C -0.096 4.096 6 C -0.111 4.111 7 C -0.109 4.109 8 C -0.108 4.108 9 C 0.064 3.936 10 C -0.112 4.112 11 N -0.763 5.763 12 S 2.682 3.318 13 O -0.935 6.935 14 O -0.939 6.939 15 C -0.714 4.714 16 C -0.011 4.011 17 C -0.561 4.561 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.527 5.527 21 Si 0.728 3.272 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.197 1.197 25 C -0.012 4.012 26 C -0.122 4.122 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.159 0.841 31 H 0.152 0.848 32 H 0.180 0.820 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.652 -22.574 6.403 23.613 hybrid contribution -0.276 0.296 -1.578 1.629 sum 2.377 -22.277 4.825 22.917 Atomic orbital electron populations 1.23289 0.75920 1.03633 1.02904 1.86512 1.23573 1.32595 1.84640 1.21131 0.89029 0.81537 0.73249 1.90911 1.66566 1.35859 1.44498 1.18604 0.89001 0.93966 1.08010 1.21243 0.93330 0.97761 0.98795 1.20334 0.93910 0.96107 1.00588 1.20466 0.95534 0.92538 1.02262 1.17808 0.90583 0.86755 0.98406 1.21113 0.91743 0.99212 0.99126 1.56761 1.13094 1.22034 1.84422 1.06337 0.74219 0.71244 0.80026 1.93566 1.40671 1.83965 1.75299 1.93563 1.56582 1.68542 1.75230 1.30442 1.10584 1.11261 1.19152 1.19007 0.97413 0.84349 1.00313 1.20964 1.46154 0.98429 0.90538 0.91955 1.25064 0.94946 0.96262 0.98130 1.69952 1.44132 1.05646 1.32985 0.86447 0.78605 0.77724 0.84392 1.20388 1.20947 1.19728 1.21914 0.80370 0.95119 1.03809 1.21175 0.92697 0.94333 1.04037 0.91662 0.88011 0.91738 0.84087 0.84842 0.82011 0.85868 0.85826 0.94583 0.94689 0.92445 0.89206 0.89617 0.88790 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -3.99 9.81 -40.53 -0.40 -4.38 16 3 C 0.51 7.22 7.90 34.61 0.27 7.49 16 4 O -0.49 -8.69 16.12 -19.24 -0.31 -9.00 16 5 C -0.09 -1.27 5.86 -105.11 -0.62 -1.88 16 6 C -0.09 -0.92 9.62 -39.17 -0.38 -1.29 16 7 C -0.09 -0.81 10.02 -39.66 -0.40 -1.20 16 8 C -0.10 -1.10 6.23 -104.12 -0.65 -1.75 16 9 C 0.16 2.30 6.59 -83.68 -0.55 1.75 16 10 C -0.09 -1.42 8.92 -38.77 -0.35 -1.76 16 11 N -0.94 -13.66 3.40 -58.16 -0.20 -13.86 16 12 S 2.58 47.77 5.56 -107.50 -0.60 47.17 16 13 O -0.94 -20.07 15.24 -57.54 -0.88 -20.95 16 14 O -0.95 -19.44 17.56 -57.54 -1.01 -20.45 16 15 C -0.58 -11.25 6.12 37.16 0.23 -11.02 16 16 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 17 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 18 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 21 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 C 0.11 1.18 7.08 -3.65 -0.03 1.15 16 26 C -0.08 -0.67 6.94 -27.22 -0.19 -0.86 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.14 1.07 7.61 -52.49 -0.40 0.67 16 31 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 32 H 0.16 2.97 5.66 -52.49 -0.30 2.67 16 33 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 34 H 0.12 2.22 8.14 -51.93 -0.42 1.80 16 35 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -36.69 364.13 -9.63 -46.32 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.31 Total: -0.22 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -2.13 Total: -20.60 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.54 Total: -39.61 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -2.59 Total: -54.79 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 47.77 SS G_CDS: -0.60 Total: 47.17 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.69 -9.63 -46.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901986842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.144 kcal (2) G-P(sol) polarization free energy of solvation -36.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds