Wall clock time and date at job start Tue Mar 31 2020 23:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39647 * 120.17573 * 132.93800 * 3 2 1 5 5 C 1.37836 * 119.80634 * 180.25355 * 4 3 2 6 6 C 1.38628 * 120.30560 * 359.49251 * 5 4 3 7 7 C 1.38226 * 120.17105 * 0.25406 * 6 5 4 8 8 C 1.38176 * 120.09253 * 0.02562 * 7 6 5 9 9 C 1.50805 * 108.85249 * 180.02562 * 7 6 5 10 10 N 1.46627 * 107.70614 * 0.02562 * 9 7 6 11 11 C 1.34770 * 126.54109 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00840 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99434 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99694 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47710 * 325.00366 * 14 13 11 16 16 C 1.50703 * 109.47371 * 205.00162 * 14 13 11 17 17 H 1.08001 * 119.99790 * 0.02562 * 16 14 13 18 18 C 1.37870 * 120.00236 * 180.02562 * 16 14 13 19 19 N 1.31515 * 120.00278 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00112 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47284 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47440 * 119.99547 * 20 18 16 23 23 H 1.48498 * 109.47481 * 239.99574 * 20 18 16 24 24 C 1.53008 * 109.46796 * 85.00497 * 14 13 11 25 25 F 1.39900 * 109.47257 * 59.99869 * 24 14 13 26 26 F 1.39900 * 109.46835 * 179.97438 * 24 14 13 27 27 F 1.39896 * 109.46820 * 299.99885 * 24 14 13 28 28 C 1.46610 * 106.90811 * 0.02562 * 10 9 7 29 29 H 1.07998 * 120.10069 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.85105 * 179.77554 * 5 4 3 31 31 H 1.08004 * 120.01193 * 180.02562 * 8 7 6 32 32 H 1.08996 * 109.81086 * 119.55190 * 9 7 6 33 33 H 1.09000 * 109.81053 * 240.45608 * 9 7 6 34 34 H 0.97001 * 120.00505 * 0.02562 * 13 11 10 35 35 H 0.96996 * 120.00427 * 180.02562 * 19 18 16 36 36 H 1.08997 * 109.80866 * 240.44250 * 28 10 9 37 37 H 1.08998 * 109.80895 * 119.55181 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 0.8233 -0.8838 5 6 4.6479 0.8140 -0.8809 6 6 5.3401 -0.0001 0.0022 7 6 4.6516 -0.8129 0.8831 8 6 3.2699 -0.8171 0.8863 9 6 5.6464 -1.5806 1.7169 10 7 6.9904 -1.1821 1.2869 11 6 8.1588 -1.6370 1.7810 12 8 8.1613 -2.4620 2.6741 13 7 9.3247 -1.1772 1.2852 14 6 10.5948 -1.6712 1.8227 15 1 10.4897 -1.8562 2.8917 16 6 11.6713 -0.6415 1.5946 17 1 11.4331 0.2881 1.0992 18 6 12.9603 -0.8862 2.0183 19 7 13.2504 -2.0180 2.6221 20 14 14.2944 0.3905 1.7363 21 1 13.7140 1.5679 1.0420 22 1 14.8584 0.8142 3.0430 23 1 15.3716 -0.1959 0.8990 24 6 10.9762 -2.9730 1.1149 25 9 11.1113 -2.7356 -0.2572 26 9 12.1894 -3.4445 1.6278 27 9 9.9769 -3.9289 1.3267 28 6 6.8204 -0.1944 0.2168 29 1 2.7338 1.4623 -1.5701 30 1 5.1912 1.4473 -1.5666 31 1 2.7332 -1.4524 1.5755 32 1 5.5094 -1.3391 2.7709 33 1 5.5107 -2.6509 1.5615 34 1 9.3228 -0.5187 0.5730 35 1 14.1571 -2.1900 2.9205 36 1 7.2807 -0.5609 -0.7007 37 1 7.2791 0.7500 0.5095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932896542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:10 Heat of formation + Delta-G solvation = -109.757453 kcal Electronic energy + Delta-G solvation = -28900.175071 eV Core-core repulsion = 24228.124930 eV Total energy + Delta-G solvation = -4672.050141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.094 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -50.37534 -48.00955 -47.68762 -41.85810 -40.39711 -38.17817 -36.84276 -36.41276 -34.47618 -32.72918 -32.42765 -30.11601 -28.90909 -26.79000 -26.43002 -23.56513 -23.42322 -22.69179 -21.33826 -19.80611 -19.40873 -18.84046 -18.71595 -18.58137 -17.68310 -17.33381 -17.07505 -16.69252 -16.21743 -15.96719 -15.31331 -15.29027 -15.04959 -14.94677 -14.78867 -14.64923 -14.47877 -14.41191 -14.25958 -14.00886 -13.97059 -13.95221 -13.87923 -13.77355 -13.57631 -13.06292 -12.94022 -12.70367 -12.62418 -12.59073 -12.16951 -11.92016 -11.52311 -11.38652 -10.67136 -10.34260 -10.00051 -9.89187 -9.28477 -8.18126 -6.48796 -0.29886 0.30029 1.39752 1.49971 1.52131 1.60909 1.64748 1.85891 2.06073 2.39074 2.57605 2.74631 2.80943 2.94450 2.98422 3.37280 3.40735 3.81860 3.90401 3.92504 4.16769 4.20689 4.40105 4.48112 4.50158 4.57477 4.59855 4.74193 4.88187 4.98016 5.09419 5.15008 5.28865 5.42050 5.48599 5.58101 5.68029 5.75321 6.05069 6.42644 6.56688 6.99422 7.21478 7.55735 8.74849 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.002698 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.621778 B =10375.647382 C =11002.668936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.283 3.717 3 C -0.034 4.034 4 C -0.051 4.051 5 C -0.085 4.085 6 C -0.068 4.068 7 C -0.111 4.111 8 C -0.041 4.041 9 C 0.166 3.834 10 N -0.636 5.636 11 C 0.723 3.277 12 O -0.621 6.621 13 N -0.714 5.714 14 C 0.271 3.729 15 H 0.047 0.953 16 C -0.557 4.557 17 H 0.095 0.905 18 C 0.014 3.986 19 N -0.875 5.875 20 Si 0.984 3.016 21 H -0.252 1.252 22 H -0.280 1.280 23 H -0.283 1.283 24 C 0.412 3.588 25 F -0.202 7.202 26 F -0.151 7.151 27 F -0.220 7.220 28 C 0.131 3.869 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.411 0.589 35 H 0.268 0.732 36 H 0.098 0.902 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.128 8.616 -8.768 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.031 4.031 3 C -0.037 4.037 4 C -0.071 4.071 5 C -0.103 4.103 6 C -0.069 4.069 7 C -0.112 4.112 8 C -0.062 4.062 9 C 0.043 3.957 10 N -0.375 5.375 11 C 0.425 3.575 12 O -0.501 6.501 13 N -0.368 5.368 14 C 0.163 3.837 15 H 0.065 0.935 16 C -0.594 4.594 17 H 0.113 0.887 18 C -0.191 4.191 19 N -0.509 5.509 20 Si 0.807 3.193 21 H -0.175 1.175 22 H -0.206 1.206 23 H -0.209 1.209 24 C 0.356 3.644 25 F -0.184 7.184 26 F -0.132 7.132 27 F -0.202 7.202 28 C 0.009 3.991 29 H 0.183 0.817 30 H 0.188 0.812 31 H 0.164 0.836 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.248 0.752 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.633 7.835 -7.991 19.226 hybrid contribution 1.289 -0.189 -0.103 1.306 sum -14.345 7.646 -8.094 18.159 Atomic orbital electron populations 1.81307 1.13408 1.09729 1.09579 1.25750 0.92576 0.92389 0.92403 1.15795 0.83305 1.02841 1.01797 1.21397 0.93733 0.95899 0.96106 1.20703 0.93138 0.98297 0.98146 1.20590 0.94314 0.96152 0.95876 1.19964 0.93391 0.99236 0.98616 1.20438 0.91463 0.97073 0.97182 1.20011 0.78529 0.98829 0.98305 1.46800 1.04003 1.46187 1.40490 1.15398 0.79888 0.80724 0.81478 1.90912 1.86323 1.38117 1.34727 1.44948 1.03214 1.46742 1.41870 1.19228 0.82277 0.88545 0.93637 0.93488 1.21238 0.92505 1.03286 1.42370 0.88658 1.25999 1.01310 0.97658 0.94134 1.70542 1.21365 1.23254 1.35771 0.85104 0.77657 0.78595 0.77920 1.17526 1.20566 1.20887 1.23362 0.75089 0.88705 0.77278 1.92982 1.95951 1.94778 1.34720 1.93378 1.44008 1.89976 1.85852 1.93064 1.63153 1.69179 1.94768 1.20610 0.93828 0.93397 0.91287 0.81709 0.81242 0.83573 0.90241 0.90602 0.75231 0.92206 0.88378 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.07 18.54 19.01 0.35 -9.71 16 2 C 0.28 4.53 15.33 88.33 1.35 5.88 16 3 C -0.03 -0.39 5.73 -21.38 -0.12 -0.52 16 4 C -0.05 -0.38 9.76 22.52 0.22 -0.16 16 5 C -0.08 -0.65 10.03 22.27 0.22 -0.42 16 6 C -0.07 -0.93 6.22 -19.73 -0.12 -1.05 16 7 C -0.11 -1.79 6.21 -19.85 -0.12 -1.91 16 8 C -0.04 -0.52 9.76 22.57 0.22 -0.30 16 9 C 0.17 3.82 6.90 85.64 0.59 4.41 16 10 N -0.64 -17.61 3.34 -847.54 -2.83 -20.44 16 11 C 0.72 28.09 8.05 179.06 1.44 29.53 16 12 O -0.62 -29.97 15.29 -3.97 -0.06 -30.03 16 13 N -0.71 -27.78 4.95 -461.40 -2.28 -30.06 16 14 C 0.27 13.21 2.21 44.25 0.10 13.31 16 15 H 0.05 2.67 7.58 -2.39 -0.02 2.65 16 16 C -0.56 -26.96 8.46 25.60 0.22 -26.74 16 17 H 0.10 4.17 7.74 -2.91 -0.02 4.15 16 18 C 0.01 0.71 5.20 84.65 0.44 1.15 16 19 N -0.88 -47.53 9.50 21.44 0.20 -47.33 16 20 Si 0.98 39.07 29.54 68.60 2.03 41.10 16 21 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 22 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 24 C 0.41 20.96 2.81 71.98 0.20 21.16 16 25 F -0.20 -9.61 16.94 44.97 0.76 -8.84 16 26 F -0.15 -8.39 12.91 44.97 0.58 -7.81 16 27 F -0.22 -11.28 15.67 44.97 0.70 -10.58 16 28 C 0.13 2.30 6.21 85.65 0.53 2.83 16 29 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 30 H 0.17 0.32 8.06 -2.91 -0.02 0.29 16 31 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.41 13.01 7.59 -92.71 -0.70 12.31 16 35 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -70.07 338.82 5.09 -64.98 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.46 Total: 11.56 kcal Atomic # 6 Polarization: 41.99 SS G_CDS: 5.17 Total: 47.16 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -4.56 Total: -107.55 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.06 Total: -30.03 kcal Atomic # 9 Polarization: -29.28 SS G_CDS: 2.05 Total: -27.23 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -70.07 5.09 -64.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.775 kcal (2) G-P(sol) polarization free energy of solvation -70.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds