Wall clock time and date at job start Tue Mar 31 2020 22:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 117.00571 * 2 1 4 4 O 1.20827 * 119.99534 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00388 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47039 * 304.99896 * 5 3 2 7 7 C 1.53001 * 109.47188 * 64.99381 * 5 3 2 8 8 N 1.46507 * 109.47156 * 184.99802 * 7 5 3 9 9 C 1.34772 * 119.99843 * 179.97438 * 8 7 5 10 10 O 1.21281 * 120.00358 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.99643 * 179.97438 * 9 8 7 12 12 S 1.81004 * 109.47188 * 180.02562 * 11 9 8 13 13 C 1.76191 * 100.00154 * 180.02562 * 12 11 9 14 14 H 1.08005 * 120.00363 * 359.97438 * 13 12 11 15 15 C 1.38800 * 119.99895 * 180.02562 * 13 12 11 16 16 N 1.31628 * 120.00226 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00095 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46906 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46950 * 119.99624 * 17 15 13 20 20 H 1.48492 * 109.47427 * 240.00098 * 17 15 13 21 21 O 1.42896 * 109.47154 * 184.99798 * 5 3 2 22 22 C 1.35899 * 117.00152 * 84.67855 * 21 5 3 23 23 C 1.38737 * 120.05309 * 174.25275 * 22 21 5 24 24 C 1.38142 * 119.93915 * 179.74750 * 23 22 21 25 25 C 1.38271 * 120.05856 * 0.49927 * 24 23 22 26 26 C 1.38267 * 120.10706 * 359.77417 * 25 24 23 27 27 C 1.38134 * 120.05888 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47308 * 300.00714 * 1 2 3 29 29 H 1.09004 * 109.46361 * 60.00454 * 1 2 3 30 30 H 1.08994 * 109.47353 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47151 * 304.99893 * 7 5 3 32 32 H 1.09000 * 109.47037 * 65.00535 * 7 5 3 33 33 H 0.96997 * 119.99628 * 0.02562 * 8 7 5 34 34 H 1.08996 * 109.47783 * 300.00444 * 11 9 8 35 35 H 1.09005 * 109.47113 * 60.00926 * 11 9 8 36 36 H 0.97004 * 120.00182 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.03103 * 359.97438 * 23 22 21 38 38 H 1.08003 * 119.97363 * 180.27272 * 24 23 22 39 39 H 1.07996 * 119.94101 * 179.74694 * 25 24 23 40 40 H 1.08002 * 119.96751 * 179.97438 * 26 25 24 41 41 H 1.08004 * 120.03271 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9597 0.7053 0.8427 7 6 4.1081 0.6922 -1.3064 8 7 5.5720 0.6590 -1.2565 9 6 6.2712 0.1812 -2.3049 10 8 5.6888 -0.2207 -3.2898 11 6 7.7770 0.1476 -2.2538 12 16 8.4179 -0.5417 -3.7998 13 6 10.1479 -0.4664 -3.4745 14 1 10.5038 -0.0743 -2.5332 15 6 11.0534 -0.9102 -4.4282 16 7 10.6197 -1.3877 -5.5756 17 14 12.8876 -0.8297 -4.0836 18 1 13.1126 -0.2562 -2.7324 19 1 13.4629 -2.1974 -4.1434 20 1 13.5453 0.0289 -5.1010 21 8 3.9718 2.6400 0.1178 22 6 4.0442 3.1565 1.3728 23 6 4.5441 4.4356 1.5699 24 6 4.6118 4.9603 2.8460 25 6 4.1914 4.2080 3.9273 26 6 3.6981 2.9309 3.7340 27 6 3.6236 2.4036 2.4594 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.7260 -0.3199 -1.4390 32 1 3.7872 1.3142 -2.1420 33 1 6.0377 0.9801 -0.4686 34 1 8.1589 1.1599 -2.1218 35 1 8.0983 -0.4739 -1.4178 36 1 11.2525 -1.6974 -6.2424 37 1 4.8766 5.0219 0.7261 38 1 4.9967 5.9576 2.9996 39 1 4.2490 4.6186 4.9245 40 1 3.3708 2.3451 4.5803 41 1 3.2385 1.4058 2.3089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918118493.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:52 Heat of formation + Delta-G solvation = -148.642603 kcal Electronic energy + Delta-G solvation = -26072.680743 eV Core-core repulsion = 22043.952356 eV Total energy + Delta-G solvation = -4028.728387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.33990 -40.85695 -40.56044 -38.67619 -37.57776 -36.04799 -34.56783 -32.82390 -31.90931 -30.82575 -30.28533 -28.40225 -27.64587 -25.49596 -23.75989 -23.50181 -22.05677 -21.72276 -19.92956 -19.70144 -19.13566 -18.37575 -17.95752 -17.47300 -17.09619 -17.04009 -16.86486 -16.67817 -16.47675 -15.80497 -15.57392 -15.48805 -14.86332 -14.72250 -14.54707 -14.43370 -14.31168 -14.23554 -14.14174 -13.42028 -13.15300 -13.14156 -12.93338 -12.89796 -12.77670 -12.58427 -12.53003 -11.94274 -11.83984 -11.76766 -11.67224 -11.14370 -11.02562 -10.29141 -10.25683 -10.00080 -9.30161 -8.64712 -8.33330 -6.10856 0.33459 0.40447 0.72189 1.18608 1.30284 1.42873 1.48133 1.56283 1.59342 1.86272 2.24813 2.29310 2.80208 3.01143 3.18990 3.31502 3.44102 3.49792 3.83684 3.87944 3.95369 4.17804 4.22486 4.25773 4.27657 4.33245 4.43914 4.49061 4.51601 4.53796 4.66002 4.67493 5.03504 5.08815 5.20341 5.25027 5.42838 5.44300 5.56685 5.71625 6.17803 6.21862 6.36312 6.43640 7.08446 7.14620 8.76076 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.002461 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.543906 B =11373.460806 C =13118.314036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.447 3.553 4 O -0.511 6.511 5 C 0.094 3.906 6 H 0.149 0.851 7 C 0.137 3.863 8 N -0.709 5.709 9 C 0.540 3.460 10 O -0.559 6.559 11 C -0.130 4.130 12 S -0.149 6.149 13 C -0.544 4.544 14 H 0.083 0.917 15 C 0.013 3.987 16 N -0.912 5.912 17 Si 0.999 3.001 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.275 1.275 21 O -0.294 6.294 22 C 0.103 3.897 23 C -0.163 4.163 24 C -0.083 4.083 25 C -0.157 4.157 26 C -0.083 4.083 27 C -0.218 4.218 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.136 0.864 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.418 0.582 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.271 0.729 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.598 7.905 23.585 30.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.288 3.712 4 O -0.398 6.398 5 C 0.035 3.965 6 H 0.166 0.834 7 C 0.013 3.987 8 N -0.364 5.364 9 C 0.326 3.674 10 O -0.437 6.437 11 C -0.281 4.281 12 S 0.078 5.922 13 C -0.692 4.692 14 H 0.102 0.898 15 C -0.192 4.192 16 N -0.548 5.548 17 Si 0.820 3.180 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.201 1.201 21 O -0.207 6.207 22 C 0.059 3.941 23 C -0.181 4.181 24 C -0.100 4.100 25 C -0.175 4.175 26 C -0.101 4.101 27 C -0.237 4.237 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.154 0.846 31 H 0.131 0.869 32 H 0.089 0.911 33 H 0.255 0.745 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.149 0.851 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.754 7.561 21.616 29.599 hybrid contribution 1.339 0.546 1.058 1.792 sum -17.415 8.107 22.674 29.717 Atomic orbital electron populations 1.23663 0.73949 1.06211 1.02816 1.86515 1.25587 1.31466 1.83217 1.24073 0.92163 0.82217 0.72743 1.90722 1.66997 1.37287 1.44803 1.22134 0.87519 0.84012 1.02811 0.83385 1.21260 0.80854 1.02353 0.94213 1.45513 1.05954 1.65436 1.19524 1.20023 0.88934 0.76167 0.82255 1.90712 1.71723 1.47801 1.33424 1.23364 0.94039 1.06409 1.04255 1.85577 1.04979 1.82212 1.19443 1.23236 0.91279 1.48799 1.05885 0.89841 1.26121 1.05197 0.93835 0.94046 1.70187 1.36967 1.40382 1.07282 0.84907 0.75955 0.78201 0.78897 1.17985 1.19928 1.20090 1.86287 1.81565 1.26087 1.26767 1.19304 0.97295 0.94460 0.83033 1.20704 1.04451 0.93699 0.99280 1.21343 0.97013 1.00717 0.90966 1.21484 1.00969 0.94825 1.00225 1.21292 0.96542 0.95945 0.96336 1.21371 1.07405 1.01319 0.93555 0.91332 0.91983 0.84553 0.86947 0.91099 0.74477 0.87218 0.86654 0.92020 0.85050 0.82962 0.83242 0.83311 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.96 10.53 -51.41 -0.54 -6.50 16 3 C 0.45 9.23 6.34 71.23 0.45 9.68 16 4 O -0.51 -13.74 16.13 28.38 0.46 -13.28 16 5 C 0.09 1.72 2.18 29.85 0.07 1.79 16 6 H 0.15 1.82 6.33 -2.39 -0.02 1.80 16 7 C 0.14 3.03 5.32 86.38 0.46 3.49 16 8 N -0.71 -17.27 5.50 -463.06 -2.55 -19.82 16 9 C 0.54 19.23 7.85 87.66 0.69 19.91 16 10 O -0.56 -25.07 15.86 -3.03 -0.05 -25.12 16 11 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 12 S -0.15 -8.18 20.57 -56.49 -1.16 -9.34 16 13 C -0.54 -30.73 9.50 67.95 0.65 -30.09 16 14 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 15 C 0.01 0.72 5.49 84.86 0.47 1.18 16 16 N -0.91 -55.74 13.22 21.65 0.29 -55.45 16 17 Si 1.00 43.33 29.55 68.60 2.03 45.35 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 21 O -0.29 -6.55 9.32 -73.39 -0.68 -7.23 16 22 C 0.10 2.11 6.46 22.51 0.15 2.26 16 23 C -0.16 -3.08 9.99 22.37 0.22 -2.86 16 24 C -0.08 -1.18 10.04 22.25 0.22 -0.96 16 25 C -0.16 -1.97 10.04 22.28 0.22 -1.75 16 26 C -0.08 -1.12 10.04 22.25 0.22 -0.89 16 27 C -0.22 -3.64 8.70 22.36 0.19 -3.45 16 28 H 0.07 0.76 8.13 -2.39 -0.02 0.74 16 29 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 30 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 2.34 8.11 -2.39 -0.02 2.33 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.42 7.65 8.47 -92.71 -0.79 6.87 16 34 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 35 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 41 H 0.13 1.79 5.68 -2.91 -0.02 1.78 16 Total: -1.00 -81.79 376.48 3.71 -78.08 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.28 Total: 18.03 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 5.65 Total: -4.72 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -2.26 Total: -75.27 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -0.82 Total: -52.13 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.34 kcal Total: -81.79 3.71 -78.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918118493.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.567 kcal (2) G-P(sol) polarization free energy of solvation -81.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds