Wall clock time and date at job start Tue Mar 31 2020 23:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39591 * 120.10191 * 255.96600 * 3 2 1 5 5 C 1.37923 * 119.78022 * 179.97438 * 4 3 2 6 6 C 1.38299 * 120.13827 * 0.25366 * 5 4 3 7 7 C 1.38575 * 120.42106 * 359.49158 * 6 5 4 8 8 C 1.37812 * 120.01961 * 0.50661 * 7 6 5 9 9 C 1.50757 * 108.93081 * 179.77899 * 8 7 6 10 10 N 1.46646 * 107.67949 * 0.02562 * 9 8 7 11 11 C 1.34784 * 126.58591 * 179.97438 * 10 9 8 12 12 O 1.21589 * 119.99801 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99763 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00021 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.47012 * 325.00490 * 14 13 11 16 16 C 1.50699 * 109.47112 * 205.00261 * 14 13 11 17 17 H 1.07993 * 120.00154 * 265.30525 * 16 14 13 18 18 C 1.37883 * 120.00106 * 85.31262 * 16 14 13 19 19 N 1.31509 * 119.99901 * 185.03468 * 18 16 14 20 20 Si 1.86800 * 119.99716 * 5.03779 * 18 16 14 21 21 H 1.48500 * 109.47328 * 84.64887 * 20 18 16 22 22 H 1.48500 * 109.46916 * 204.64933 * 20 18 16 23 23 H 1.48507 * 109.47187 * 324.64390 * 20 18 16 24 24 C 1.52995 * 109.47063 * 84.99980 * 14 13 11 25 25 F 1.39909 * 109.46679 * 64.14538 * 24 14 13 26 26 F 1.39900 * 109.47154 * 184.14003 * 24 14 13 27 27 F 1.39894 * 109.47446 * 304.14452 * 24 14 13 28 28 C 1.46632 * 106.82601 * 359.97438 * 10 9 8 29 29 H 1.07998 * 120.10548 * 0.02562 * 4 3 2 30 30 H 1.08003 * 119.92816 * 179.97438 * 5 4 3 31 31 H 1.07996 * 119.78627 * 179.74767 * 6 5 4 32 32 H 1.08996 * 109.81543 * 119.54433 * 9 8 7 33 33 H 1.09000 * 109.81771 * 240.46109 * 9 8 7 34 34 H 0.97005 * 119.99971 * 0.02562 * 13 11 10 35 35 H 0.97007 * 119.99810 * 179.97438 * 19 18 16 36 36 H 1.08997 * 109.81074 * 119.54417 * 28 10 9 37 37 H 1.08993 * 109.81520 * 240.38545 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 0.2938 1.1716 5 6 4.6472 0.2920 1.1642 6 6 5.3350 0.0060 -0.0010 7 6 4.6473 -0.2912 -1.1668 8 6 3.2692 -0.2928 -1.1730 9 6 2.7867 -0.6402 -2.5584 10 7 3.9679 -0.8521 -3.4012 11 6 3.9735 -1.1806 -4.7084 12 8 2.9231 -1.3293 -5.3024 13 7 5.1436 -1.3432 -5.3572 14 6 5.1498 -1.7008 -6.7779 15 1 4.3098 -2.3624 -6.9897 16 6 6.4399 -2.4037 -7.1133 17 1 7.2728 -1.8429 -7.5109 18 6 6.5568 -3.7628 -6.9128 19 7 7.7117 -4.3598 -7.1112 20 14 5.0748 -4.7562 -6.3595 21 1 4.2639 -5.1370 -7.5438 22 1 5.5343 -5.9824 -5.6591 23 1 4.2480 -3.9388 -5.4355 24 6 5.0254 -0.4319 -7.6237 25 9 6.1509 0.3745 -7.4227 26 9 4.9364 -0.7797 -8.9759 27 9 3.8755 0.2695 -7.2459 28 6 5.1416 -0.6380 -2.5487 29 1 2.7313 0.5204 2.0810 30 1 5.1912 0.5189 2.0692 31 1 6.4149 0.0102 -0.0013 32 1 2.1895 -1.5513 -2.5240 33 1 2.1894 0.1793 -2.9580 34 1 5.9816 -1.2242 -4.8834 35 1 7.7941 -5.3160 -6.9698 36 1 5.7403 -1.5480 -2.5091 37 1 5.7411 0.1816 -2.9445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932895633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:05 Heat of formation + Delta-G solvation = -132.934087 kcal Electronic energy + Delta-G solvation = -29272.500127 eV Core-core repulsion = 24599.444972 eV Total energy + Delta-G solvation = -4673.055155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.87723 -48.38977 -48.35986 -41.95782 -40.46810 -37.96953 -37.15935 -36.54571 -34.52260 -32.90939 -32.47623 -30.60503 -28.93729 -26.92160 -26.52831 -24.17555 -23.17206 -22.43296 -21.42291 -20.25153 -19.43447 -19.33823 -18.90675 -18.58144 -18.35171 -17.44307 -17.21444 -16.67961 -16.53106 -15.95108 -15.60255 -15.46081 -15.32005 -15.23556 -14.90461 -14.80521 -14.78197 -14.56494 -14.49827 -14.48349 -14.31745 -14.06693 -14.05888 -13.84129 -13.72976 -13.55598 -13.08692 -12.98291 -12.56795 -12.32532 -12.21704 -12.04356 -11.83898 -11.53226 -10.99714 -10.43554 -10.07538 -9.88171 -9.35876 -8.55728 -6.73912 -0.27661 0.21853 1.19152 1.33228 1.37100 1.45631 1.54363 1.85619 1.88542 2.16322 2.21509 2.63947 2.76397 2.77369 3.02763 3.15462 3.30354 3.33472 3.35977 3.64770 4.02620 4.19314 4.28482 4.32377 4.41130 4.47469 4.52190 4.52914 4.72672 4.83751 4.90263 5.02651 5.26499 5.37233 5.42477 5.45424 5.80343 5.83300 6.02098 6.36131 6.44756 6.93712 6.99769 7.46253 8.56018 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.003614 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.133974 B = 7745.050211 C = 8196.019649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.272 3.728 3 C -0.020 4.020 4 C -0.054 4.054 5 C -0.100 4.100 6 C -0.050 4.050 7 C -0.103 4.103 8 C -0.070 4.070 9 C 0.162 3.838 10 N -0.638 5.638 11 C 0.719 3.281 12 O -0.624 6.624 13 N -0.718 5.718 14 C 0.230 3.770 15 H 0.073 0.927 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.891 5.891 20 Si 0.918 3.082 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.261 1.261 24 C 0.442 3.558 25 F -0.184 7.184 26 F -0.187 7.187 27 F -0.193 7.193 28 C 0.134 3.866 29 H 0.164 0.836 30 H 0.181 0.819 31 H 0.167 0.833 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.409 0.591 35 H 0.281 0.719 36 H 0.096 0.904 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.175 8.552 19.418 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.042 4.042 3 C -0.024 4.024 4 C -0.074 4.074 5 C -0.117 4.117 6 C -0.069 4.069 7 C -0.104 4.104 8 C -0.073 4.073 9 C 0.039 3.961 10 N -0.376 5.376 11 C 0.421 3.579 12 O -0.504 6.504 13 N -0.374 5.374 14 C 0.124 3.876 15 H 0.091 0.909 16 C -0.574 4.574 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.526 5.526 20 Si 0.742 3.258 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.185 1.185 24 C 0.386 3.614 25 F -0.165 7.165 26 F -0.168 7.168 27 F -0.175 7.175 28 C 0.012 3.988 29 H 0.182 0.818 30 H 0.198 0.802 31 H 0.185 0.815 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.247 0.753 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.225 8.261 18.837 20.689 hybrid contribution -0.171 -0.447 -0.462 0.665 sum -2.396 7.814 18.375 20.111 Atomic orbital electron populations 1.81277 1.13492 1.10419 1.08680 1.26069 0.93057 0.92533 0.92585 1.15456 0.82903 1.09360 0.94668 1.21496 0.95274 0.94946 0.95655 1.21501 0.92872 0.98076 0.99290 1.21184 1.02350 0.93876 0.89487 1.20202 0.92716 1.01976 0.95503 1.20020 0.95428 0.99363 0.92518 1.19979 0.88119 1.01087 0.86954 1.46928 1.09033 1.74248 1.07440 1.15688 0.84744 0.77652 0.79780 1.90873 1.32371 1.60269 1.66897 1.46346 1.06851 1.73472 1.10731 1.19607 1.00850 0.88192 0.78910 0.90931 1.20696 0.97193 0.93698 1.45775 0.90975 1.25400 0.97482 0.97985 0.92625 1.69913 1.25107 1.12116 1.45435 0.86179 0.80512 0.79254 0.79902 1.19544 1.19534 1.18481 1.21478 0.72717 0.87528 0.79691 1.93086 1.52589 1.75975 1.94888 1.93097 1.95971 1.92249 1.35495 1.93148 1.51517 1.81681 1.91130 1.20575 0.87987 1.03321 0.86897 0.81830 0.80190 0.81540 0.91501 0.91110 0.75279 0.90896 0.88575 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.77 18.54 19.00 0.35 -12.42 16 2 C 0.27 6.00 15.10 88.33 1.33 7.34 16 3 C -0.02 -0.33 5.73 -21.34 -0.12 -0.45 16 4 C -0.05 -0.45 9.76 22.52 0.22 -0.23 16 5 C -0.10 -0.46 10.03 22.21 0.22 -0.24 16 6 C -0.05 -0.39 10.04 22.36 0.22 -0.17 16 7 C -0.10 -1.63 6.21 -19.85 -0.12 -1.75 16 8 C -0.07 -1.39 6.09 -19.58 -0.12 -1.51 16 9 C 0.16 4.52 6.62 85.62 0.57 5.09 16 10 N -0.64 -19.70 3.34 -847.55 -2.83 -22.53 16 11 C 0.72 28.84 7.81 179.05 1.40 30.23 16 12 O -0.62 -29.99 15.32 -4.00 -0.06 -30.06 16 13 N -0.72 -28.43 4.90 -461.42 -2.26 -30.69 16 14 C 0.23 10.46 1.45 44.24 0.06 10.53 16 15 H 0.07 3.57 5.34 -2.39 -0.01 3.56 16 16 C -0.54 -26.74 8.68 25.60 0.22 -26.52 16 17 H 0.07 3.92 7.69 -2.91 -0.02 3.90 16 18 C 0.07 3.68 5.47 84.66 0.46 4.14 16 19 N -0.89 -47.55 13.96 21.45 0.30 -47.25 16 20 Si 0.92 40.99 26.92 68.60 1.85 42.84 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.26 -11.94 6.82 99.48 0.68 -11.26 16 24 C 0.44 19.50 2.83 71.98 0.20 19.70 16 25 F -0.18 -7.72 16.65 44.97 0.75 -6.97 16 26 F -0.19 -8.35 17.12 44.97 0.77 -7.58 16 27 F -0.19 -8.57 15.56 44.97 0.70 -7.87 16 28 C 0.13 2.75 6.22 85.64 0.53 3.28 16 29 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 30 H 0.18 -0.47 8.06 -2.91 -0.02 -0.49 16 31 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.41 14.08 7.64 -92.70 -0.71 13.38 16 35 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -69.69 341.07 5.08 -64.60 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.43 Total: 8.48 kcal Atomic # 6 Polarization: 44.36 SS G_CDS: 5.09 Total: 49.44 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.44 Total: -112.89 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.06 Total: -30.06 kcal Atomic # 9 Polarization: -24.63 SS G_CDS: 2.22 Total: -22.42 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.85 Total: 42.84 kcal Total: -69.69 5.08 -64.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932895633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.330 kcal (2) G-P(sol) polarization free energy of solvation -69.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds