Wall clock time and date at job start Tue Mar 31 2020 23:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39647 * 120.17573 * 132.93800 * 3 2 1 5 5 C 1.37836 * 119.80634 * 180.25355 * 4 3 2 6 6 C 1.38628 * 120.30560 * 359.49251 * 5 4 3 7 7 C 1.38226 * 120.17105 * 0.25406 * 6 5 4 8 8 C 1.38176 * 120.09253 * 0.02562 * 7 6 5 9 9 C 1.50805 * 108.85249 * 180.02562 * 7 6 5 10 10 N 1.46627 * 107.70614 * 0.02562 * 9 7 6 11 11 C 1.34770 * 126.54109 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00840 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99434 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99694 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47710 * 325.00366 * 14 13 11 16 16 C 1.50703 * 109.47371 * 205.00162 * 14 13 11 17 17 H 1.08001 * 119.99790 * 0.02562 * 16 14 13 18 18 C 1.37870 * 120.00236 * 180.02562 * 16 14 13 19 19 N 1.31515 * 120.00278 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00112 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47284 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47440 * 119.99547 * 20 18 16 23 23 H 1.48498 * 109.47481 * 239.99574 * 20 18 16 24 24 C 1.53008 * 109.46796 * 85.00497 * 14 13 11 25 25 F 1.39900 * 109.47257 * 59.99869 * 24 14 13 26 26 F 1.39900 * 109.46835 * 179.97438 * 24 14 13 27 27 F 1.39896 * 109.46820 * 299.99885 * 24 14 13 28 28 C 1.46610 * 106.90811 * 0.02562 * 10 9 7 29 29 H 1.07998 * 120.10069 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.85105 * 179.77554 * 5 4 3 31 31 H 1.08004 * 120.01193 * 180.02562 * 8 7 6 32 32 H 1.08996 * 109.81086 * 119.55190 * 9 7 6 33 33 H 1.09000 * 109.81053 * 240.45608 * 9 7 6 34 34 H 0.97001 * 120.00505 * 0.02562 * 13 11 10 35 35 H 0.96996 * 120.00427 * 180.02562 * 19 18 16 36 36 H 1.08997 * 109.80866 * 240.44250 * 28 10 9 37 37 H 1.08998 * 109.80895 * 119.55181 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 0.8233 -0.8838 5 6 4.6479 0.8140 -0.8809 6 6 5.3401 -0.0001 0.0022 7 6 4.6516 -0.8129 0.8831 8 6 3.2699 -0.8171 0.8863 9 6 5.6464 -1.5806 1.7169 10 7 6.9904 -1.1821 1.2869 11 6 8.1588 -1.6370 1.7810 12 8 8.1613 -2.4620 2.6741 13 7 9.3247 -1.1772 1.2852 14 6 10.5948 -1.6712 1.8227 15 1 10.4897 -1.8562 2.8917 16 6 11.6713 -0.6415 1.5946 17 1 11.4331 0.2881 1.0992 18 6 12.9603 -0.8862 2.0183 19 7 13.2504 -2.0180 2.6221 20 14 14.2944 0.3905 1.7363 21 1 13.7140 1.5679 1.0420 22 1 14.8584 0.8142 3.0430 23 1 15.3716 -0.1959 0.8990 24 6 10.9762 -2.9730 1.1149 25 9 11.1113 -2.7356 -0.2572 26 9 12.1894 -3.4445 1.6278 27 9 9.9769 -3.9289 1.3267 28 6 6.8204 -0.1944 0.2168 29 1 2.7338 1.4623 -1.5701 30 1 5.1912 1.4473 -1.5666 31 1 2.7332 -1.4524 1.5755 32 1 5.5094 -1.3391 2.7709 33 1 5.5107 -2.6509 1.5615 34 1 9.3228 -0.5187 0.5730 35 1 14.1571 -2.1900 2.9205 36 1 7.2807 -0.5609 -0.7007 37 1 7.2791 0.7500 0.5095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932896542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:12 Heat of formation + Delta-G solvation = -91.085494 kcal Electronic energy + Delta-G solvation = -28899.365394 eV Core-core repulsion = 24228.124930 eV Total energy + Delta-G solvation = -4671.240464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.094 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -48.35944 -46.01283 -45.62628 -40.96831 -39.18636 -37.27510 -35.88972 -34.70418 -32.71877 -32.08563 -31.41358 -28.57411 -28.01435 -25.66970 -24.56728 -22.81285 -22.22860 -21.47199 -19.84473 -18.71800 -18.35989 -16.97705 -16.84089 -16.70150 -16.37629 -16.16075 -15.83175 -15.39469 -14.96587 -14.65597 -14.62210 -14.37529 -13.86483 -13.69013 -13.33965 -13.18512 -13.10062 -13.04942 -12.93845 -12.75201 -12.55165 -12.41065 -12.31067 -12.22469 -12.01418 -11.89315 -11.81638 -11.34107 -11.20924 -10.90205 -10.84741 -10.44333 -9.75871 -9.68417 -9.39748 -9.33115 -8.77615 -8.51709 -8.18149 -6.27533 -4.51749 0.30373 0.84518 2.28091 2.51121 2.71363 3.15189 3.22899 3.26015 3.41124 3.41908 3.59305 3.91786 4.12960 4.15293 4.42573 4.45315 4.59262 4.77590 4.89919 4.95835 5.04590 5.27799 5.37104 5.42532 5.51125 5.58625 5.69504 5.78499 5.80304 5.85403 5.96091 6.15646 6.26277 6.31139 6.79608 7.10489 7.10909 7.29718 7.53883 7.59660 8.41217 8.49436 9.01365 9.17372 10.64095 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.002698 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.621778 B =10375.647382 C =11002.668936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.258 3.742 3 C -0.029 4.029 4 C -0.067 4.067 5 C -0.096 4.096 6 C -0.067 4.067 7 C -0.100 4.100 8 C -0.046 4.046 9 C 0.171 3.829 10 N -0.640 5.640 11 C 0.727 3.273 12 O -0.572 6.572 13 N -0.721 5.721 14 C 0.262 3.738 15 H 0.087 0.913 16 C -0.552 4.552 17 H 0.078 0.922 18 C 0.065 3.935 19 N -0.838 5.838 20 Si 0.916 3.084 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.416 3.584 25 F -0.210 7.210 26 F -0.137 7.137 27 F -0.217 7.217 28 C 0.138 3.862 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.395 0.605 35 H 0.268 0.732 36 H 0.087 0.913 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.520 6.030 -6.641 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.057 4.057 3 C -0.032 4.032 4 C -0.087 4.087 5 C -0.114 4.114 6 C -0.069 4.069 7 C -0.101 4.101 8 C -0.067 4.067 9 C 0.047 3.953 10 N -0.380 5.380 11 C 0.429 3.571 12 O -0.448 6.448 13 N -0.373 5.373 14 C 0.156 3.844 15 H 0.104 0.896 16 C -0.589 4.589 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.472 5.472 20 Si 0.742 3.258 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.359 3.641 25 F -0.192 7.192 26 F -0.118 7.118 27 F -0.198 7.198 28 C 0.014 3.986 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.229 0.771 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.958 5.201 -5.812 16.869 hybrid contribution 1.178 0.632 -0.740 1.528 sum -13.780 5.834 -6.552 16.335 Atomic orbital electron populations 1.81274 1.12033 1.08077 1.07952 1.25607 0.92520 0.93775 0.93787 1.15764 0.84286 1.02090 1.01074 1.21065 0.93751 0.96938 0.96954 1.20428 0.93150 0.99043 0.98765 1.20627 0.95552 0.95487 0.95206 1.20285 0.93322 0.98427 0.98061 1.20398 0.92070 0.97116 0.97098 1.19942 0.78969 0.98636 0.97754 1.46946 1.04716 1.46183 1.40175 1.15323 0.78926 0.81055 0.81841 1.90953 1.85349 1.35925 1.32551 1.45271 1.04256 1.46366 1.41432 1.19668 0.80337 0.88767 0.95628 0.89583 1.20889 0.92447 1.02825 1.42712 0.90400 1.25078 0.98907 0.95882 0.94538 1.70409 1.20959 1.21224 1.34561 0.86149 0.80784 0.80680 0.78145 1.19404 1.20554 1.20569 1.23168 0.75622 0.88383 0.76913 1.92984 1.95997 1.94832 1.35375 1.93406 1.43063 1.89741 1.85561 1.93074 1.63124 1.68947 1.94703 1.20351 0.92028 0.93903 0.92274 0.84422 0.84320 0.84518 0.89735 0.89742 0.77107 0.92106 0.89544 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.77 18.54 41.84 0.78 -3.99 16 2 C 0.26 2.32 15.33 -22.47 -0.34 1.97 16 3 C -0.03 -0.21 5.73 -106.96 -0.61 -0.82 16 4 C -0.07 -0.39 9.76 -39.20 -0.38 -0.77 16 5 C -0.10 -0.58 10.03 -39.58 -0.40 -0.98 16 6 C -0.07 -0.56 6.22 -104.42 -0.65 -1.21 16 7 C -0.10 -0.89 6.21 -104.60 -0.65 -1.54 16 8 C -0.05 -0.34 9.76 -39.12 -0.38 -0.72 16 9 C 0.17 1.96 6.90 -5.07 -0.04 1.93 16 10 N -0.64 -9.02 3.34 -181.86 -0.61 -9.63 16 11 C 0.73 13.93 8.05 -86.92 -0.70 13.23 16 12 O -0.57 -13.26 15.29 5.29 0.08 -13.18 16 13 N -0.72 -14.08 4.95 -59.81 -0.30 -14.38 16 14 C 0.26 6.28 2.21 -69.08 -0.15 6.13 16 15 H 0.09 2.32 7.58 -51.93 -0.39 1.93 16 16 C -0.55 -13.50 8.46 -34.44 -0.29 -13.79 16 17 H 0.08 1.79 7.74 -52.49 -0.41 1.38 16 18 C 0.06 1.63 5.20 -17.82 -0.09 1.54 16 19 N -0.84 -22.39 9.50 55.43 0.53 -21.86 16 20 Si 0.92 19.43 29.54 -169.99 -5.02 14.41 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 C 0.42 10.39 2.81 37.16 0.10 10.49 16 25 F -0.21 -5.02 16.94 2.25 0.04 -4.98 16 26 F -0.14 -3.70 12.91 2.25 0.03 -3.67 16 27 F -0.22 -5.42 15.67 2.25 0.04 -5.38 16 28 C 0.14 1.38 6.21 -5.07 -0.03 1.34 16 29 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 30 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 31 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 6.54 7.59 -40.82 -0.31 6.23 16 35 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -31.41 338.82 -7.15 -38.57 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -3.20 Total: 2.18 kcal Atomic # 6 Polarization: 21.43 SS G_CDS: -4.62 Total: 16.81 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.40 Total: -49.85 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 9 Polarization: -14.14 SS G_CDS: 0.10 Total: -14.04 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.41 -7.15 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.520 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds