Wall clock time and date at job start Tue Mar 31 2020 23:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39591 * 120.10191 * 255.96600 * 3 2 1 5 5 C 1.37923 * 119.78022 * 179.97438 * 4 3 2 6 6 C 1.38299 * 120.13827 * 0.25366 * 5 4 3 7 7 C 1.38575 * 120.42106 * 359.49158 * 6 5 4 8 8 C 1.37812 * 120.01961 * 0.50661 * 7 6 5 9 9 C 1.50757 * 108.93081 * 179.77899 * 8 7 6 10 10 N 1.46646 * 107.67949 * 0.02562 * 9 8 7 11 11 C 1.34784 * 126.58591 * 179.97438 * 10 9 8 12 12 O 1.21589 * 119.99801 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99763 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00021 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.47012 * 325.00490 * 14 13 11 16 16 C 1.50699 * 109.47112 * 205.00261 * 14 13 11 17 17 H 1.07993 * 120.00154 * 265.30525 * 16 14 13 18 18 C 1.37883 * 120.00106 * 85.31262 * 16 14 13 19 19 N 1.31509 * 119.99901 * 185.03468 * 18 16 14 20 20 Si 1.86800 * 119.99716 * 5.03779 * 18 16 14 21 21 H 1.48500 * 109.47328 * 84.64887 * 20 18 16 22 22 H 1.48500 * 109.46916 * 204.64933 * 20 18 16 23 23 H 1.48507 * 109.47187 * 324.64390 * 20 18 16 24 24 C 1.52995 * 109.47063 * 84.99980 * 14 13 11 25 25 F 1.39909 * 109.46679 * 64.14538 * 24 14 13 26 26 F 1.39900 * 109.47154 * 184.14003 * 24 14 13 27 27 F 1.39894 * 109.47446 * 304.14452 * 24 14 13 28 28 C 1.46632 * 106.82601 * 359.97438 * 10 9 8 29 29 H 1.07998 * 120.10548 * 0.02562 * 4 3 2 30 30 H 1.08003 * 119.92816 * 179.97438 * 5 4 3 31 31 H 1.07996 * 119.78627 * 179.74767 * 6 5 4 32 32 H 1.08996 * 109.81543 * 119.54433 * 9 8 7 33 33 H 1.09000 * 109.81771 * 240.46109 * 9 8 7 34 34 H 0.97005 * 119.99971 * 0.02562 * 13 11 10 35 35 H 0.97007 * 119.99810 * 179.97438 * 19 18 16 36 36 H 1.08997 * 109.81074 * 119.54417 * 28 10 9 37 37 H 1.08993 * 109.81520 * 240.38545 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 0.2938 1.1716 5 6 4.6472 0.2920 1.1642 6 6 5.3350 0.0060 -0.0010 7 6 4.6473 -0.2912 -1.1668 8 6 3.2692 -0.2928 -1.1730 9 6 2.7867 -0.6402 -2.5584 10 7 3.9679 -0.8521 -3.4012 11 6 3.9735 -1.1806 -4.7084 12 8 2.9231 -1.3293 -5.3024 13 7 5.1436 -1.3432 -5.3572 14 6 5.1498 -1.7008 -6.7779 15 1 4.3098 -2.3624 -6.9897 16 6 6.4399 -2.4037 -7.1133 17 1 7.2728 -1.8429 -7.5109 18 6 6.5568 -3.7628 -6.9128 19 7 7.7117 -4.3598 -7.1112 20 14 5.0748 -4.7562 -6.3595 21 1 4.2639 -5.1370 -7.5438 22 1 5.5343 -5.9824 -5.6591 23 1 4.2480 -3.9388 -5.4355 24 6 5.0254 -0.4319 -7.6237 25 9 6.1509 0.3745 -7.4227 26 9 4.9364 -0.7797 -8.9759 27 9 3.8755 0.2695 -7.2459 28 6 5.1416 -0.6380 -2.5487 29 1 2.7313 0.5204 2.0810 30 1 5.1912 0.5189 2.0692 31 1 6.4149 0.0102 -0.0013 32 1 2.1895 -1.5513 -2.5240 33 1 2.1894 0.1793 -2.9580 34 1 5.9816 -1.2242 -4.8834 35 1 7.7941 -5.3160 -6.9698 36 1 5.7403 -1.5480 -2.5091 37 1 5.7411 0.1816 -2.9445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932895633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:05 Heat of formation + Delta-G solvation = -113.614081 kcal Electronic energy + Delta-G solvation = -29271.662349 eV Core-core repulsion = 24599.444972 eV Total energy + Delta-G solvation = -4672.217377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.094 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.07820 -46.58536 -46.57329 -41.00030 -39.17198 -36.94798 -36.16175 -34.80932 -32.68201 -32.16440 -31.37827 -29.10565 -27.96123 -25.58444 -25.00346 -23.30990 -21.89673 -21.30277 -19.88864 -18.75643 -18.40442 -17.58264 -17.42654 -16.88026 -16.50373 -16.29395 -16.10744 -15.76611 -15.40130 -14.65034 -14.35970 -14.32428 -13.68717 -13.58134 -13.44218 -13.41508 -13.30082 -13.08995 -13.04803 -13.04570 -12.99490 -12.77209 -12.74047 -12.67855 -12.57858 -12.30902 -11.78873 -11.64180 -11.58480 -11.17857 -10.72226 -10.22309 -9.89119 -9.82160 -9.41770 -9.25806 -9.03210 -8.60302 -8.22730 -6.58705 -4.74042 0.36545 0.81856 2.39943 2.60990 2.67124 3.11190 3.18441 3.29392 3.44868 3.51851 3.52691 3.85005 3.92702 4.07460 4.14083 4.25964 4.56266 4.83107 4.88317 4.94911 5.05868 5.14556 5.18306 5.27963 5.31991 5.39127 5.47035 5.50043 5.57924 5.77355 5.88600 5.93233 6.16997 6.31429 6.34424 6.83695 7.11737 7.20498 7.32917 7.84481 8.46206 8.47849 8.97089 9.02274 10.49037 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.003614 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.133974 B = 7745.050211 C = 8196.019649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.252 3.748 3 C -0.007 4.007 4 C -0.067 4.067 5 C -0.117 4.117 6 C -0.064 4.064 7 C -0.097 4.097 8 C -0.054 4.054 9 C 0.164 3.836 10 N -0.639 5.639 11 C 0.721 3.279 12 O -0.582 6.582 13 N -0.723 5.723 14 C 0.221 3.779 15 H 0.088 0.912 16 C -0.536 4.536 17 H 0.096 0.904 18 C 0.102 3.898 19 N -0.857 5.857 20 Si 0.868 3.132 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.252 1.252 24 C 0.440 3.560 25 F -0.190 7.190 26 F -0.184 7.184 27 F -0.194 7.194 28 C 0.142 3.858 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.397 0.603 35 H 0.276 0.724 36 H 0.088 0.912 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 7.787 16.193 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.064 4.064 3 C -0.011 4.011 4 C -0.088 4.088 5 C -0.135 4.135 6 C -0.083 4.083 7 C -0.098 4.098 8 C -0.057 4.057 9 C 0.040 3.960 10 N -0.379 5.379 11 C 0.424 3.576 12 O -0.459 6.459 13 N -0.378 5.378 14 C 0.118 3.882 15 H 0.106 0.894 16 C -0.574 4.574 17 H 0.114 0.886 18 C -0.109 4.109 19 N -0.489 5.489 20 Si 0.693 3.307 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.176 1.176 24 C 0.384 3.616 25 F -0.172 7.172 26 F -0.166 7.166 27 F -0.175 7.175 28 C 0.018 3.982 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.233 0.767 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.578 7.480 15.553 17.625 hybrid contribution 0.186 -0.315 0.448 0.579 sum -3.392 7.164 16.002 17.857 Atomic orbital electron populations 1.81268 1.11967 1.08325 1.07039 1.25671 0.92643 0.94024 0.94049 1.15321 0.84173 1.07659 0.93918 1.21104 0.94481 0.97049 0.96147 1.21011 0.93474 1.00598 0.98411 1.20785 1.00781 0.96093 0.90637 1.20285 0.93486 1.00530 0.95502 1.20348 0.94612 0.96905 0.93874 1.19989 0.88810 1.02174 0.84984 1.47079 1.06512 1.75949 1.08405 1.15737 0.85713 0.77681 0.78484 1.90909 1.31158 1.58509 1.65298 1.46936 1.06027 1.73234 1.11641 1.19926 1.02567 0.88125 0.77613 0.89424 1.20796 0.97304 0.93636 1.45666 0.88631 1.24968 0.96041 0.97353 0.92530 1.69863 1.23781 1.11509 1.43780 0.86932 0.83049 0.80097 0.80620 1.19119 1.20689 1.17578 1.21591 0.72549 0.87580 0.79891 1.93077 1.52947 1.76216 1.94935 1.93103 1.95948 1.92209 1.35335 1.93145 1.51498 1.81762 1.91138 1.20313 0.89458 1.02243 0.86169 0.84448 0.84262 0.84557 0.89851 0.89721 0.76745 0.91396 0.89410 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.57 18.54 41.84 0.78 -4.80 16 2 C 0.25 2.83 15.10 -22.47 -0.34 2.49 16 3 C -0.01 -0.06 5.73 -106.89 -0.61 -0.68 16 4 C -0.07 -0.43 9.76 -39.19 -0.38 -0.81 16 5 C -0.12 -0.62 10.03 -39.67 -0.40 -1.01 16 6 C -0.06 -0.41 10.04 -39.43 -0.40 -0.81 16 7 C -0.10 -0.91 6.21 -104.60 -0.65 -1.56 16 8 C -0.05 -0.57 6.09 -104.18 -0.63 -1.21 16 9 C 0.16 2.23 6.62 -5.09 -0.03 2.20 16 10 N -0.64 -9.91 3.34 -181.86 -0.61 -10.52 16 11 C 0.72 14.35 7.81 -86.92 -0.68 13.67 16 12 O -0.58 -13.66 15.32 5.29 0.08 -13.58 16 13 N -0.72 -14.37 4.90 -59.81 -0.29 -14.67 16 14 C 0.22 5.01 1.45 -69.09 -0.10 4.91 16 15 H 0.09 2.13 5.34 -51.93 -0.28 1.85 16 16 C -0.54 -13.28 8.68 -34.44 -0.30 -13.58 16 17 H 0.10 2.56 7.69 -52.49 -0.40 2.15 16 18 C 0.10 2.57 5.47 -17.82 -0.10 2.47 16 19 N -0.86 -22.81 13.96 55.43 0.77 -22.03 16 20 Si 0.87 19.77 26.92 -169.99 -4.58 15.20 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.25 -5.84 6.82 56.52 0.39 -5.45 16 24 C 0.44 9.68 2.83 37.16 0.11 9.79 16 25 F -0.19 -4.03 16.65 2.25 0.04 -3.99 16 26 F -0.18 -4.11 17.12 2.25 0.04 -4.07 16 27 F -0.19 -4.28 15.56 2.25 0.04 -4.25 16 28 C 0.14 1.58 6.22 -5.07 -0.03 1.55 16 29 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 30 H 0.14 0.35 8.06 -52.48 -0.42 -0.07 16 31 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.40 6.97 7.64 -40.82 -0.31 6.65 16 35 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -31.05 341.07 -6.24 -37.30 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -3.10 Total: 2.83 kcal Atomic # 6 Polarization: 21.98 SS G_CDS: -4.55 Total: 17.43 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.65 Total: -52.01 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.58 kcal Atomic # 9 Polarization: -12.42 SS G_CDS: 0.11 Total: -12.31 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.58 Total: 15.20 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.05 -6.24 -37.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932895633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.315 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds